Oct 12 05:04:48.082 INFO testing bio-0.22.0 against try#40d4795669493f1965de7c44029c69552134fe1f for rustdoc-test-static-cling
Oct 12 05:04:48.082 INFO running `"docker" "create" "-v" "/mnt/big/crater/./work/local/target-dirs/rustdoc-test-static-cling/worker-5/try#40d4795669493f1965de7c44029c69552134fe1f:/target:rw,Z" "-v" "/mnt/big/crater/./work/local/test-source/worker-5/rustdoc-test-static-cling/try#40d4795669493f1965de7c44029c69552134fe1f:/source:ro,Z" "-v" "/mnt/big/crater/./work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/./work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +40d4795669493f1965de7c44029c69552134fe1f-alt build --frozen" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"`
Oct 12 05:04:48.412 INFO blam! a1486afa2915b3bd371d82dc82c0fe8e7cf5393bc064ccf6c1dcbbefe1ec83dc
Oct 12 05:04:48.415 INFO running `"docker" "start" "-a" "a1486afa2915b3bd371d82dc82c0fe8e7cf5393bc064ccf6c1dcbbefe1ec83dc"`
Oct 12 05:04:49.372 INFO kablam! usermod: no changes
Oct 12 05:04:49.548 INFO kablam!    Compiling bv v0.7.4
Oct 12 05:04:49.552 INFO kablam!    Compiling ndarray v0.9.1
Oct 12 05:04:49.556 INFO kablam!    Compiling bytecount v0.3.2
Oct 12 05:04:49.588 INFO kablam!    Compiling newtype_derive v0.1.6
Oct 12 05:04:49.588 INFO kablam!    Compiling statrs v0.9.0
Oct 12 05:04:49.588 INFO kablam!    Compiling ordered-float v0.5.2
Oct 12 05:04:49.588 INFO kablam!    Compiling bio-types v0.4.0
Oct 12 05:04:49.588 INFO kablam!    Compiling vec_map v0.8.1
Oct 12 05:04:51.033 INFO kablam!    Compiling multimap v0.4.0
Oct 12 05:04:51.074 INFO kablam!    Compiling csv v1.0.2
Oct 12 05:05:03.380 INFO kablam!    Compiling bio v0.22.0 (/source)
Oct 12 05:05:04.761 INFO kablam! warning: unused `#[macro_use]` import
Oct 12 05:05:04.761 INFO kablam!    --> src/lib.rs:103:1
Oct 12 05:05:04.761 INFO kablam!     |
Oct 12 05:05:04.761 INFO kablam! 103 | #[macro_use]
Oct 12 05:05:04.761 INFO kablam!     | ^^^^^^^^^^^^
Oct 12 05:05:04.761 INFO kablam!     |
Oct 12 05:05:04.761 INFO kablam!     = note: #[warn(unused_imports)] on by default
Oct 12 05:05:04.761 INFO kablam! 
Oct 12 05:05:04.761 INFO kablam! warning: unused `#[macro_use]` import
Oct 12 05:05:04.761 INFO kablam!    --> src/lib.rs:117:1
Oct 12 05:05:04.761 INFO kablam!     |
Oct 12 05:05:04.761 INFO kablam! 117 | #[macro_use]
Oct 12 05:05:04.761 INFO kablam!     | ^^^^^^^^^^^^
Oct 12 05:05:04.762 INFO kablam! 
Oct 12 05:05:12.900 INFO kablam!     Finished dev [unoptimized + debuginfo] target(s) in 23.48s
Oct 12 05:05:12.900 INFO kablam! su: No module specific data is present
Oct 12 05:05:13.598 INFO running `"docker" "rm" "-f" "a1486afa2915b3bd371d82dc82c0fe8e7cf5393bc064ccf6c1dcbbefe1ec83dc"`
Oct 12 05:05:13.860 INFO blam! a1486afa2915b3bd371d82dc82c0fe8e7cf5393bc064ccf6c1dcbbefe1ec83dc
Oct 12 05:05:13.871 INFO running `"docker" "create" "-v" "/mnt/big/crater/./work/local/target-dirs/rustdoc-test-static-cling/worker-5/try#40d4795669493f1965de7c44029c69552134fe1f:/target:rw,Z" "-v" "/mnt/big/crater/./work/local/test-source/worker-5/rustdoc-test-static-cling/try#40d4795669493f1965de7c44029c69552134fe1f:/source:ro,Z" "-v" "/mnt/big/crater/./work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/./work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +40d4795669493f1965de7c44029c69552134fe1f-alt test --frozen --no-run" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"`
Oct 12 05:05:14.254 INFO blam! d4ebbd46c3207c8a7e97cd18bc5e92f1680a8e0fe7c08ce5d2dbe33d75579409
Oct 12 05:05:14.264 INFO running `"docker" "start" "-a" "d4ebbd46c3207c8a7e97cd18bc5e92f1680a8e0fe7c08ce5d2dbe33d75579409"`
Oct 12 05:05:15.136 INFO kablam! usermod: no changes
Oct 12 05:05:15.286 INFO kablam!    Compiling bio v0.22.0 (/source)
