Oct 16 06:37:29.123 INFO testing heme-0.3.1 against try#40d4795669493f1965de7c44029c69552134fe1f for rustdoc-test-static-cling-1
Oct 16 06:37:29.124 INFO running `"docker" "create" "-v" "/mnt/big/crater/./work/local/target-dirs/rustdoc-test-static-cling-1/worker-5/try#40d4795669493f1965de7c44029c69552134fe1f:/target:rw,Z" "-v" "/mnt/big/crater/./work/local/test-source/worker-5/rustdoc-test-static-cling-1/try#40d4795669493f1965de7c44029c69552134fe1f:/source:ro,Z" "-v" "/mnt/big/crater/./work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/./work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +40d4795669493f1965de7c44029c69552134fe1f-alt build --frozen" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"`
Oct 16 06:37:29.516 INFO blam! ced6e2524e93e15f08e45c6443941e9f65babdb258b723c19781fa9dfd3756ca
Oct 16 06:37:29.518 INFO running `"docker" "start" "-a" "ced6e2524e93e15f08e45c6443941e9f65babdb258b723c19781fa9dfd3756ca"`
Oct 16 06:37:30.955 INFO kablam! usermod: no changes
Oct 16 06:37:31.007 INFO kablam!    Compiling heme v0.3.1 (/source)
Oct 16 06:37:31.499 INFO kablam! warning: unused import: `std::collections::HashMap`
Oct 16 06:37:31.499 INFO kablam!  --> src/sampling.rs:1:5
Oct 16 06:37:31.500 INFO kablam!   |
Oct 16 06:37:31.500 INFO kablam! 1 | use std::collections::HashMap; 
Oct 16 06:37:31.500 INFO kablam!   |     ^^^^^^^^^^^^^^^^^^^^^^^^^
Oct 16 06:37:31.500 INFO kablam!   |
Oct 16 06:37:31.501 INFO kablam!   = note: #[warn(unused_imports)] on by default
Oct 16 06:37:31.501 INFO kablam! 
Oct 16 06:37:31.563 INFO kablam! warning: unused variable: `protocol_name`
Oct 16 06:37:31.563 INFO kablam!   --> src/sampling.rs:20:21
Oct 16 06:37:31.564 INFO kablam!    |
Oct 16 06:37:31.564 INFO kablam! 20 | pub fn get_protocol(protocol_name: &str) -> Protocol {
Oct 16 06:37:31.564 INFO kablam!    |                     ^^^^^^^^^^^^^ help: consider using `_protocol_name` instead
Oct 16 06:37:31.565 INFO kablam!    |
Oct 16 06:37:31.565 INFO kablam!    = note: #[warn(unused_variables)] on by default
Oct 16 06:37:31.565 INFO kablam! 
Oct 16 06:37:31.566 INFO kablam! warning: unused variable: `a1`
Oct 16 06:37:31.566 INFO kablam!   --> src/scoring.rs:24:39
Oct 16 06:37:31.566 INFO kablam!    |
Oct 16 06:37:31.567 INFO kablam! 24 | pub fn calculate_lennard_jones_energy(a1: &Atom, a2: &Atom, r: f64) -> f64 {
Oct 16 06:37:31.567 INFO kablam!    |                                       ^^ help: consider using `_a1` instead
Oct 16 06:37:31.567 INFO kablam! 
Oct 16 06:37:31.568 INFO kablam! warning: unused variable: `a2`
Oct 16 06:37:31.568 INFO kablam!   --> src/scoring.rs:24:50
Oct 16 06:37:31.568 INFO kablam!    |
Oct 16 06:37:31.569 INFO kablam! 24 | pub fn calculate_lennard_jones_energy(a1: &Atom, a2: &Atom, r: f64) -> f64 {
Oct 16 06:37:31.569 INFO kablam!    |                                                  ^^ help: consider using `_a2` instead
Oct 16 06:37:31.569 INFO kablam! 
