[INFO] fetching crate openmm-sys 7.4.1... [INFO] documenting openmm-sys-7.4.1 against nightly for scrape-examples [INFO] extracting crate openmm-sys 7.4.1 into /workspace/builds/worker-4/source [INFO] validating manifest of crates.io crate openmm-sys 7.4.1 on toolchain nightly [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+nightly" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate openmm-sys 7.4.1 [INFO] finished tweaking crates.io crate openmm-sys 7.4.1 [INFO] tweaked toml for crates.io crate openmm-sys 7.4.1 written to /workspace/builds/worker-4/source/Cargo.toml [INFO] crate crates.io crate openmm-sys 7.4.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+nightly" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:bb5b0feb4f87116a4ea905b7ff5bf5b85913db05e9f0fbc1abdd3168928d9075" "/opt/rustwide/cargo-home/bin/cargo" "+nightly" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 6bc865b9b48efb25f4bfba0d535676030f636fb9e8e16a41f8f6fa258f1c0e87 [INFO] running `Command { std: "docker" "start" "-a" "6bc865b9b48efb25f4bfba0d535676030f636fb9e8e16a41f8f6fa258f1c0e87", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "6bc865b9b48efb25f4bfba0d535676030f636fb9e8e16a41f8f6fa258f1c0e87", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "6bc865b9b48efb25f4bfba0d535676030f636fb9e8e16a41f8f6fa258f1c0e87", kill_on_drop: false }` [INFO] [stdout] 6bc865b9b48efb25f4bfba0d535676030f636fb9e8e16a41f8f6fa258f1c0e87 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:bb5b0feb4f87116a4ea905b7ff5bf5b85913db05e9f0fbc1abdd3168928d9075" "/opt/rustwide/cargo-home/bin/cargo" "+nightly" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] de4b205adbeeed523537b9130bf7bcfa53a549ee7185ad242507e33cbdff8baa [INFO] running `Command { std: "docker" "start" "-a" "de4b205adbeeed523537b9130bf7bcfa53a549ee7185ad242507e33cbdff8baa", kill_on_drop: false }` [INFO] [stderr] Compiling cc v1.0.59 [INFO] [stderr] Compiling cmake v0.1.44 [INFO] [stderr] Compiling openmm-sys v7.4.1 (/opt/rustwide/workdir) [INFO] [stderr] The following warnings were emitted during compilation: [INFO] [stderr] [INFO] [stderr] warning: [OpenMM-sys] Dynamically linking against the OpenMM library. [INFO] [stderr] [INFO] [stderr] error: failed to run custom build command for `openmm-sys v7.4.1 (/opt/rustwide/workdir)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/openmm-sys-69488f43d73918b3/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:warning=[OpenMM-sys] Dynamically linking against the OpenMM library. [INFO] [stderr] running: "cmake" "/opt/rustwide/workdir/openmm" "-DOPENMM_BUILD_PYTHON_WRAPPERS=OFF" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/openmm-sys-fe891622825c4d48/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Release" [INFO] [stderr] -- Found PythonInterp: /usr/bin/python (found version "2.7.18") [INFO] [stderr] -- The C compiler identification is GNU 9.4.0 [INFO] [stderr] -- The CXX compiler identification is GNU 9.4.0 [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc -- works [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ -- works [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Configuring incomplete, errors occurred! [INFO] [stderr] See also "/opt/rustwide/target/debug/build/openmm-sys-fe891622825c4d48/out/build/CMakeFiles/CMakeOutput.log". [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] fatal: not a git repository (or any parent up to mount point /opt/rustwide) [INFO] [stderr] Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). [INFO] [stderr] CMake