Oct 12 05:05:40.181 INFO kablam!     Finished dev [unoptimized + debuginfo] target(s) in 25.01s
Oct 12 05:05:40.191 INFO kablam! su: No module specific data is present
Oct 12 05:05:40.802 INFO running `"docker" "rm" "-f" "d4ebbd46c3207c8a7e97cd18bc5e92f1680a8e0fe7c08ce5d2dbe33d75579409"`
Oct 12 05:05:41.228 INFO blam! d4ebbd46c3207c8a7e97cd18bc5e92f1680a8e0fe7c08ce5d2dbe33d75579409
Oct 12 05:05:41.234 INFO running `"docker" "create" "-v" "/mnt/big/crater/./work/local/target-dirs/rustdoc-test-static-cling/worker-5/try#40d4795669493f1965de7c44029c69552134fe1f:/target:rw,Z" "-v" "/mnt/big/crater/./work/local/test-source/worker-5/rustdoc-test-static-cling/try#40d4795669493f1965de7c44029c69552134fe1f:/source:ro,Z" "-v" "/mnt/big/crater/./work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/./work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +40d4795669493f1965de7c44029c69552134fe1f-alt test --frozen" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"`
Oct 12 05:05:41.794 INFO blam! 919601afc72b5ecc3b14423820f52eed89a84e6fd985c519ff281c329fa94cab
Oct 12 05:05:41.795 INFO running `"docker" "start" "-a" "919601afc72b5ecc3b14423820f52eed89a84e6fd985c519ff281c329fa94cab"`
Oct 12 05:05:42.844 INFO kablam! usermod: no changes
Oct 12 05:05:43.028 INFO kablam!     Finished dev [unoptimized + debuginfo] target(s) in 0.16s
Oct 12 05:05:43.035 INFO kablam!      Running /target/debug/deps/bio-ee97fdcebca433a8
Oct 12 05:05:43.048 INFO blam! 
Oct 12 05:05:43.048 INFO blam! running 227 tests
Oct 12 05:05:43.068 INFO blam! test alignment::distance::tests::test_levenshtein_dist ... ok
Oct 12 05:05:43.068 INFO blam! test alignment::pairwise::banded::banded::test_aligner_new ... ok
Oct 12 05:05:43.068 INFO blam! test alignment::distance::tests::test_hamming_dist_good ... ok
Oct 12 05:05:43.074 INFO blam! test alignment::pairwise::banded::banded::test_band_add_entry ... ok
Oct 12 05:05:43.074 INFO blam! test alignment::pairwise::banded::banded::test_band_add_kmer ... ok
Oct 12 05:05:43.105 INFO blam! test alignment::pairwise::banded::banded::test_deletion ... ok
Oct 12 05:05:43.111 INFO blam! test alignment::pairwise::banded::banded::test_global_affine_ins ... ok
Oct 12 05:05:43.111 INFO blam! test alignment::pairwise::banded::banded::test_global_affine_ins2 ... ok
Oct 12 05:05:43.111 INFO blam! test alignment::pairwise::banded::banded::test_global_right_del ... ok
Oct 12 05:05:43.115 INFO blam! test alignment::pairwise::banded::banded::test_insert_in_between_semiglobal ... ok
Oct 12 05:05:43.115 INFO blam! test alignment::pairwise::banded::banded::test_global ... ok
Oct 12 05:05:43.122 INFO blam! test alignment::pairwise::banded::banded::test_blosum62 ... ok
Oct 12 05:05:43.131 INFO blam! test alignment::pairwise::banded::banded::test_band_ends_inside ... ok
Oct 12 05:05:43.141 INFO blam! test alignment::pairwise::banded::banded::test_insert_only_semiglobal ... ok
Oct 12 05:05:43.141 INFO blam! test alignment::pairwise::banded::banded::test_issue12_2 ... ok
Oct 12 05:05:43.155 INFO blam! test alignment::pairwise::banded::banded::test_issue11 ... ok
Oct 12 05:05:43.155 INFO blam! test alignment::pairwise::banded::banded::test_issue12_1 ... ok
Oct 12 05:05:43.155 INFO blam! test alignment::pairwise::banded::banded::test_left_aligned_del ... ok
Oct 12 05:05:43.155 INFO blam! test alignment::pairwise::banded::banded::test_left_aligned_ins ... ok
Oct 12 05:05:43.156 INFO blam! test alignment::pairwise::banded::banded::test_local ... ok
Oct 12 05:05:43.157 INFO blam! test alignment::pairwise::banded::banded::test_band_starts_inside ... ok
Oct 12 05:05:43.162 INFO blam! test alignment::pairwise::banded::banded::test_issue12_3 ... ok
Oct 12 05:05:43.166 INFO blam! test alignment::pairwise::banded::banded::test_local_empty ... ok