Oct 16 06:37:31.583 INFO kablam! warning: field is never used: `atoms`
Oct 16 06:37:31.583 INFO kablam!   --> src/conformation.rs:52:5
Oct 16 06:37:31.584 INFO kablam!    |
Oct 16 06:37:31.584 INFO kablam! 52 |     atoms: Vec<Atom>,
Oct 16 06:37:31.584 INFO kablam!    |     ^^^^^^^^^^^^^^^^
Oct 16 06:37:31.584 INFO kablam!    |
Oct 16 06:37:31.585 INFO kablam!    = note: #[warn(dead_code)] on by default
Oct 16 06:37:31.585 INFO kablam! 
Oct 16 06:37:31.585 INFO kablam! warning: field is never used: `residue_name`
Oct 16 06:37:31.586 INFO kablam!   --> src/conformation.rs:53:5
Oct 16 06:37:31.586 INFO kablam!    |
Oct 16 06:37:31.586 INFO kablam! 53 |     residue_name: String,
Oct 16 06:37:31.587 INFO kablam!    |     ^^^^^^^^^^^^^^^^^^^^
Oct 16 06:37:31.587 INFO kablam! 
Oct 16 06:37:31.587 INFO kablam! warning: field is never used: `residue_index`
Oct 16 06:37:31.588 INFO kablam!   --> src/conformation.rs:54:5
Oct 16 06:37:31.588 INFO kablam!    |
Oct 16 06:37:31.588 INFO kablam! 54 |     residue_index: i32,
Oct 16 06:37:31.589 INFO kablam!    |     ^^^^^^^^^^^^^^^^^^
Oct 16 06:37:31.589 INFO kablam! 
Oct 16 06:37:33.135 INFO kablam!     Finished dev [unoptimized + debuginfo] target(s) in 2.14s
Oct 16 06:37:33.137 INFO kablam! su: No module specific data is present
Oct 16 06:37:33.676 INFO running `"docker" "rm" "-f" "ced6e2524e93e15f08e45c6443941e9f65babdb258b723c19781fa9dfd3756ca"`
Oct 16 06:37:33.741 INFO blam! ced6e2524e93e15f08e45c6443941e9f65babdb258b723c19781fa9dfd3756ca
Oct 16 06:37:33.743 INFO running `"docker" "create" "-v" "/mnt/big/crater/./work/local/target-dirs/rustdoc-test-static-cling-1/worker-5/try#40d4795669493f1965de7c44029c69552134fe1f:/target:rw,Z" "-v" "/mnt/big/crater/./work/local/test-source/worker-5/rustdoc-test-static-cling-1/try#40d4795669493f1965de7c44029c69552134fe1f:/source:ro,Z" "-v" "/mnt/big/crater/./work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/./work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +40d4795669493f1965de7c44029c69552134fe1f-alt test --frozen --no-run" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"`
Oct 16 06:37:33.920 INFO blam! 4b421ccbd4acf215d8163ad73018818a2c29108d489f7943c8d8ca9aff8c5ed0
Oct 16 06:37:33.920 INFO running `"docker" "start" "-a" "4b421ccbd4acf215d8163ad73018818a2c29108d489f7943c8d8ca9aff8c5ed0"`
Oct 16 06:37:34.244 INFO kablam! usermod: no changes
Oct 16 06:37:34.270 INFO kablam!    Compiling heme v0.3.1 (/source)
Oct 16 06:37:34.864 INFO kablam! warning: unused import: `std::collections::HashMap`
Oct 16 06:37:34.864 INFO kablam!  --> src/sampling.rs:1:5
Oct 16 06:37:34.864 INFO kablam!   |
Oct 16 06:37:34.864 INFO kablam! 1 | use std::collections::HashMap; 
Oct 16 06:37:34.864 INFO kablam!   |     ^^^^^^^^^^^^^^^^^^^^^^^^^
Oct 16 06:37:34.864 INFO kablam!   |
Oct 16 06:37:34.864 INFO kablam!   = note: #[warn(unused_imports)] on by default
Oct 16 06:37:34.864 INFO kablam! 
