Oct 11 19:26:15.239 INFO testing heme-0.3.1 against master#0e07c4281c343e9e15a0a8fca79538ad1a8eb513 for rustdoc-test-static-cling
Oct 11 19:26:15.240 INFO running: cargo +0e07c4281c343e9e15a0a8fca79538ad1a8eb513-alt build --frozen
Oct 11 19:26:15.241 INFO running `"docker" "create" "-v" "/mnt/big/crater/./work/local/test-source/worker-3/rustdoc-test-static-cling/master#0e07c4281c343e9e15a0a8fca79538ad1a8eb513:/source:ro,Z" "-v" "/mnt/big/crater/./work/local/target-dirs/rustdoc-test-static-cling/worker-3/master#0e07c4281c343e9e15a0a8fca79538ad1a8eb513:/target:rw,Z" "-v" "/mnt/big/crater/./work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/./work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "CMD=cargo +0e07c4281c343e9e15a0a8fca79538ad1a8eb513-alt build --frozen" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-m" "1536M" "--network" "none" "crater"`
Oct 11 19:26:15.664 INFO blam! 63811c67c612879b8ffe6c02ba329cde91696019b95376105580f69a3bcbca9b
Oct 11 19:26:15.676 INFO running `"docker" "start" "-a" "63811c67c612879b8ffe6c02ba329cde91696019b95376105580f69a3bcbca9b"`
Oct 11 19:26:16.534 INFO kablam! usermod: no changes
Oct 11 19:26:16.591 INFO kablam!    Compiling heme v0.3.1 (/source)
Oct 11 19:26:17.332 INFO kablam! warning: unused import: `std::collections::HashMap`
Oct 11 19:26:17.332 INFO kablam!  --> src/sampling.rs:1:5
Oct 11 19:26:17.332 INFO kablam!   |
Oct 11 19:26:17.332 INFO kablam! 1 | use std::collections::HashMap; 
Oct 11 19:26:17.332 INFO kablam!   |     ^^^^^^^^^^^^^^^^^^^^^^^^^
Oct 11 19:26:17.332 INFO kablam!   |
Oct 11 19:26:17.332 INFO kablam!   = note: #[warn(unused_imports)] on by default
Oct 11 19:26:17.332 INFO kablam! 
Oct 11 19:26:17.399 INFO kablam! warning: unused variable: `protocol_name`
Oct 11 19:26:17.399 INFO kablam!   --> src/sampling.rs:20:21
Oct 11 19:26:17.399 INFO kablam!    |
Oct 11 19:26:17.399 INFO kablam! 20 | pub fn get_protocol(protocol_name: &str) -> Protocol {
Oct 11 19:26:17.399 INFO kablam!    |                     ^^^^^^^^^^^^^ help: consider using `_protocol_name` instead
Oct 11 19:26:17.399 INFO kablam!    |
Oct 11 19:26:17.399 INFO kablam!    = note: #[warn(unused_variables)] on by default
Oct 11 19:26:17.399 INFO kablam! 
Oct 11 19:26:17.399 INFO kablam! warning: unused variable: `a1`
Oct 11 19:26:17.399 INFO kablam!   --> src/scoring.rs:24:39
Oct 11 19:26:17.399 INFO kablam!    |
Oct 11 19:26:17.399 INFO kablam! 24 | pub fn calculate_lennard_jones_energy(a1: &Atom, a2: &Atom, r: f64) -> f64 {
Oct 11 19:26:17.399 INFO kablam!    |                                       ^^ help: consider using `_a1` instead
Oct 11 19:26:17.399 INFO kablam! 
Oct 11 19:26:17.399 INFO kablam! warning: unused variable: `a2`
Oct 11 19:26:17.399 INFO kablam!   --> src/scoring.rs:24:50
Oct 11 19:26:17.399 INFO kablam!    |
Oct 11 19:26:17.399 INFO kablam! 24 | pub fn calculate_lennard_jones_energy(a1: &Atom, a2: &Atom, r: f64) -> f64 {
Oct 11 19:26:17.399 INFO kablam!    |                                                  ^^ help: consider using `_a2` instead
Oct 11 19:26:17.399 INFO kablam! 