Oct 12 05:05:43.173 INFO blam! test alignment::pairwise::banded::banded::test_local_affine_ins2 ... ok
Oct 12 05:05:43.180 INFO blam! test alignment::pairwise::banded::banded::test_longer_string_all_operations ... ok
Oct 12 05:05:43.192 INFO blam! test alignment::pairwise::banded::banded::test_insertion ... ok
Oct 12 05:05:43.212 INFO blam! test alignment::pairwise::banded::banded::test_overhangs2 ... ok
Oct 12 05:05:43.216 INFO blam! test alignment::distance::tests::test_hamming_dist_bad ... ok
Oct 12 05:05:43.218 INFO blam! test alignment::pairwise::banded::banded::test_semiglobal ... ok
Oct 12 05:05:43.225 INFO blam! test alignment::pairwise::banded::banded::test_semiglobal_gap_open_lt_mismatch ... ok
Oct 12 05:05:43.233 INFO blam! test alignment::pairwise::banded::banded::test_semiglobal_simple ... ok
Oct 12 05:05:43.244 INFO blam! test alignment::pairwise::banded::banded::test_overhangs1 ... ok
Oct 12 05:05:43.248 INFO blam! test alignment::pairwise::banded::banded::test_xclip_prefix_custom ... ok
Oct 12 05:05:43.256 INFO blam! test alignment::pairwise::banded::banded::test_xclip_suffix_custom ... ok
Oct 12 05:05:43.264 INFO blam! test alignment::pairwise::banded::banded::test_band_is_fully_inside ... ok
Oct 12 05:05:43.264 INFO blam! test alignment::pairwise::banded::banded::test_overhangs3 ... ok
Oct 12 05:05:43.264 INFO blam! test alignment::pairwise::banded::banded::test_yclip_suffix_custom ... ok
Oct 12 05:05:43.272 INFO blam! test alignment::pairwise::tests::test_aligner_new ... ok
Oct 12 05:05:43.272 INFO blam! test alignment::pairwise::tests::test_blosum62 ... ok
Oct 12 05:05:43.272 INFO blam! test alignment::pairwise::tests::test_global ... ok
Oct 12 05:05:43.272 INFO blam! test alignment::pairwise::banded::banded::test_yclip_prefix_custom ... ok
Oct 12 05:05:43.274 INFO blam! test alignment::pairwise::tests::test_global_affine_ins ... ok
Oct 12 05:05:43.274 INFO blam! test alignment::pairwise::tests::test_global_right_del ... ok
Oct 12 05:05:43.284 INFO blam! test alignment::pairwise::banded::banded::test_substitutions ... ok
Oct 12 05:05:43.289 INFO blam! test alignment::pairwise::tests::test_global_affine_ins2 ... ok
Oct 12 05:05:43.289 INFO blam! test alignment::pairwise::tests::test_insert_in_between_semiglobal ... ok
Oct 12 05:05:43.289 INFO blam! test alignment::pairwise::tests::test_insert_only_semiglobal ... ok
Oct 12 05:05:43.289 INFO blam! test alignment::pairwise::tests::test_issue12_1 ... ok
Oct 12 05:05:43.290 INFO blam! test alignment::pairwise::tests::test_issue12_2 ... ok
Oct 12 05:05:43.290 INFO blam! test alignment::pairwise::tests::test_issue11 ... ok
Oct 12 05:05:43.290 INFO blam! test alignment::pairwise::tests::test_issue12_3 ... ok
Oct 12 05:05:43.291 INFO blam! test alignment::pairwise::tests::test_local_affine_ins2 ... ok
Oct 12 05:05:43.292 INFO blam! test alignment::pairwise::banded::banded::test_overhangs4 ... ok
Oct 12 05:05:43.296 INFO blam! test alignment::pairwise::tests::test_left_aligned_ins ... ok
Oct 12 05:05:43.296 INFO blam! test alignment::pairwise::tests::test_local ... ok
Oct 12 05:05:43.296 INFO blam! test alignment::pairwise::tests::test_longer_string_all_operations ... ok
Oct 12 05:05:43.296 INFO blam! test alignment::pairwise::tests::test_semiglobal_simple ... ok
Oct 12 05:05:43.308 INFO blam! test alignment::pairwise::tests::test_left_aligned_del ... ok
Oct 12 05:05:43.308 INFO blam! test alignment::pairwise::tests::test_xclip_suffix_custom ... ok
Oct 12 05:05:43.308 INFO blam! test alignment::pairwise::tests::test_yclip_prefix_custom ... ok
Oct 12 05:05:43.308 INFO blam! test alignment::pairwise::tests::test_yclip_suffix_custom ... ok
Oct 12 05:05:43.308 INFO blam! test alignment::pairwise::tests::traceback_cell ... ok