Oct 16 06:37:34.945 INFO kablam! warning: unused variable: `protocol_name`
Oct 16 06:37:34.945 INFO kablam!   --> src/sampling.rs:20:21
Oct 16 06:37:34.945 INFO kablam!    |
Oct 16 06:37:34.945 INFO kablam! 20 | pub fn get_protocol(protocol_name: &str) -> Protocol {
Oct 16 06:37:34.946 INFO kablam!    |                     ^^^^^^^^^^^^^ help: consider using `_protocol_name` instead
Oct 16 06:37:34.946 INFO kablam!    |
Oct 16 06:37:34.947 INFO kablam!    = note: #[warn(unused_variables)] on by default
Oct 16 06:37:34.947 INFO kablam! 
Oct 16 06:37:34.948 INFO kablam! warning: unused variable: `a1`
Oct 16 06:37:34.948 INFO kablam!   --> src/scoring.rs:24:39
Oct 16 06:37:34.949 INFO kablam!    |
Oct 16 06:37:34.949 INFO kablam! 24 | pub fn calculate_lennard_jones_energy(a1: &Atom, a2: &Atom, r: f64) -> f64 {
Oct 16 06:37:34.949 INFO kablam!    |                                       ^^ help: consider using `_a1` instead
Oct 16 06:37:34.950 INFO kablam! 
Oct 16 06:37:34.950 INFO kablam! warning: unused variable: `a2`
Oct 16 06:37:34.951 INFO kablam!   --> src/scoring.rs:24:50
Oct 16 06:37:34.952 INFO kablam!    |
Oct 16 06:37:34.952 INFO kablam! 24 | pub fn calculate_lennard_jones_energy(a1: &Atom, a2: &Atom, r: f64) -> f64 {
Oct 16 06:37:34.953 INFO kablam!    |                                                  ^^ help: consider using `_a2` instead
Oct 16 06:37:34.955 INFO kablam! 
Oct 16 06:37:34.973 INFO kablam! warning: field is never used: `atoms`
Oct 16 06:37:34.974 INFO kablam!   --> src/conformation.rs:52:5
Oct 16 06:37:34.974 INFO kablam!    |
Oct 16 06:37:34.975 INFO kablam! 52 |     atoms: Vec<Atom>,
Oct 16 06:37:34.975 INFO kablam!    |     ^^^^^^^^^^^^^^^^
Oct 16 06:37:34.976 INFO kablam!    |
Oct 16 06:37:34.976 INFO kablam!    = note: #[warn(dead_code)] on by default
Oct 16 06:37:34.976 INFO kablam! 
Oct 16 06:37:34.977 INFO kablam! warning: field is never used: `residue_name`
Oct 16 06:37:34.977 INFO kablam!   --> src/conformation.rs:53:5
Oct 16 06:37:34.977 INFO kablam!    |
Oct 16 06:37:34.978 INFO kablam! 53 |     residue_name: String,
Oct 16 06:37:34.978 INFO kablam!    |     ^^^^^^^^^^^^^^^^^^^^
Oct 16 06:37:34.978 INFO kablam! 
Oct 16 06:37:34.983 INFO kablam! warning: field is never used: `residue_index`
Oct 16 06:37:34.983 INFO kablam!   --> src/conformation.rs:54:5
Oct 16 06:37:34.983 INFO kablam!    |
Oct 16 06:37:34.984 INFO kablam! 54 |     residue_index: i32,
Oct 16 06:37:34.984 INFO kablam!    |     ^^^^^^^^^^^^^^^^^^
Oct 16 06:37:34.984 INFO kablam! 
Oct 16 06:37:34.993 INFO kablam! warning: function `H` should have a snake case name such as `h`
Oct 16 06:37:34.993 INFO kablam!    --> src/io.rs:152:9
Oct 16 06:37:34.994 INFO kablam!     |
Oct 16 06:37:34.994 INFO kablam! 152 | /         fn H(l: &f64) -> f64 {
Oct 16 06:37:34.995 INFO kablam! 153 | |
Oct 16 06:37:34.995 INFO kablam! 154 | |             // bounds of N choose lN
Oct 16 06:37:34.995 INFO kablam! 155 | |             // can be found by 2^(n*H(l))
Oct 16 06:37:34.995 INFO kablam! ...   |
Oct 16 06:37:34.996 INFO kablam! 161 | |             l.ln() - value * value.ln()
Oct 16 06:37:34.996 INFO kablam! 162 | |         }
Oct 16 06:37:34.996 INFO kablam!     | |_________^
Oct 16 06:37:34.999 INFO kablam!     |
Oct 16 06:37:34.999 INFO kablam!     = note: #[warn(non_snake_case)] on by default
Oct 16 06:37:34.999 INFO kablam! 