Deprecation Warning at CMakeLists.txt:25 (CMAKE_POLICY): [INFO] [stderr] The OLD behavior for policy CMP0042 will be removed from a future version [INFO] [stderr] of CMake. [INFO] [stderr] [INFO] [stderr] The cmake-policies(7) manual explains that the OLD behaviors of all [INFO] [stderr] policies are deprecated and that a policy should be set to OLD only under [INFO] [stderr] specific short-term circumstances. Projects should be ported to the NEW [INFO] [stderr] behavior and not rely on setting a policy to OLD. [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Error at /usr/share/cmake-3.16/Modules/FindPackageHandleStandardArgs.cmake:146 (message): [INFO] [stderr] Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) [INFO] [stderr] Call Stack (most recent call first): [INFO] [stderr] /usr/share/cmake-3.16/Modules/FindPackageHandleStandardArgs.cmake:393 (_FPHSA_FAILURE_MESSAGE) [INFO] [stderr] /usr/share/cmake-3.16/Modules/FindDoxygen.cmake:633 (find_package_handle_standard_args) [INFO] [stderr] wrappers/CMakeLists.txt:1 (find_package) [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] thread 'main' panicked at ' [INFO] [stderr] command did not execute successfully, got: exit status: 1 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:885:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x5590a0b4267a - std::backtrace_rs::backtrace::libunwind::trace::h3bfe63c4aecfa0e2 [INFO] [stderr] at /rustc/bdb07a8ec8e77aa10fb84fae1d4ff71c21180bb4/library/std/src/../../backtrace/src/backtrace/libunwind.rs:93:5 [INFO] [stderr] 1: 0x5590a0b4267a - std::backtrace_rs::backtrace::trace_unsynchronized::h978c02637c6cb8f9 [INFO] [stderr] at /rustc/bdb07a8ec8e77aa10fb84fae1d4ff71c21180bb4/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x5590a0b4267a - std::sys_common::backtrace::_print_fmt::h86a708dcb1665377 [INFO] [stderr] at /rustc/bdb07a8ec8e77aa10fb84fae1d4ff71c21180bb4/library/std/src/sys_common/backtrace.rs:65:5 [INFO] [stderr] 3: 0x5590a0b4267a - ::fmt::hdbf89765373fb801 [INFO] [stderr] at /rustc/bdb07a8ec8e77aa10fb84fae1d4ff71c21180bb4/library/std/src/sys_common/backtrace.rs:44:22 [INFO] [stderr] 4: 0x5590a0b624de - core::fmt::write::hbf11a3bb4e6d2aba [INFO] [stderr] at /rustc/bdb07a8ec8e77aa10fb84fae1d4ff71c21180bb4/library/core/src/fmt/mod.rs:1208:17 [INFO] [stderr] 5: 0x5590a0b3f3c5 - std::io::Write::write_fmt::hd68261eacc348bbd [INFO] [stderr] at /rustc/bdb07a8ec8e77aa10fb84fae1d4ff71c21180bb4/library/std/src/io/mod.rs:1682:15 [INFO] [stderr] 6: 0x5590a0b42445 - std::sys_common::backtrace::_print::ha8e375b58cdeca4a [INFO] [stderr] at /rustc/bdb07a8ec8e77aa10fb84fae1d4ff71c21180bb4/library/std/src/sys_common/backtrace.rs:47:5 [INFO] [stderr] 7: 0x5590a0b42445 - std::sys_common::backtrace::print::he3086c07df1167ca [INFO] [stderr] at /rustc/bdb07a8ec8e77aa10fb84fae1d4ff71c21180bb4/library/std/src/sys_common/backtrace.rs:34:9 [INFO] [stderr] 8: 0x5590a0b43c6f - std::panicking::default_hook::{{closure}}::h0c12a9095c948e43 [INFO] [stderr] at /rustc/bdb07a8ec8e77aa10fb84fae1d4ff71c21180bb4/library/std/src/panicking.rs:267:22 [INFO] [stderr] 9: 0x5590a0b439ab - std::panicking::default_hook::h1ae5478ad617eb24 [INFO] [stderr] at /rustc/bdb07a8ec8e77aa10fb84fae1d4ff71c21180bb4/library/std/src/panicking.rs:286:9 [INFO] [stderr] 10: 0x5590a0b4437c - std::panicking::rust_panic_with_hook::h63a24f957ccb5d93 [INFO] [stderr] at /rustc/bdb07a8ec8e77aa10fb84fae1d4ff71c21180bb4/library/std/src/panicking.rs:688:13 [INFO] [stderr] 11: 0x5590a0b44119 - std::panicking::begin_panic_handler::{{closure}}::h1499194b322f3b28 [INFO] [stderr] at /rustc/bdb07a8ec8e77aa10fb84fae1d4ff71c21180bb4/library/std/src/panicking.rs:579:13 [INFO] [stderr] 12: 0x5590a0b42b2c - std::sys_common::backtrace::__rust_end_short_backtrace::h5569dab7b5c29ca8 [INFO] [stderr] at /rustc/bdb07a8ec8e77aa10fb84fae1d4ff71c21180bb4/library/std/src/sys_common/backtrace.rs:137:18 [INFO] [stderr] 13: 0x5590a0b43e22 - rust_begin_unwind [INFO] [stderr] at /rustc/bdb07a8ec8e77aa10fb84fae1d4ff71c21180bb4/library/std/src/panicking.rs:575:5 [INFO] [stderr] 14: 0x5590a0ad3663 - core::panicking::panic_fmt::h81b99a9e904184d4 [INFO] [stderr] at /rustc/bdb07a8ec8e77aa10fb84fae1d4ff71c21180bb4/library/core/src/panicking.rs:64:14 [INFO] [stderr] 15: 0x5590a0ae079f - cmake::fail::h06d1141b81cca450 [INFO] [stderr] 16: 0x5590a0ae0203 - cmake::run::hdbbd89a78aed80e6 [INFO] [stderr] 17: 0x5590a0adc905 - cmake::Config::build::h3da12674bca2e4c6 [INFO] [stderr] 18: 0x5590a0ad640d - build_script_build::main::h3a89971dc281c6a6 [INFO] [stderr] 19: 0x5590a0ad7dd3 - core::ops::function::FnOnce::call_once::h1e593e4ce1bf6026 [INFO] [stderr] 20: 0x5590a0ad8279 - std::sys_common::backtrace::__rust_begin_short_backtrace::h6ac89e578c1033cd [INFO] [stderr] 21: 0x5590a0ad7ab9 - std::rt::lang_start::{{closure}}::hbc0399cff6491765 [INFO] [stderr] 22: 0x5590a0b3b55c - core::ops::function::impls:: for &F>::call_once::h78c42ac725efa1cf [INFO] [stderr] at /rustc/bdb07a8ec8e77aa10fb84fae1d4ff71c21180bb4/library/core/src/ops/function.rs:606:13 [INFO] [stderr] 23: 0x5590a0b3b55c - std::panicking::try::do_call::he9c2e2d3c1d542c9 [INFO] [stderr] at /rustc/bdb07a8ec8e77aa10fb84fae1d4ff71c21180bb4/library/std/src/panicking.rs:483:40 [INFO] [stderr] 24: 0x5590a0b3b55c - std::panicking::try::h1c6aa5d0fbd926ce [INFO] [stderr] at /rustc/bdb07a8ec8e77aa10fb84fae1d4ff71c21180bb4/library/std/src/panicking.rs:447:19 [INFO] [stderr] 25: 0x5590a0b3b55c - std::panic::catch_unwind::h8c18c387443a8343 [INFO] [stderr] at /rustc/bdb07a8ec8e77aa10fb84fae1d4ff71c21180bb4/library/std/src/panic.rs:137:14 [INFO] [stderr] 26: 0x5590a0b3b55c - std::rt::lang_start_internal::{{closure}}::h121da69a0c637bbc [INFO] [stderr] at /rustc/bdb07a8ec8e77aa10fb84fae1d4ff71c21180bb4/library/std/src/rt.rs:148:48 [INFO] [stderr] 27: 0x5590a0b3b55c - std::panicking::try::do_call::h02c50a2227007615 [INFO] [stderr] at /rustc/bdb07a8ec8e77aa10fb84fae1d4ff71c21180bb4/library/std/src/panicking.rs:483:40 [INFO] [stderr] 28: 0x5590a0b3b55c - std::panicking::try::h2e22346eb385c3b2 [INFO] [stderr] at /rustc/bdb07a8ec8e77aa10fb84fae1d4ff71c21180bb4/library/std/src/panicking.rs:447:19 [INFO] [stderr] 29: 0x5590a0b3b55c - std::panic::catch_unwind::hba27888842669aa2 [INFO] [stderr] at /rustc/bdb07a8ec8e77aa10fb84fae1d4ff71c21180bb4/library/std/src/panic.rs:137:14 [INFO] [stderr] 30: 0x5590a0b3b55c - std::rt::lang_start_internal::hfeb0a6ef3b443c94 [INFO] [stderr] at /rustc/bdb07a8ec8e77aa10fb84fae1d4ff71c21180bb4/library/std/src/rt.rs:148:20 [INFO] [stderr] 31: 0x5590a0ad7a97 - std::rt::lang_start::hd274b16d4f6455ef [INFO] [stderr] 32: 0x5590a0ad6ec5 - main [INFO] [stderr] 33: 0x7fdfc2fde083 - __libc_start_main [INFO] [stderr] 34: 0x5590a0ad3b7e - _start [INFO] [stderr] 35: 0x0 - [INFO] running `Command { std: "docker" "inspect" "de4b205adbeeed523537b9130bf7bcfa53a549ee7185ad242507e33cbdff8baa", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "de4b205adbeeed523537b9130bf7bcfa53a549ee7185ad242507e33cbdff8baa", kill_on_drop: false }` [INFO] [stdout] de4b205adbeeed523537b9130bf7bcfa53a549ee7185ad242507e33cbdff8baa