Oct 11 19:26:17.408 INFO kablam! warning: field is never used: `atoms`
Oct 11 19:26:17.408 INFO kablam!   --> src/conformation.rs:52:5
Oct 11 19:26:17.408 INFO kablam!    |
Oct 11 19:26:17.408 INFO kablam! 52 |     atoms: Vec<Atom>,
Oct 11 19:26:17.408 INFO kablam!    |     ^^^^^^^^^^^^^^^^
Oct 11 19:26:17.408 INFO kablam!    |
Oct 11 19:26:17.408 INFO kablam!    = note: #[warn(dead_code)] on by default
Oct 11 19:26:17.408 INFO kablam! 
Oct 11 19:26:17.408 INFO kablam! warning: field is never used: `residue_name`
Oct 11 19:26:17.408 INFO kablam!   --> src/conformation.rs:53:5
Oct 11 19:26:17.408 INFO kablam!    |
Oct 11 19:26:17.408 INFO kablam! 53 |     residue_name: String,
Oct 11 19:26:17.408 INFO kablam!    |     ^^^^^^^^^^^^^^^^^^^^
Oct 11 19:26:17.408 INFO kablam! 
Oct 11 19:26:17.408 INFO kablam! warning: field is never used: `residue_index`
Oct 11 19:26:17.408 INFO kablam!   --> src/conformation.rs:54:5
Oct 11 19:26:17.408 INFO kablam!    |
Oct 11 19:26:17.408 INFO kablam! 54 |     residue_index: i32,
Oct 11 19:26:17.408 INFO kablam!    |     ^^^^^^^^^^^^^^^^^^
Oct 11 19:26:17.408 INFO kablam! 
Oct 11 19:26:19.128 INFO kablam!     Finished dev [unoptimized + debuginfo] target(s) in 2.56s
Oct 11 19:26:19.128 INFO kablam! su: No module specific data is present
Oct 11 19:26:19.648 INFO running `"docker" "rm" "-f" "63811c67c612879b8ffe6c02ba329cde91696019b95376105580f69a3bcbca9b"`
Oct 11 19:26:19.912 INFO blam! 63811c67c612879b8ffe6c02ba329cde91696019b95376105580f69a3bcbca9b
Oct 11 19:26:19.924 INFO running: cargo +0e07c4281c343e9e15a0a8fca79538ad1a8eb513-alt test --frozen --no-run
Oct 11 19:26:19.926 INFO running `"docker" "create" "-v" "/mnt/big/crater/./work/local/test-source/worker-3/rustdoc-test-static-cling/master#0e07c4281c343e9e15a0a8fca79538ad1a8eb513:/source:ro,Z" "-v" "/mnt/big/crater/./work/local/target-dirs/rustdoc-test-static-cling/worker-3/master#0e07c4281c343e9e15a0a8fca79538ad1a8eb513:/target:rw,Z" "-v" "/mnt/big/crater/./work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/./work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "CMD=cargo +0e07c4281c343e9e15a0a8fca79538ad1a8eb513-alt test --frozen --no-run" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-m" "1536M" "--network" "none" "crater"`
Oct 11 19:26:20.362 INFO blam! 6c37e59c831d33879d47f9f8146507d1e99ca431a85bad9bf6d327110cd30f2c
Oct 11 19:26:20.365 INFO running `"docker" "start" "-a" "6c37e59c831d33879d47f9f8146507d1e99ca431a85bad9bf6d327110cd30f2c"`
Oct 11 19:26:21.211 INFO kablam! usermod: no changes
Oct 11 19:26:21.244 INFO kablam!    Compiling heme v0.3.1 (/source)
Oct 11 19:26:22.277 INFO kablam! warning: unused import: `std::collections::HashMap`
Oct 11 19:26:22.277 INFO kablam!  --> src/sampling.rs:1:5
Oct 11 19:26:22.277 INFO kablam!   |
Oct 11 19:26:22.277 INFO kablam! 1 | use std::collections::HashMap; 
Oct 11 19:26:22.277 INFO kablam!   |     ^^^^^^^^^^^^^^^^^^^^^^^^^
Oct 11 19:26:22.277 INFO kablam!   |
Oct 11 19:26:22.277 INFO kablam!   = note: #[warn(unused_imports)] on by default
Oct 11 19:26:22.277 INFO kablam! 