Oct 12 05:05:43.308 INFO blam! test alignment::sparse::sparse_alignment::test_expanded_matches ... ok
Oct 12 05:05:43.308 INFO blam! test alignment::sparse::sparse_alignment::test_find_kmer_matches ... ok
Oct 12 05:05:43.308 INFO blam! test alignment::sparse::sparse_alignment::test_lcskpp0 ... ok
Oct 12 05:05:43.310 INFO blam! test alignment::sparse::sparse_alignment::test_lcskpp1 ... ok
Oct 12 05:05:43.312 INFO blam! test alignment::pairwise::banded::banded::test_overhangs5 ... ok
Oct 12 05:05:43.312 INFO blam! test alignment::pairwise::tests::test_xclip_prefix_custom ... ok
Oct 12 05:05:43.312 INFO blam! test alignment::pairwise::tests::test_semiglobal_gap_open_lt_mismatch ... ok
Oct 12 05:05:43.312 INFO blam! test alignment::pairwise::tests::test_semiglobal ... ok
Oct 12 05:05:43.312 INFO blam! test alignment::pairwise::tests::test_scoring_from_scores ... ok
Oct 12 05:05:43.312 INFO blam! test alignment::sparse::sparse_alignment::test_lcskpp_same ... ok
Oct 12 05:05:43.312 INFO blam! test alignment::sparse::sparse_alignment::test_lcskpp2 ... ok
Oct 12 05:05:43.316 INFO blam! test alignment::pairwise::banded::banded::test_same ... ok
Oct 12 05:05:43.316 INFO blam! test alphabets::protein::tests::is_no_word ... ok
Oct 12 05:05:43.316 INFO blam! test alphabets::protein::tests::is_word ... ok
Oct 12 05:05:43.316 INFO blam! test alphabets::protein::tests::number_is_no_word ... ok
Oct 12 05:05:43.316 INFO blam! test alphabets::protein::tests::symbol_is_no_word ... ok
Oct 12 05:05:43.316 INFO blam! test alphabets::rna::tests::is_no_word ... ok
Oct 12 05:05:43.316 INFO blam! test alphabets::rna::tests::is_word ... ok
Oct 12 05:05:43.316 INFO blam! test alphabets::rna::tests::number_is_no_word ... ok
Oct 12 05:05:43.316 INFO blam! test alphabets::rna::tests::symbol_is_no_word ... ok
Oct 12 05:05:43.316 INFO blam! test alphabets::rna::tests::test_reverse_complement ... ok
Oct 12 05:05:43.316 INFO blam! test data_structures::bit_tree::test_bit_tree::test_bit_tree ... ok
Oct 12 05:05:43.316 INFO blam! test data_structures::bitenc::tests::test_bitenc ... ok
Oct 12 05:05:43.324 INFO blam! test alignment::sparse::sparse_alignment::test_sdpkpp_same ... ok
Oct 12 05:05:43.324 INFO blam! test alignment::sparse::sparse_alignment::test_sdp ... ok
Oct 12 05:05:43.324 INFO blam! test alignment::sparse::sparse_alignment::test_sdp2 ... ok
Oct 12 05:05:43.324 INFO blam! test data_structures::bwt::tests::test_invert_bwt ... ok
Oct 12 05:05:43.324 INFO blam! test data_structures::bwt::tests::test_bwtfind ... ok
Oct 12 05:05:43.324 INFO blam! test data_structures::fmindex::tests::test_fmindex ... ok
Oct 12 05:05:43.324 INFO blam! test data_structures::bwt::tests::test_occ ... ok
Oct 12 05:05:43.324 INFO blam! test data_structures::bitenc::tests::test_push_values ... ok
Oct 12 05:05:43.324 INFO blam! test data_structures::bitenc::tests::test_issue29 ... ok
Oct 12 05:05:43.324 INFO blam! test data_structures::fmindex::tests::test_init_interval ... ok
Oct 12 05:05:43.324 INFO blam! test data_structures::interval_tree::tests::from_iterator ... ok
Oct 12 05:05:43.324 INFO blam! test data_structures::fmindex::tests::test_smems ... ok
Oct 12 05:05:43.336 INFO blam! test alignment::sparse::sparse_alignment::test_lcskpp_tandem_repeat ... ok
Oct 12 05:05:43.337 INFO blam! test data_structures::interval_tree::tests::iter_mut ... ok
Oct 12 05:05:43.360 INFO blam! test data_structures::interval_tree::tests::test_insertion_and_intersection ... ok
Oct 12 05:05:43.360 INFO blam! test alignment::sparse::sparse_alignment::test_sdpkpp_tandem_repeat ... ok
Oct 12 05:05:43.388 INFO blam! test alignment::sparse::sparse_alignment::test_sdp1 ... ok
Oct 12 05:05:43.397 INFO blam! test data_structures::qgram_index::tests::test_exact_matches ... ok
