[INFO] fetching crate rurdkit 0.1.1... [INFO] documenting rurdkit-0.1.1 against nightly for scrape-examples [INFO] extracting crate rurdkit 0.1.1 into /workspace/builds/worker-4/source [INFO] validating manifest of crates.io crate rurdkit 0.1.1 on toolchain nightly [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+nightly" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate rurdkit 0.1.1 [INFO] finished tweaking crates.io crate rurdkit 0.1.1 [INFO] tweaked toml for crates.io crate rurdkit 0.1.1 written to /workspace/builds/worker-4/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+nightly" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+nightly" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:bb5b0feb4f87116a4ea905b7ff5bf5b85913db05e9f0fbc1abdd3168928d9075" "/opt/rustwide/cargo-home/bin/cargo" "+nightly" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] a70380796c4fd282ecfc9a74675caad031f027bf335bf7a10d47e41eb1252131 [INFO] running `Command { std: "docker" "start" "-a" "a70380796c4fd282ecfc9a74675caad031f027bf335bf7a10d47e41eb1252131", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "a70380796c4fd282ecfc9a74675caad031f027bf335bf7a10d47e41eb1252131", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a70380796c4fd282ecfc9a74675caad031f027bf335bf7a10d47e41eb1252131", kill_on_drop: false }` [INFO] [stdout] a70380796c4fd282ecfc9a74675caad031f027bf335bf7a10d47e41eb1252131 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:bb5b0feb4f87116a4ea905b7ff5bf5b85913db05e9f0fbc1abdd3168928d9075" "/opt/rustwide/cargo-home/bin/cargo" "+nightly" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 83da8d7d20a5a233c1f01b799aaad7c5bc36ac597c8f8f84f6c9ff87e484c60e [INFO] running `Command { std: "docker" "start" "-a" "83da8d7d20a5a233c1f01b799aaad7c5bc36ac597c8f8f84f6c9ff87e484c60e", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.47 [INFO] [stderr] Compiling cc v1.0.77 [INFO] [stderr] Compiling unicode-ident v1.0.5 [INFO] [stderr] Compiling quote v1.0.21 [INFO] [stderr] Compiling syn v1.0.105 [INFO] [stderr] Compiling scratch v1.0.2 [INFO] [stderr] Compiling cxxbridge-flags v1.0.83 [INFO] [stderr] Compiling termcolor v1.1.3 [INFO] [stderr] Compiling unicode-width v0.1.10 [INFO] [stderr] Compiling once_cell v1.16.0 [INFO] [stderr] Compiling codespan-reporting v0.11.1 [INFO] [stderr] Compiling link-cplusplus v1.0.7 [INFO] [stderr] Compiling cxx v1.0.83 [INFO] [stderr] Compiling cxx-build v1.0.83 [INFO] [stderr] Compiling cxxbridge-macro v1.0.83 [INFO] [stderr] Compiling rurdkit v0.1.1 (/opt/rustwide/workdir) [INFO] [stderr] The following warnings were emitted during compilation: [INFO] [stderr] [INFO] [stderr] warning: In file included from /opt/rustwide/target/debug/build/rurdkit-47ba978345768ddb/out/cxxbridge/sources/src/lib.rs.cc:1: [INFO] [stderr] warning: /opt/rustwide/workdir/src/rdmol.h:2:10: fatal error: GraphMol/GraphMol.h: No such file or directory [INFO] [stderr] warning: 2 | #include "GraphMol/GraphMol.h" [INFO] [stderr] warning: | ^~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: compilation terminated. [INFO] [stderr] [INFO] [stderr] error: failed to run custom build command for `rurdkit v0.1.1 (/opt/rustwide/workdir)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/rurdkit-01628d6b63f8373f/build-script-build` (exit status: 1) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:CXXBRIDGE_PREFIX= [INFO] [stderr] cargo:CXXBRIDGE_DIR0=/opt/rustwide/target/debug/build/rurdkit-47ba978345768ddb/out/cxxbridge/include [INFO] [stderr] cargo:CXXBRIDGE_DIR1=/opt/rustwide/workdir [INFO] [stderr] TARGET = Some("x86_64-unknown-linux-gnu") [INFO] [stderr] OPT_LEVEL = Some("0") [INFO] [stderr] HOST = Some("x86_64-unknown-linux-gnu") [INFO] [stderr] cargo:rerun-if-env-changed=CXX_x86_64-unknown-linux-gnu [INFO] [stderr] CXX_x86_64-unknown-linux-gnu = None [INFO] [stderr] cargo:rerun-if-env-changed=CXX_x86_64_unknown_linux_gnu [INFO] [stderr] CXX_x86_64_unknown_linux_gnu = None [INFO] [stderr] cargo:rerun-if-env-changed=HOST_CXX [INFO] [stderr] HOST_CXX = None [INFO] [stderr] cargo:rerun-if-env-changed=CXX [INFO] [stderr] CXX = None [INFO] [stderr] cargo:rerun-if-env-changed=CXXFLAGS_x86_64-unknown-linux-gnu [INFO] [stderr] CXXFLAGS_x86_64-unknown-linux-gnu = None [INFO] [stderr] cargo:rerun-if-env-changed=CXXFLAGS_x86_64_unknown_linux_gnu [INFO] [stderr] CXXFLAGS_x86_64_unknown_linux_gnu = None [INFO] [stderr] cargo:rerun-if-env-changed=HOST_CXXFLAGS [INFO] [stderr] HOST_CXXFLAGS = None [INFO] [stderr] cargo:rerun-if-env-changed=CXXFLAGS [INFO] [stderr] CXXFLAGS = None [INFO] [stderr] cargo:rerun-if-env-changed=CRATE_CC_NO_DEFAULTS [INFO] [stderr] CRATE_CC_NO_DEFAULTS = None [INFO] [stderr] DEBUG = Some("true") [INFO] [stderr] CARGO_CFG_TARGET_FEATURE = Some("fxsr,llvm14-builtins-abi,sse,sse2") [INFO] [stderr] cargo:rerun-if-env-changed=CXX_x86_64-unknown-linux-gnu [INFO] [stderr] CXX_x86_64-unknown-linux-gnu = None [INFO] [stderr] cargo:rerun-if-env-changed=CXX_x86_64_unknown_linux_gnu [INFO] [stderr] CXX_x86_64_unknown_linux_gnu = None [INFO] [stderr] cargo:rerun-if-env-changed=HOST_CXX [INFO] [stderr] HOST_CXX = None [INFO] [stderr] cargo:rerun-if-env-changed=CXX [INFO] [stderr] CXX = None [INFO] [stderr] cargo:rerun-if-env-changed=CXXFLAGS_x86_64-unknown-linux-gnu [INFO] [stderr] CXXFLAGS_x86_64-unknown-linux-gnu = None [INFO] [stderr] cargo:rerun-if-env-changed=CXXFLAGS_x86_64_unknown_linux_gnu [INFO] [stderr] CXXFLAGS_x86_64_unknown_linux_gnu = None [INFO] [stderr] cargo:rerun-if-env-changed=HOST_CXXFLAGS [INFO] [stderr] HOST_CXXFLAGS = None [INFO] [stderr] cargo:rerun-if-env-changed=CXXFLAGS [INFO] [stderr] CXXFLAGS = None [INFO] [stderr] cargo:rerun-if-env-changed=CRATE_CC_NO_DEFAULTS [INFO] [stderr] CRATE_CC_NO_DEFAULTS = None [INFO] [stderr] CARGO_CFG_TARGET_FEATURE = Some("fxsr,llvm14-builtins-abi,sse,sse2") [INFO] [stderr] running: "c++" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-gdwarf-4" "-fno-omit-frame-pointer" "-m64" "-I" "/opt/rustwide/target/debug/build/rurdkit-47ba978345768ddb/out/cxxbridge/include" "-I" "/opt/rustwide/workdir" "-I" "/usr/local/include/rdkit" "-I" "/usr/local/include" "-Wall" "-Wextra" "-std=c++14" "-o" "/opt/rustwide/target/debug/build/rurdkit-47ba978345768ddb/out/cxxbridge/sources/src/lib.rs.o" "-c" "/opt/rustwide/target/debug/build/rurdkit-47ba978345768ddb/out/cxxbridge/sources/src/lib.rs.cc" [INFO] [stderr] cargo:warning=In file included from /opt/rustwide/target/debug/build/rurdkit-47ba978345768ddb/out/cxxbridge/sources/src/lib.rs.cc:1: [INFO] [stderr] cargo:warning=/opt/rustwide/workdir/src/rdmol.h:2:10: fatal error: GraphMol/GraphMol.h: No such file or directory [INFO] [stderr] cargo:warning= 2 | #include "GraphMol/GraphMol.h" [INFO] [stderr] cargo:warning= | ^~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] cargo:warning=compilation terminated. [INFO] [stderr] exit status: 1 [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] [INFO] [stderr] CXX include path: [INFO] [stderr] /opt/rustwide/target/debug/build/rurdkit-47ba978345768ddb/out/cxxbridge/include [INFO] [stderr] /opt/rustwide/workdir [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] error occurred: Command "c++" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-gdwarf-4" "-fno-omit-frame-pointer" "-m64" "-I" "/opt/rustwide/target/debug/build/rurdkit-47ba978345768ddb/out/cxxbridge/include" "-I" "/opt/rustwide/workdir" "-I" "/usr/local/include/rdkit" "-I" "/usr/local/include" "-Wall" "-Wextra" "-std=c++14" "-o" "/opt/rustwide/target/debug/build/rurdkit-47ba978345768ddb/out/cxxbridge/sources/src/lib.rs.o" "-c" "/opt/rustwide/target/debug/build/rurdkit-47ba978345768ddb/out/cxxbridge/sources/src/lib.rs.cc" with args "c++" did not execute successfully (status code exit status: 1). [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] running `Command { std: "docker" "inspect" "83da8d7d20a5a233c1f01b799aaad7c5bc36ac597c8f8f84f6c9ff87e484c60e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "83da8d7d20a5a233c1f01b799aaad7c5bc36ac597c8f8f84f6c9ff87e484c60e", kill_on_drop: false }` [INFO] [stdout] 83da8d7d20a5a233c1f01b799aaad7c5bc36ac597c8f8f84f6c9ff87e484c60e