Oct 16 16:57:12.696 INFO testing bio-0.22.0 against try#40d4795669493f1965de7c44029c69552134fe1f for rustdoc-test-static-cling-1
Oct 16 16:57:12.698 INFO running `"docker" "create" "-v" "/mnt/big/crater/./work/local/target-dirs/rustdoc-test-static-cling-1/worker-2/try#40d4795669493f1965de7c44029c69552134fe1f:/target:rw,Z" "-v" "/mnt/big/crater/./work/local/test-source/worker-2/rustdoc-test-static-cling-1/try#40d4795669493f1965de7c44029c69552134fe1f:/source:ro,Z" "-v" "/mnt/big/crater/./work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/./work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +40d4795669493f1965de7c44029c69552134fe1f-alt build --frozen" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"`
Oct 16 16:57:13.111 INFO blam! 2af2aec44ffc97aff87f38e34b6e50259c8df0b3639c3b520966a79049c349b7
Oct 16 16:57:13.113 INFO running `"docker" "start" "-a" "2af2aec44ffc97aff87f38e34b6e50259c8df0b3639c3b520966a79049c349b7"`
Oct 16 16:57:14.203 INFO kablam! usermod: no changes
Oct 16 16:57:14.487 INFO kablam!    Compiling statrs v0.9.0
Oct 16 16:57:14.487 INFO kablam!    Compiling bio-types v0.4.0
Oct 16 16:57:20.765 INFO kablam!    Compiling bio v0.22.0 (/source)
Oct 16 16:57:25.544 INFO kablam! warning: unused `#[macro_use]` import
Oct 16 16:57:25.544 INFO kablam!    --> src/lib.rs:103:1
Oct 16 16:57:25.544 INFO kablam!     |
Oct 16 16:57:25.544 INFO kablam! 103 | #[macro_use]
Oct 16 16:57:25.544 INFO kablam!     | ^^^^^^^^^^^^
Oct 16 16:57:25.544 INFO kablam!     |
Oct 16 16:57:25.544 INFO kablam!     = note: #[warn(unused_imports)] on by default
Oct 16 16:57:25.544 INFO kablam! 
Oct 16 16:57:25.544 INFO kablam! warning: unused `#[macro_use]` import
Oct 16 16:57:25.544 INFO kablam!    --> src/lib.rs:117:1
Oct 16 16:57:25.544 INFO kablam!     |
Oct 16 16:57:25.544 INFO kablam! 117 | #[macro_use]
Oct 16 16:57:25.544 INFO kablam!     | ^^^^^^^^^^^^
Oct 16 16:57:25.544 INFO kablam! 
Oct 16 16:57:33.640 INFO kablam!     Finished dev [unoptimized + debuginfo] target(s) in 19.40s
Oct 16 16:57:33.655 INFO kablam! su: No module specific data is present
Oct 16 16:57:34.199 INFO running `"docker" "rm" "-f" "2af2aec44ffc97aff87f38e34b6e50259c8df0b3639c3b520966a79049c349b7"`
Oct 16 16:57:34.408 INFO blam! 2af2aec44ffc97aff87f38e34b6e50259c8df0b3639c3b520966a79049c349b7
Oct 16 16:57:34.416 INFO running `"docker" "create" "-v" "/mnt/big/crater/./work/local/target-dirs/rustdoc-test-static-cling-1/worker-2/try#40d4795669493f1965de7c44029c69552134fe1f:/target:rw,Z" "-v" "/mnt/big/crater/./work/local/test-source/worker-2/rustdoc-test-static-cling-1/try#40d4795669493f1965de7c44029c69552134fe1f:/source:ro,Z" "-v" "/mnt/big/crater/./work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/./work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +40d4795669493f1965de7c44029c69552134fe1f-alt test --frozen --no-run" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"`
Oct 16 16:57:34.784 INFO blam! 039a69910908c6262dc179c1da8566b4b0d3917de58ed6facbe2c87c9a8a0897
Oct 16 16:57:34.791 INFO running `"docker" "start" "-a" "039a69910908c6262dc179c1da8566b4b0d3917de58ed6facbe2c87c9a8a0897"`
Oct 16 16:57:35.694 INFO kablam! usermod: no changes