Oct 16 06:37:35.848 INFO kablam!     Finished dev [unoptimized + debuginfo] target(s) in 1.58s
Oct 16 06:37:35.851 INFO kablam! su: No module specific data is present
Oct 16 06:37:37.002 INFO running `"docker" "rm" "-f" "4b421ccbd4acf215d8163ad73018818a2c29108d489f7943c8d8ca9aff8c5ed0"`
Oct 16 06:37:37.378 INFO blam! 4b421ccbd4acf215d8163ad73018818a2c29108d489f7943c8d8ca9aff8c5ed0
Oct 16 06:37:37.387 INFO running `"docker" "create" "-v" "/mnt/big/crater/./work/local/target-dirs/rustdoc-test-static-cling-1/worker-5/try#40d4795669493f1965de7c44029c69552134fe1f:/target:rw,Z" "-v" "/mnt/big/crater/./work/local/test-source/worker-5/rustdoc-test-static-cling-1/try#40d4795669493f1965de7c44029c69552134fe1f:/source:ro,Z" "-v" "/mnt/big/crater/./work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/./work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +40d4795669493f1965de7c44029c69552134fe1f-alt test --frozen" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"`
Oct 16 06:37:37.879 INFO blam! 00da025c3c331dbb4116f5137678eac9dcbf7ccd6d64969b71c4de8fbf8ba81d
Oct 16 06:37:37.881 INFO running `"docker" "start" "-a" "00da025c3c331dbb4116f5137678eac9dcbf7ccd6d64969b71c4de8fbf8ba81d"`
Oct 16 06:37:38.934 INFO kablam! usermod: no changes
Oct 16 06:37:38.955 INFO kablam!     Finished dev [unoptimized + debuginfo] target(s) in 0.00s
Oct 16 06:37:38.956 INFO kablam!      Running /target/debug/deps/heme-4cb14222e7f8394e
Oct 16 06:37:38.958 INFO blam! 
Oct 16 06:37:38.958 INFO blam! running 4 tests
Oct 16 06:37:38.958 INFO blam! test io::tests::test_new_atoms_testy ... ok
Oct 16 06:37:38.958 INFO blam! test io::tests::test_entropy_function ... ok
Oct 16 06:37:38.958 INFO blam! test io::tests::test_pdb_parsing ... ok
Oct 16 06:37:38.959 INFO blam! test io::tests::test_lennard_jones_atom_loading ... ok
Oct 16 06:37:38.959 INFO blam! 
Oct 16 06:37:38.959 INFO blam! test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
Oct 16 06:37:38.959 INFO blam! 
Oct 16 06:37:38.959 INFO kablam!      Running /target/debug/deps/heme-57b60ba7680a6cf1
Oct 16 06:37:38.961 INFO blam! 
Oct 16 06:37:38.961 INFO blam! running 0 tests
Oct 16 06:37:38.961 INFO blam! 
Oct 16 06:37:38.961 INFO blam! test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
Oct 16 06:37:38.961 INFO blam! 
Oct 16 06:37:38.962 INFO kablam!    Doc-tests heme
Oct 16 06:37:39.782 INFO blam! 
Oct 16 06:37:39.782 INFO blam! running 1 test
Oct 16 06:37:40.792 INFO blam! test src/conformation.rs - conformation::XYZ (line 18) ... ok
Oct 16 06:37:40.792 INFO blam! 
Oct 16 06:37:40.792 INFO blam! test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
Oct 16 06:37:40.792 INFO blam! 
Oct 16 06:37:40.798 INFO kablam! su: No module specific data is present
Oct 16 06:37:41.146 INFO running `"docker" "rm" "-f" "00da025c3c331dbb4116f5137678eac9dcbf7ccd6d64969b71c4de8fbf8ba81d"`
Oct 16 06:37:41.271 INFO blam! 00da025c3c331dbb4116f5137678eac9dcbf7ccd6d64969b71c4de8fbf8ba81d