Oct 11 19:26:22.360 INFO kablam! warning: unused variable: `protocol_name`
Oct 11 19:26:22.360 INFO kablam!   --> src/sampling.rs:20:21
Oct 11 19:26:22.360 INFO kablam!    |
Oct 11 19:26:22.361 INFO kablam! 20 | pub fn get_protocol(protocol_name: &str) -> Protocol {
Oct 11 19:26:22.361 INFO kablam!    |                     ^^^^^^^^^^^^^ help: consider using `_protocol_name` instead
Oct 11 19:26:22.361 INFO kablam!    |
Oct 11 19:26:22.361 INFO kablam!    = note: #[warn(unused_variables)] on by default
Oct 11 19:26:22.361 INFO kablam! 
Oct 11 19:26:22.361 INFO kablam! warning: unused variable: `a1`
Oct 11 19:26:22.361 INFO kablam!   --> src/scoring.rs:24:39
Oct 11 19:26:22.361 INFO kablam!    |
Oct 11 19:26:22.361 INFO kablam! 24 | pub fn calculate_lennard_jones_energy(a1: &Atom, a2: &Atom, r: f64) -> f64 {
Oct 11 19:26:22.361 INFO kablam!    |                                       ^^ help: consider using `_a1` instead
Oct 11 19:26:22.361 INFO kablam! 
Oct 11 19:26:22.361 INFO kablam! warning: unused variable: `a2`
Oct 11 19:26:22.361 INFO kablam!   --> src/scoring.rs:24:50
Oct 11 19:26:22.361 INFO kablam!    |
Oct 11 19:26:22.361 INFO kablam! 24 | pub fn calculate_lennard_jones_energy(a1: &Atom, a2: &Atom, r: f64) -> f64 {
Oct 11 19:26:22.361 INFO kablam!    |                                                  ^^ help: consider using `_a2` instead
Oct 11 19:26:22.361 INFO kablam! 
Oct 11 19:26:22.385 INFO kablam! warning: field is never used: `atoms`
Oct 11 19:26:22.385 INFO kablam!   --> src/conformation.rs:52:5
Oct 11 19:26:22.385 INFO kablam!    |
Oct 11 19:26:22.385 INFO kablam! 52 |     atoms: Vec<Atom>,
Oct 11 19:26:22.385 INFO kablam!    |     ^^^^^^^^^^^^^^^^
Oct 11 19:26:22.385 INFO kablam!    |
Oct 11 19:26:22.385 INFO kablam!    = note: #[warn(dead_code)] on by default
Oct 11 19:26:22.385 INFO kablam! 
Oct 11 19:26:22.385 INFO kablam! warning: field is never used: `residue_name`
Oct 11 19:26:22.385 INFO kablam!   --> src/conformation.rs:53:5
Oct 11 19:26:22.385 INFO kablam!    |
Oct 11 19:26:22.385 INFO kablam! 53 |     residue_name: String,
Oct 11 19:26:22.385 INFO kablam!    |     ^^^^^^^^^^^^^^^^^^^^
Oct 11 19:26:22.385 INFO kablam! 
Oct 11 19:26:22.385 INFO kablam! warning: field is never used: `residue_index`
Oct 11 19:26:22.385 INFO kablam!   --> src/conformation.rs:54:5
Oct 11 19:26:22.385 INFO kablam!    |
Oct 11 19:26:22.385 INFO kablam! 54 |     residue_index: i32,
Oct 11 19:26:22.385 INFO kablam!    |     ^^^^^^^^^^^^^^^^^^
Oct 11 19:26:22.385 INFO kablam! 
Oct 11 19:26:22.396 INFO kablam! warning: function `H` should have a snake case name such as `h`
Oct 11 19:26:22.396 INFO kablam!    --> src/io.rs:152:9
Oct 11 19:26:22.396 INFO kablam!     |
Oct 11 19:26:22.396 INFO kablam! 152 | /         fn H(l: &f64) -> f64 {
Oct 11 19:26:22.396 INFO kablam! 153 | |
Oct 11 19:26:22.396 INFO kablam! 154 | |             // bounds of N choose lN
Oct 11 19:26:22.396 INFO kablam! 155 | |             // can be found by 2^(n*H(l))
Oct 11 19:26:22.396 INFO kablam! ...   |
Oct 11 19:26:22.396 INFO kablam! 161 | |             l.ln() - value * value.ln()
Oct 11 19:26:22.396 INFO kablam! 162 | |         }
Oct 11 19:26:22.396 INFO kablam!     | |_________^
Oct 11 19:26:22.396 INFO kablam!     |
Oct 11 19:26:22.396 INFO kablam!     = note: #[warn(non_snake_case)] on by default
Oct 11 19:26:22.396 INFO kablam! 