Oct 16 16:57:35.811 INFO kablam!    Compiling bio v0.22.0 (/source)
Oct 16 16:58:01.001 INFO kablam!     Finished dev [unoptimized + debuginfo] target(s) in 25.27s
Oct 16 16:58:01.014 INFO kablam! su: No module specific data is present
Oct 16 16:58:01.451 INFO running `"docker" "rm" "-f" "039a69910908c6262dc179c1da8566b4b0d3917de58ed6facbe2c87c9a8a0897"`
Oct 16 16:58:01.664 INFO blam! 039a69910908c6262dc179c1da8566b4b0d3917de58ed6facbe2c87c9a8a0897
Oct 16 16:58:01.673 INFO running `"docker" "create" "-v" "/mnt/big/crater/./work/local/target-dirs/rustdoc-test-static-cling-1/worker-2/try#40d4795669493f1965de7c44029c69552134fe1f:/target:rw,Z" "-v" "/mnt/big/crater/./work/local/test-source/worker-2/rustdoc-test-static-cling-1/try#40d4795669493f1965de7c44029c69552134fe1f:/source:ro,Z" "-v" "/mnt/big/crater/./work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/./work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +40d4795669493f1965de7c44029c69552134fe1f-alt test --frozen" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"`
Oct 16 16:58:01.981 INFO blam! 052611ad2c8474d256aba8cb5da16fc76649c168b2dac74361e55a26567d37fb
Oct 16 16:58:01.987 INFO running `"docker" "start" "-a" "052611ad2c8474d256aba8cb5da16fc76649c168b2dac74361e55a26567d37fb"`
Oct 16 16:58:02.832 INFO kablam! usermod: no changes
Oct 16 16:58:03.029 INFO kablam!     Finished dev [unoptimized + debuginfo] target(s) in 0.14s
Oct 16 16:58:03.029 INFO kablam!      Running /target/debug/deps/bio-5ec909d5e8b17c9f
Oct 16 16:58:03.043 INFO blam! 
Oct 16 16:58:03.044 INFO blam! running 227 tests
Oct 16 16:58:03.045 INFO blam! test alignment::pairwise::banded::banded::test_band_add_kmer ... ok
Oct 16 16:58:03.045 INFO blam! test alignment::distance::tests::test_levenshtein_dist ... ok
Oct 16 16:58:03.045 INFO blam! test alignment::distance::tests::test_hamming_dist_good ... ok
Oct 16 16:58:03.056 INFO blam! test alignment::pairwise::banded::banded::test_band_add_entry ... ok
Oct 16 16:58:03.071 INFO blam! test alignment::pairwise::banded::banded::test_blosum62 ... ok
Oct 16 16:58:03.071 INFO blam! test alignment::pairwise::banded::banded::test_aligner_new ... ok
Oct 16 16:58:03.100 INFO blam! test alignment::pairwise::banded::banded::test_global_affine_ins ... ok
Oct 16 16:58:03.119 INFO blam! test alignment::pairwise::banded::banded::test_global ... ok
Oct 16 16:58:03.119 INFO blam! test alignment::pairwise::banded::banded::test_global_affine_ins2 ... ok
Oct 16 16:58:03.120 INFO blam! test alignment::pairwise::banded::banded::test_global_right_del ... ok
Oct 16 16:58:03.145 INFO blam! test alignment::pairwise::banded::banded::test_insert_in_between_semiglobal ... ok
Oct 16 16:58:03.145 INFO blam! test alignment::pairwise::banded::banded::test_insert_only_semiglobal ... ok
Oct 16 16:58:03.145 INFO blam! test alignment::pairwise::banded::banded::test_band_ends_inside ... ok
Oct 16 16:58:03.163 INFO blam! test alignment::pairwise::banded::banded::test_issue12_1 ... ok
Oct 16 16:58:03.163 INFO blam! test alignment::pairwise::banded::banded::test_issue11 ... ok
Oct 16 16:58:03.167 INFO blam! test alignment::pairwise::banded::banded::test_issue12_2 ... ok
Oct 16 16:58:03.173 INFO blam! test alignment::pairwise::banded::banded::test_issue12_3 ... ok