Oct 12 05:05:43.397 INFO blam! test data_structures::rank_select::tests::test_rank_select ... ok
Oct 12 05:05:43.397 INFO blam! test data_structures::rank_select::tests::test_select ... ok
Oct 12 05:05:43.404 INFO blam! test data_structures::rank_select::tests::test_single_select ... ok
Oct 12 05:05:43.405 INFO blam! test data_structures::suffix_array::tests::test_buckets ... ok
Oct 12 05:05:43.413 INFO blam! test data_structures::qgram_index::tests::test_matches ... ok
Oct 12 05:05:43.413 INFO blam! test data_structures::qgram_index::tests::test_qgram_matches ... ok
Oct 12 05:05:43.413 INFO blam! test data_structures::qgram_index::tests::test_exact_matches_self ... ok
Oct 12 05:05:43.413 INFO blam! test data_structures::interval_tree::tests::zero_width_ranges ... ok
Oct 12 05:05:43.413 INFO blam! test data_structures::suffix_array::tests::test_handles_sentinels_properly ... ok
Oct 12 05:05:43.413 INFO blam! test data_structures::suffix_array::tests::test_issue10_1 ... ok
Oct 12 05:05:43.413 INFO blam! test data_structures::suffix_array::tests::test_issue10_2 ... ok
Oct 12 05:05:43.413 INFO blam! test data_structures::suffix_array::tests::test_pos_types ... ok
Oct 12 05:05:43.414 INFO blam! test io::bed::tests::test_writer ... ok
Oct 12 05:05:43.415 INFO blam! test io::fasta::tests::test_index_sequences ... ok
Oct 12 05:05:43.416 INFO blam! test io::bed::tests::test_reader ... ok
Oct 12 05:05:43.420 INFO blam! test data_structures::suffix_array::tests::test_lms_pos ... ok
Oct 12 05:05:43.420 INFO blam! test data_structures::suffix_array::tests::test_pos ... ok
Oct 12 05:05:43.438 INFO blam! test io::fasta::tests::test_indexed_reader ... ok
Oct 12 05:05:43.438 INFO blam! test io::fasta::tests::test_indexed_reader_all ... ok
Oct 12 05:05:43.438 INFO blam! test io::fasta::tests::test_indexed_reader_bad_reader ... ok
Oct 12 05:05:43.438 INFO blam! test io::fasta::tests::test_indexed_reader_crlf ... ok
Oct 12 05:05:43.439 INFO blam! test io::fasta::tests::test_indexed_reader_by_rid_all ... ok
Oct 12 05:05:43.439 INFO blam! test io::fasta::tests::test_indexed_reader_crlf_by_rid_all ... ok
Oct 12 05:05:43.439 INFO blam! test data_structures::suffix_array::tests::test_sorts_lexically ... ok
Oct 12 05:05:43.440 INFO blam! test io::fasta::tests::test_indexed_reader_iter_by_rid_all ... ok
Oct 12 05:05:43.448 INFO blam! test io::fasta::tests::test_indexed_reader_iter_all ... ok
Oct 12 05:05:43.448 INFO blam! test io::fasta::tests::test_indexed_reader_crlf_all ... ok
Oct 12 05:05:43.448 INFO blam! test data_structures::fmindex::tests::test_issue39 ... ok
Oct 12 05:05:43.453 INFO blam! test data_structures::interval_tree::tests::test_insertion_and_intersection_2 ... ok
Oct 12 05:05:43.453 INFO blam! test io::fasta::tests::test_indexed_reader_iter ... ok
Oct 12 05:05:43.453 INFO blam! test io::fasta::tests::test_indexed_reader_iter_crlf_all ... ok
Oct 12 05:05:43.453 INFO blam! test io::fasta::tests::test_indexed_reader_iter_size_hint ... ok
Oct 12 05:05:43.453 INFO blam! test io::fasta::tests::test_indexed_reader_iter_crlf ... ok
Oct 12 05:05:43.453 INFO blam! test io::fasta::tests::test_indexed_reader_iter_crlf_by_rid_all ... ok
Oct 12 05:05:43.453 INFO blam! test io::fasta::tests::test_indexed_reader_no_fetch_read_fails ... ok
Oct 12 05:05:43.453 INFO blam! test io::fasta::tests::test_indexed_reader_read_seek_fails ... ok
Oct 12 05:05:43.453 INFO blam! test io::fasta::tests::test_indexed_reader_iter_read_fails ... ok
Oct 12 05:05:43.453 INFO blam! test io::fasta::tests::test_indexed_reader_no_fetch_read_iter_fails ... ok
Oct 12 05:05:43.460 INFO blam! test io::fasta::tests::test_reader_no_id ... ok
Oct 12 05:05:43.460 INFO blam! test io::fasta::tests::test_indexed_reader_no_trailing_lf ... ok