Oct 11 19:26:23.360 INFO kablam!     Finished dev [unoptimized + debuginfo] target(s) in 2.12s
Oct 11 19:26:23.360 INFO kablam! su: No module specific data is present
Oct 11 19:26:24.206 INFO running `"docker" "rm" "-f" "6c37e59c831d33879d47f9f8146507d1e99ca431a85bad9bf6d327110cd30f2c"`
Oct 11 19:26:24.492 INFO blam! 6c37e59c831d33879d47f9f8146507d1e99ca431a85bad9bf6d327110cd30f2c
Oct 11 19:26:24.496 INFO running: cargo +0e07c4281c343e9e15a0a8fca79538ad1a8eb513-alt test --frozen
Oct 11 19:26:24.496 INFO running `"docker" "create" "-v" "/mnt/big/crater/./work/local/test-source/worker-3/rustdoc-test-static-cling/master#0e07c4281c343e9e15a0a8fca79538ad1a8eb513:/source:ro,Z" "-v" "/mnt/big/crater/./work/local/target-dirs/rustdoc-test-static-cling/worker-3/master#0e07c4281c343e9e15a0a8fca79538ad1a8eb513:/target:rw,Z" "-v" "/mnt/big/crater/./work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/./work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "CMD=cargo +0e07c4281c343e9e15a0a8fca79538ad1a8eb513-alt test --frozen" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-m" "1536M" "--network" "none" "crater"`
Oct 11 19:26:24.982 INFO blam! 88c62dc5fac87f9987a8be68a6c66174d6e3273af156eac147165279585cade1
Oct 11 19:26:24.983 INFO running `"docker" "start" "-a" "88c62dc5fac87f9987a8be68a6c66174d6e3273af156eac147165279585cade1"`
Oct 11 19:26:26.300 INFO kablam! usermod: no changes
Oct 11 19:26:26.346 INFO kablam!     Finished dev [unoptimized + debuginfo] target(s) in 0.01s
Oct 11 19:26:26.348 INFO kablam!      Running /target/debug/deps/heme-16d9455d8acde155
Oct 11 19:26:26.356 INFO blam! 
Oct 11 19:26:26.356 INFO blam! running 4 tests
Oct 11 19:26:26.360 INFO blam! test io::tests::test_entropy_function ... ok
Oct 11 19:26:26.360 INFO kablam!      Running /target/debug/deps/heme-02128be64117d3be
Oct 11 19:26:26.360 INFO blam! test io::tests::test_lennard_jones_atom_loading ... ok
Oct 11 19:26:26.360 INFO blam! test io::tests::test_new_atoms_testy ... ok
Oct 11 19:26:26.360 INFO blam! test io::tests::test_pdb_parsing ... ok
Oct 11 19:26:26.360 INFO blam! 
Oct 11 19:26:26.360 INFO blam! test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
Oct 11 19:26:26.360 INFO blam! 
Oct 11 19:26:26.368 INFO blam! 
Oct 11 19:26:26.368 INFO kablam!    Doc-tests heme
Oct 11 19:26:26.368 INFO blam! running 0 tests
Oct 11 19:26:26.368 INFO blam! 
Oct 11 19:26:26.368 INFO blam! test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
Oct 11 19:26:26.368 INFO blam! 
Oct 11 19:26:27.849 INFO blam! 
Oct 11 19:26:27.849 INFO blam! running 1 test
Oct 11 19:26:29.340 INFO blam! test src/conformation.rs - conformation::XYZ (line 18) ... ok
Oct 11 19:26:29.340 INFO blam! 
Oct 11 19:26:29.340 INFO blam! test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
Oct 11 19:26:29.340 INFO blam! 
Oct 11 19:26:29.348 INFO kablam! su: No module specific data is present
Oct 11 19:26:29.766 INFO running `"docker" "rm" "-f" "88c62dc5fac87f9987a8be68a6c66174d6e3273af156eac147165279585cade1"`
Oct 11 19:26:29.856 INFO blam! 88c62dc5fac87f9987a8be68a6c66174d6e3273af156eac147165279585cade1