Oct 16 16:58:03.173 INFO blam! test alignment::pairwise::banded::banded::test_left_aligned_del ... ok
Oct 16 16:58:03.173 INFO blam! test alignment::pairwise::banded::banded::test_deletion ... ok
Oct 16 16:58:03.173 INFO blam! test alignment::pairwise::banded::banded::test_local ... ok
Oct 16 16:58:03.173 INFO blam! test alignment::pairwise::banded::banded::test_left_aligned_ins ... ok
Oct 16 16:58:03.175 INFO blam! test alignment::pairwise::banded::banded::test_local_affine_ins2 ... ok
Oct 16 16:58:03.175 INFO blam! test alignment::pairwise::banded::banded::test_local_empty ... ok
Oct 16 16:58:03.195 INFO blam! test alignment::pairwise::banded::banded::test_longer_string_all_operations ... ok
Oct 16 16:58:03.195 INFO blam! test alignment::pairwise::banded::banded::test_band_starts_inside ... ok
Oct 16 16:58:03.235 INFO blam! test alignment::pairwise::banded::banded::test_band_is_fully_inside ... ok
Oct 16 16:58:03.243 INFO blam! test alignment::pairwise::banded::banded::test_insertion ... ok
Oct 16 16:58:03.251 INFO blam! test alignment::pairwise::banded::banded::test_overhangs3 ... ok
Oct 16 16:58:03.251 INFO blam! test alignment::distance::tests::test_hamming_dist_bad ... ok
Oct 16 16:58:03.254 INFO blam! test alignment::pairwise::banded::banded::test_semiglobal_gap_open_lt_mismatch ... ok
Oct 16 16:58:03.254 INFO blam! test alignment::pairwise::banded::banded::test_semiglobal ... ok
Oct 16 16:58:03.254 INFO blam! test alignment::pairwise::banded::banded::test_overhangs1 ... ok
Oct 16 16:58:03.254 INFO blam! test alignment::pairwise::banded::banded::test_semiglobal_simple ... ok
Oct 16 16:58:03.254 INFO blam! test alignment::pairwise::banded::banded::test_xclip_suffix_custom ... ok
Oct 16 16:58:03.254 INFO blam! test alignment::pairwise::banded::banded::test_yclip_prefix_custom ... ok
Oct 16 16:58:03.254 INFO blam! test alignment::pairwise::banded::banded::test_yclip_suffix_custom ... ok
Oct 16 16:58:03.254 INFO blam! test alignment::pairwise::tests::test_aligner_new ... ok
Oct 16 16:58:03.254 INFO blam! test alignment::pairwise::tests::test_blosum62 ... ok
Oct 16 16:58:03.259 INFO blam! test alignment::pairwise::banded::banded::test_overhangs2 ... ok
Oct 16 16:58:03.259 INFO blam! test alignment::pairwise::tests::test_global ... ok
Oct 16 16:58:03.259 INFO blam! test alignment::pairwise::banded::banded::test_overhangs4 ... ok
Oct 16 16:58:03.260 INFO blam! test alignment::pairwise::tests::test_global_affine_ins2 ... ok
Oct 16 16:58:03.260 INFO blam! test alignment::pairwise::tests::test_global_affine_ins ... ok
Oct 16 16:58:03.260 INFO blam! test alignment::pairwise::tests::test_insert_only_semiglobal ... ok
Oct 16 16:58:03.271 INFO blam! test alignment::pairwise::tests::test_issue11 ... ok
Oct 16 16:58:03.271 INFO blam! test alignment::pairwise::tests::test_insert_in_between_semiglobal ... ok
Oct 16 16:58:03.271 INFO blam! test alignment::pairwise::tests::test_issue12_1 ... ok
Oct 16 16:58:03.275 INFO blam! test alignment::pairwise::banded::banded::test_xclip_prefix_custom ... ok
Oct 16 16:58:03.275 INFO blam! test alignment::pairwise::tests::test_issue12_2 ... ok
Oct 16 16:58:03.275 INFO blam! test alignment::pairwise::tests::test_global_right_del ... ok