Oct 12 05:05:43.460 INFO blam! test io::fasta::tests::test_indexed_reader_read_read_fails ... ok
Oct 12 05:05:43.460 INFO blam! test io::fasta::tests::test_reader ... ok
Oct 12 05:05:43.460 INFO blam! test io::fasta::tests::test_reader_read_fails_iter ... ok
Oct 12 05:05:43.460 INFO blam! test io::fasta::tests::test_reader_wrong_header ... ok
Oct 12 05:05:43.460 INFO blam! test io::fasta::tests::test_writer ... ok
Oct 12 05:05:43.460 INFO blam! test io::fastq::tests::test_reader ... ok
Oct 12 05:05:43.460 INFO blam! test io::fastq::tests::test_record_with_attrs ... ok
Oct 12 05:05:43.460 INFO blam! test io::fasta::tests::test_record_with_attrs ... ok
Oct 12 05:05:43.460 INFO blam! test io::fasta::tests::test_indexed_reader_iter_seek_fails ... ok
Oct 12 05:05:43.460 INFO blam! test io::fastq::tests::test_writer ... ok
Oct 12 05:05:43.468 INFO blam! test io::gff::tests::test_convert_gtf2_to_gff3 ... ok
Oct 12 05:05:43.468 INFO blam! test io::gff::tests::test_reader_gtf2_2 ... ok
Oct 12 05:05:43.468 INFO blam! test io::fasta::tests::test_indexed_reader_reused_buffer ... ok
Oct 12 05:05:43.468 INFO blam! test io::fasta::tests::test_reader_read_fails ... ok
Oct 12 05:05:43.468 INFO blam! test io::fasta::tests::test_reader_non_ascii_sequence ... ok
Oct 12 05:05:43.468 INFO blam! test alignment::pairwise::banded::banded::test_big ... ok
Oct 12 05:05:43.468 INFO blam! test io::gff::tests::test_reader_gff3 ... ok
Oct 12 05:05:43.477 INFO blam! test pattern_matching::horspool::tests::test_find_all ... ok
Oct 12 05:05:43.477 INFO blam! test pattern_matching::horspool::tests::test_shift ... ok
Oct 12 05:05:43.477 INFO blam! test pattern_matching::bom::tests::test_find_all ... ok
Oct 12 05:05:43.477 INFO blam! test io::gff::tests::test_reader_gtf2 ... ok
Oct 12 05:05:43.477 INFO blam! test pattern_matching::kmp::tests::test_find_all ... ok
Oct 12 05:05:43.477 INFO blam! test pattern_matching::kmp::tests::test_delta ... ok
Oct 12 05:05:43.477 INFO blam! test pattern_matching::kmp::tests::test_lps ... ok
Oct 12 05:05:43.477 INFO blam! test pattern_matching::myers::tests::test_distance ... ok
Oct 12 05:05:43.486 INFO blam! test pattern_matching::myers::tests::test_find_all_end ... ok
Oct 12 05:05:43.486 INFO blam! test pattern_matching::bom::tests::test_delta ... ok
Oct 12 05:05:43.486 INFO blam! test pattern_matching::kmp::tests::test_find_all_at_start ... ok
Oct 12 05:05:43.486 INFO blam! test pattern_matching::bndm::tests::test_find_all ... ok
Oct 12 05:05:43.489 INFO blam! test pattern_matching::pssm::dnamotif::tests::find_motif ... ok
Oct 12 05:05:43.489 INFO blam! test pattern_matching::pssm::dnamotif::tests::test_inconsist_err ... ok
Oct 12 05:05:43.489 INFO blam! test pattern_matching::pssm::dnamotif::tests::simple_pssm ... ok
Oct 12 05:05:43.492 INFO blam! test io::gff::tests::test_writer_gff3 ... ok
Oct 12 05:05:43.492 INFO blam! test io::gff::tests::test_reader_gtf2_dup_attr_keys ... ok
Oct 12 05:05:43.493 INFO blam! test pattern_matching::pssm::protmotif::tests::test_mono_err ... ok
Oct 12 05:05:43.494 INFO blam! test pattern_matching::pssm::protmotif::tests::test_info_content ... ok
Oct 12 05:05:43.494 INFO blam! test pattern_matching::shift_and::tests::test_find_all ... ok
Oct 12 05:05:43.494 INFO blam! test pattern_matching::pssm::protmotif::tests::test_inconsist_err ... ok
Oct 12 05:05:43.496 INFO blam! test pattern_matching::pssm::dnamotif::tests::test_mono_err ... ok
Oct 12 05:05:43.496 INFO blam! test pattern_matching::pssm::dnamotif::tests::test_info_content ... ok
Oct 12 05:05:43.497 INFO blam! test pattern_matching::myers::tests::test_long ... ok
Oct 12 05:05:43.497 INFO blam! test pattern_matching::ukkonen::tests::test_find_start ... ok
Oct 12 05:05:43.497 INFO blam! test pattern_matching::ukkonen::tests::test_find_all_end ... ok