Oct 16 16:58:03.283 INFO blam! test alignment::pairwise::tests::test_left_aligned_del ... ok
Oct 16 16:58:03.283 INFO blam! test alignment::pairwise::tests::test_left_aligned_ins ... ok
Oct 16 16:58:03.290 INFO blam! test alignment::pairwise::tests::test_local_affine_ins2 ... ok
Oct 16 16:58:03.291 INFO blam! test alignment::pairwise::tests::test_longer_string_all_operations ... ok
Oct 16 16:58:03.291 INFO blam! test alignment::pairwise::tests::test_local ... ok
Oct 16 16:58:03.291 INFO blam! test alignment::pairwise::tests::test_semiglobal_gap_open_lt_mismatch ... ok
Oct 16 16:58:03.291 INFO blam! test alignment::pairwise::tests::test_scoring_from_scores ... ok
Oct 16 16:58:03.291 INFO blam! test alignment::pairwise::banded::banded::test_substitutions ... ok
Oct 16 16:58:03.291 INFO blam! test alignment::pairwise::tests::test_semiglobal_simple ... ok
Oct 16 16:58:03.293 INFO blam! test alignment::pairwise::tests::test_xclip_suffix_custom ... ok
Oct 16 16:58:03.293 INFO blam! test alignment::pairwise::tests::test_xclip_prefix_custom ... ok
Oct 16 16:58:03.293 INFO blam! test alignment::pairwise::tests::traceback_cell ... ok
Oct 16 16:58:03.293 INFO blam! test alignment::sparse::sparse_alignment::test_expanded_matches ... ok
Oct 16 16:58:03.293 INFO blam! test alignment::pairwise::banded::banded::test_same ... ok
Oct 16 16:58:03.295 INFO blam! test alignment::sparse::sparse_alignment::test_find_kmer_matches ... ok
Oct 16 16:58:03.295 INFO blam! test alignment::pairwise::tests::test_issue12_3 ... ok
Oct 16 16:58:03.297 INFO blam! test alignment::pairwise::tests::test_yclip_prefix_custom ... ok
Oct 16 16:58:03.297 INFO blam! test alignment::pairwise::tests::test_yclip_suffix_custom ... ok
Oct 16 16:58:03.297 INFO blam! test alignment::sparse::sparse_alignment::test_lcskpp2 ... ok
Oct 16 16:58:03.297 INFO blam! test alignment::pairwise::tests::test_semiglobal ... ok
Oct 16 16:58:03.297 INFO blam! test alignment::sparse::sparse_alignment::test_lcskpp1 ... ok
Oct 16 16:58:03.297 INFO blam! test alignment::sparse::sparse_alignment::test_lcskpp_same ... ok
Oct 16 16:58:03.297 INFO blam! test alignment::sparse::sparse_alignment::test_lcskpp0 ... ok
Oct 16 16:58:03.299 INFO blam! test alignment::sparse::sparse_alignment::test_sdpkpp_same ... ok
Oct 16 16:58:03.307 INFO blam! test alignment::sparse::sparse_alignment::test_sdp1 ... ok
Oct 16 16:58:03.307 INFO blam! test alignment::sparse::sparse_alignment::test_sdp ... ok
Oct 16 16:58:03.307 INFO blam! test alphabets::protein::tests::is_no_word ... ok
Oct 16 16:58:03.307 INFO blam! test alignment::sparse::sparse_alignment::test_sdp2 ... ok
Oct 16 16:58:03.307 INFO blam! test alphabets::protein::tests::is_word ... ok
Oct 16 16:58:03.307 INFO blam! test alphabets::protein::tests::number_is_no_word ... ok
Oct 16 16:58:03.307 INFO blam! test alphabets::protein::tests::symbol_is_no_word ... ok
Oct 16 16:58:03.307 INFO blam! test alphabets::rna::tests::number_is_no_word ... ok
Oct 16 16:58:03.308 INFO blam! test alphabets::rna::tests::is_word ... ok
Oct 16 16:58:03.308 INFO blam! test alphabets::rna::tests::symbol_is_no_word ... ok
Oct 16 16:58:03.308 INFO blam! test alphabets::rna::tests::test_reverse_complement ... ok
Oct 16 16:58:03.308 INFO blam! test data_structures::bit_tree::test_bit_tree::test_bit_tree ... ok
Oct 16 16:58:03.308 INFO blam! test data_structures::bitenc::tests::test_bitenc ... ok
Oct 16 16:58:03.308 INFO blam! test data_structures::bitenc::tests::test_push_values ... ok
Oct 16 16:58:03.308 INFO blam! test alignment::sparse::sparse_alignment::test_lcskpp_tandem_repeat ... ok
Oct 16 16:58:03.308 INFO blam! test data_structures::bwt::tests::test_bwtfind ... ok
Oct 16 16:58:03.319 INFO blam! test data_structures::bitenc::tests::test_issue29 ... ok
Oct 16 16:58:03.319 INFO blam! test data_structures::bwt::tests::test_occ ... ok
Oct 16 16:58:03.319 INFO blam! test data_structures::fmindex::tests::test_init_interval ... ok
Oct 16 16:58:03.319 INFO blam! test data_structures::fmindex::tests::test_fmindex ... ok
Oct 16 16:58:03.319 INFO blam! test data_structures::bwt::tests::test_invert_bwt ... ok
Oct 16 16:58:03.319 INFO blam! test data_structures::interval_tree::tests::from_iterator ... ok
Oct 16 16:58:03.319 INFO blam! test data_structures::fmindex::tests::test_smems ... ok
Oct 16 16:58:03.319 INFO blam! test data_structures::interval_tree::tests::iter_mut ... ok
Oct 16 16:58:03.319 INFO blam! test alphabets::rna::tests::is_no_word ... ok
Oct 16 16:58:03.319 INFO blam! test alignment::pairwise::banded::banded::test_overhangs5 ... ok
Oct 16 16:58:03.321 INFO blam! test data_structures::interval_tree::tests::zero_width_ranges ... ok
Oct 16 16:58:03.321 INFO blam! test data_structures::qgram_index::tests::test_exact_matches ... ok
Oct 16 16:58:03.321 INFO blam! test data_structures::qgram_index::tests::test_exact_matches_self ... ok
Oct 16 16:58:03.347 INFO blam! test data_structures::rank_select::tests::test_rank_select ... ok
Oct 16 16:58:03.347 INFO blam! test data_structures::qgram_index::tests::test_matches ... ok
Oct 16 16:58:03.347 INFO blam! test data_structures::interval_tree::tests::test_insertion_and_intersection ... ok
Oct 16 16:58:03.347 INFO blam! test data_structures::qgram_index::tests::test_qgram_matches ... ok
Oct 16 16:58:03.347 INFO blam! test alignment::sparse::sparse_alignment::test_sdpkpp_tandem_repeat ... ok
Oct 16 16:58:03.348 INFO blam! test data_structures::suffix_array::tests::test_buckets ... ok
Oct 16 16:58:03.348 INFO blam! test data_structures::suffix_array::tests::test_issue10_2 ... ok
Oct 16 16:58:03.348 INFO blam! test data_structures::suffix_array::tests::test_lms_pos ... ok
Oct 16 16:58:03.348 INFO blam! test data_structures::suffix_array::tests::test_pos ... ok
Oct 16 16:58:03.348 INFO blam! test data_structures::suffix_array::tests::test_pos_types ... ok
Oct 16 16:58:03.351 INFO blam! test data_structures::rank_select::tests::test_select ... ok
Oct 16 16:58:03.351 INFO blam! test data_structures::rank_select::tests::test_single_select ... ok
Oct 16 16:58:03.351 INFO blam! test data_structures::suffix_array::tests::test_issue10_1 ... ok
Oct 16 16:58:03.363 INFO blam! test io::fasta::tests::test_index_sequences ... ok
Oct 16 16:58:03.363 INFO blam! test io::bed::tests::test_writer ... ok
Oct 16 16:58:03.363 INFO blam! test io::bed::tests::test_reader ... ok
Oct 16 16:58:03.363 INFO blam! test data_structures::suffix_array::tests::test_sorts_lexically ... ok