Oct 12 05:05:43.497 INFO blam! test io::gff::tests::test_writer_gtf2 ... ok
Oct 12 05:05:43.498 INFO blam! test pattern_matching::pssm::protmotif::tests::test_scoring ... ok
Oct 12 05:05:43.498 INFO blam! test scores::pam40::tests::test_pam40 ... ok
Oct 12 05:05:43.498 INFO blam! test seq_analysis::orf::tests::test_orf ... ok
Oct 12 05:05:43.498 INFO blam! test stats::bayesian::tests::test_expected_fdr ... ok
Oct 12 05:05:43.499 INFO blam! test stats::hmm::tests::test_discrete_backward_toy_example ... ok
Oct 12 05:05:43.499 INFO blam! test scores::pam120::tests::test_pam120 ... ok
Oct 12 05:05:43.499 INFO blam! test scores::pam200::tests::test_pam200 ... ok
Oct 12 05:05:43.499 INFO blam! test scores::pam250::tests::test_pam250 ... ok
Oct 12 05:05:43.500 INFO blam! test scores::blosum62::tests::test_blosum62 ... ok
Oct 12 05:05:43.500 INFO blam! test stats::combinatorics::tests::test_comb_scaled ... ok
Oct 12 05:05:43.500 INFO blam! test stats::combinatorics::tests::test_comb ... ok
Oct 12 05:05:43.500 INFO blam! test stats::hmm::tests::test_discrete_viterbi_toy_example ... ok
Oct 12 05:05:43.501 INFO blam! test stats::hmm::tests::test_gaussian_forward_equals_backward_simple_example ... ok
Oct 12 05:05:43.501 INFO blam! test stats::hmm::tests::test_gaussian_backward_simple_example ... ok
Oct 12 05:05:43.501 INFO blam! test stats::pairhmm::tests::test_mismatch ... ok
Oct 12 05:05:43.502 INFO blam! test stats::hmm::tests::test_gaussian_viterbi_simple_example ... ok
Oct 12 05:05:43.502 INFO blam! test stats::pairhmm::tests::test_same ... ok
Oct 12 05:05:43.502 INFO blam! test stats::probs::cdf::test::test_cdf ... ok
Oct 12 05:05:43.502 INFO blam! test stats::probs::tests::test_cap_numerical_overshoot ... ok
Oct 12 05:05:43.503 INFO blam! test stats::probs::tests::test_empty_sum ... ok
Oct 12 05:05:43.503 INFO blam! test stats::hmm::tests::test_gaussian_forward_simple_example ... ok
Oct 12 05:05:43.503 INFO blam! test stats::probs::tests::test_one_minus ... ok
Oct 12 05:05:43.503 INFO blam! test stats::probs::tests::test_cumsum ... ok
Oct 12 05:05:43.504 INFO blam! test stats::pairhmm::tests::test_insertion ... ok
Oct 12 05:05:43.504 INFO blam! test stats::probs::tests::test_simpsons_integrate ... ok
Oct 12 05:05:43.504 INFO blam! test stats::probs::tests::test_sub ... ok
Oct 12 05:05:43.504 INFO blam! test stats::probs::tests::test_sum ... ok
Oct 12 05:05:43.505 INFO blam! test stats::probs::tests::test_zero ... ok
Oct 12 05:05:43.508 INFO blam! test stats::probs::tests::test_trapezoidal_integrate ... ok
Oct 12 05:05:43.508 INFO blam! test stats::probs::tests::test_sum_one_zero ... ok
Oct 12 05:05:43.508 INFO blam! test stats::pairhmm::tests::test_deletion ... ok
Oct 12 05:05:43.508 INFO blam! test stats::hmm::tests::test_discrete_forward_toy_example ... ok
Oct 12 05:05:43.510 INFO blam! test utils::tests::test_strand ... ok
Oct 12 05:05:43.510 INFO blam! test utils::interval::tests::range_interval_conversions ... ok
Oct 12 05:05:43.512 INFO blam! test utils::text::tests::test_print_sequence ... ok
Oct 12 05:05:43.512 INFO blam! test utils::tests::test_prescan ... ok
Oct 12 05:05:43.512 INFO blam! test utils::tests::test_scan ... ok
Oct 12 05:05:43.513 INFO blam! test stats::probs::tests::test_cap_numerical_overshoot_panic ... ok
Oct 12 05:05:43.517 INFO blam! test utils::interval::tests::negative_width_range ... ok
Oct 12 05:05:43.600 INFO blam! test stats::hmm::tests::test_discrete_forward_equals_backward_toy_example ... ok
Oct 12 05:05:43.600 INFO blam! 
Oct 12 05:05:43.600 INFO blam! test result: ok. 227 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
Oct 12 05:05:43.600 INFO blam! 
Oct 12 05:05:43.602 INFO kablam!    Doc-tests bio
Oct 12 05:05:44.870 INFO blam! 
Oct 12 05:05:44.870 INFO blam! running 42 tests
Oct 12 05:06:01.720 INFO blam! test <::custom_derive::custom_derive macros> - stats::probs::PHREDProb (line 46) ... ok
Oct 12 05:06:02.125 INFO blam! test <::custom_derive::custom_derive macros> - stats::probs::Prob (line 46) ... ok
Oct 12 05:06:02.353 INFO blam! test src/alignment/distance.rs - alignment::distance::hamming (line 16) ... ok
Oct 12 05:06:02.716 INFO blam! test <::custom_derive::custom_derive macros> - stats::probs::LogProb (line 46) ... ok
Oct 12 05:06:03.177 INFO blam! test src/alignment/distance.rs - alignment::distance::levenshtein (line 48) ... ok
Oct 12 05:06:03.548 INFO blam! test src/alignment/pairwise/banded.rs - alignment::pairwise::banded (line 20) ... ok
Oct 12 05:06:04.200 INFO blam! test src/alignment/sparse.rs - alignment::sparse (line 18) ... ok
Oct 12 05:06:06.388 INFO blam! test src/alignment/pairwise/mod.rs - alignment::pairwise (line 13) ... ok
Oct 12 05:06:13.000 INFO blam! test src/alphabets/dna.rs - alphabets::dna (line 10) ... ok
Oct 12 05:06:15.460 INFO blam! test src/alphabets/protein.rs - alphabets::protein (line 10) ... ok
Oct 12 05:06:15.649 INFO blam! test src/alphabets/mod.rs - alphabets (line 10) ... ok
Oct 12 05:06:16.564 INFO blam! test src/data_structures/bitenc.rs - data_structures::bitenc (line 11) ... ok
Oct 12 05:06:16.930 INFO blam! test src/data_structures/bwt.rs - data_structures::bwt::bwt (line 42) ... ok
Oct 12 05:06:18.697 INFO blam! test src/alphabets/rna.rs - alphabets::rna (line 10) ... ok
Oct 12 05:06:18.705 INFO blam! test src/data_structures/bit_tree.rs - data_structures::bit_tree (line 12) ... ok
Oct 12 05:06:19.868 INFO blam! test src/data_structures/fmindex.rs - data_structures::fmindex (line 12) ... ok
Oct 12 05:06:21.190 INFO blam! test src/data_structures/fmindex.rs - data_structures::fmindex (line 34) ... ok
Oct 12 05:06:28.968 INFO blam! test src/data_structures/fmindex.rs - data_structures::fmindex::FMDIndex<DBWT, DLess, DOcc>::smems (line 266) ... ok
Oct 12 05:06:28.968 INFO blam! test src/data_structures/fmindex.rs - data_structures::fmindex::FMIndexable::backward_search (line 98) ... ok
Oct 12 05:06:29.740 INFO blam! test src/data_structures/interval_tree.rs - data_structures::interval_tree (line 14) ... ok
Oct 12 05:06:30.720 INFO blam! test src/data_structures/rank_select.rs - data_structures::rank_select (line 11) ... ok
Oct 12 05:06:31.809 INFO blam! test src/data_structures/qgram_index.rs - data_structures::qgram_index (line 10) ... ok
Oct 12 05:06:32.614 INFO blam! test src/data_structures/smallints.rs - data_structures::smallints (line 13) ... ok
Oct 12 05:06:32.897 INFO blam! test src/data_structures/suffix_array.rs - data_structures::suffix_array::lcp (line 239) ... ok
Oct 12 05:06:33.008 INFO blam! test src/data_structures/suffix_array.rs - data_structures::suffix_array::shortest_unique_substrings (line 304) ... ok
Oct 12 05:06:40.318 INFO blam! test src/io/fastq.rs - io::fastq (line 10) ... ok
Oct 12 05:06:40.744 INFO blam! test src/data_structures/suffix_array.rs - data_structures::suffix_array::suffix_array (line 198) ... ok
Oct 12 05:06:40.792 INFO blam! test src/io/gff.rs - io::gff (line 14) ... ok
Oct 12 05:06:40.931 INFO blam! test src/io/bed.rs - io::bed (line 10) ... ok
Oct 12 05:06:41.272 INFO blam! test src/io/fasta.rs - io::fasta (line 10) ... ok
Oct 12 05:06:41.324 INFO blam! test src/pattern_matching/bndm.rs - pattern_matching::bndm (line 12) ... ok
Oct 12 05:06:43.292 INFO blam! test src/lib.rs -  (line 31) ... ok
Oct 12 05:06:45.922 INFO blam! test src/lib.rs -  (line 54) ... ok
Oct 12 05:06:52.040 INFO blam! test src/pattern_matching/shift_and.rs - pattern_matching::shift_and (line 12) ... ok
Oct 12 05:06:52.287 INFO blam! test src/pattern_matching/kmp.rs - pattern_matching::kmp (line 16) ... ok
Oct 12 05:06:52.672 INFO blam! test src/pattern_matching/bom.rs - pattern_matching::bom (line 12) ... ok
Oct 12 05:06:53.734 INFO blam! test src/pattern_matching/ukkonen.rs - pattern_matching::ukkonen (line 17) ... ok
Oct 12 05:06:54.014 INFO blam! test src/seq_analysis/orf.rs - seq_analysis::orf (line 12) ... ok
Oct 12 05:06:54.345 INFO blam! test src/pattern_matching/horspool.rs - pattern_matching::horspool (line 32) ... ok
Oct 12 05:06:54.433 INFO blam! test src/pattern_matching/myers.rs - pattern_matching::myers (line 13) ... ok
Oct 12 05:06:54.776 INFO blam! test src/stats/hmm.rs - stats::hmm (line 15) ... ok
Oct 12 05:06:57.259 INFO blam! test src/stats/hmm.rs - stats::hmm (line 37) ... ok
Oct 12 05:06:57.260 INFO blam! 
Oct 12 05:06:57.260 INFO blam! test result: ok. 42 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
Oct 12 05:06:57.260 INFO blam! 
Oct 12 05:06:57.293 INFO kablam! su: No module specific data is present
Oct 12 05:06:58.514 INFO running `"docker" "rm" "-f" "919601afc72b5ecc3b14423820f52eed89a84e6fd985c519ff281c329fa94cab"`
Oct 12 05:06:58.892 INFO blam! 919601afc72b5ecc3b14423820f52eed89a84e6fd985c519ff281c329fa94cab