Oct 16 16:58:03.363 INFO blam! test data_structures::suffix_array::tests::test_handles_sentinels_properly ... ok
Oct 16 16:58:03.363 INFO blam! test io::fasta::tests::test_indexed_reader_crlf ... ok
Oct 16 16:58:03.363 INFO blam! test io::fasta::tests::test_indexed_reader_crlf_all ... ok
Oct 16 16:58:03.367 INFO blam! test io::fasta::tests::test_indexed_reader_crlf_by_rid_all ... ok
Oct 16 16:58:03.368 INFO blam! test io::fasta::tests::test_indexed_reader_bad_reader ... ok
Oct 16 16:58:03.369 INFO blam! test io::fasta::tests::test_indexed_reader_by_rid_all ... ok
Oct 16 16:58:03.369 INFO blam! test io::fasta::tests::test_indexed_reader_all ... ok
Oct 16 16:58:03.375 INFO blam! test io::fasta::tests::test_indexed_reader_iter_all ... ok
Oct 16 16:58:03.390 INFO blam! test io::fasta::tests::test_indexed_reader_iter_by_rid_all ... ok
Oct 16 16:58:03.391 INFO blam! test io::fasta::tests::test_indexed_reader_iter ... ok
Oct 16 16:58:03.391 INFO blam! test io::fasta::tests::test_indexed_reader ... ok
Oct 16 16:58:03.391 INFO blam! test io::fasta::tests::test_indexed_reader_iter_crlf ... ok
Oct 16 16:58:03.391 INFO blam! test io::fasta::tests::test_indexed_reader_iter_crlf_all ... ok
Oct 16 16:58:03.391 INFO blam! test io::fasta::tests::test_indexed_reader_no_fetch_read_fails ... ok
Oct 16 16:58:03.391 INFO blam! test io::fasta::tests::test_indexed_reader_iter_size_hint ... ok
Oct 16 16:58:03.400 INFO blam! test io::fasta::tests::test_indexed_reader_iter_crlf_by_rid_all ... ok
Oct 16 16:58:03.403 INFO blam! test io::fasta::tests::test_indexed_reader_read_read_fails ... ok
Oct 16 16:58:03.403 INFO blam! test io::fasta::tests::test_indexed_reader_read_seek_fails ... ok
Oct 16 16:58:03.405 INFO blam! test io::fasta::tests::test_indexed_reader_iter_seek_fails ... ok
Oct 16 16:58:03.405 INFO blam! test io::fasta::tests::test_indexed_reader_no_fetch_read_iter_fails ... ok
Oct 16 16:58:03.405 INFO blam! test io::fasta::tests::test_indexed_reader_no_trailing_lf ... ok
Oct 16 16:58:03.415 INFO blam! test io::fasta::tests::test_reader_non_ascii_sequence ... ok
Oct 16 16:58:03.415 INFO blam! test io::fasta::tests::test_reader_read_fails ... ok
Oct 16 16:58:03.415 INFO blam! test io::fasta::tests::test_reader_read_fails_iter ... ok
Oct 16 16:58:03.423 INFO blam! test io::fasta::tests::test_reader_no_id ... ok
Oct 16 16:58:03.423 INFO blam! test io::fasta::tests::test_reader ... ok
Oct 16 16:58:03.435 INFO blam! test io::fasta::tests::test_indexed_reader_reused_buffer ... ok
Oct 16 16:58:03.435 INFO blam! test io::fasta::tests::test_record_with_attrs ... ok
Oct 16 16:58:03.435 INFO blam! test io::fastq::tests::test_reader ... ok
Oct 16 16:58:03.439 INFO blam! test io::fasta::tests::test_writer ... ok
Oct 16 16:58:03.439 INFO blam! test io::fastq::tests::test_record_with_attrs ... ok
Oct 16 16:58:03.444 INFO blam! test io::fasta::tests::test_reader_wrong_header ... ok
Oct 16 16:58:03.471 INFO blam! test io::fastq::tests::test_writer ... ok
Oct 16 16:58:03.471 INFO blam! test io::gff::tests::test_reader_gff3 ... ok
Oct 16 16:58:03.472 INFO blam! test io::fasta::tests::test_indexed_reader_iter_read_fails ... ok
Oct 16 16:58:03.479 INFO blam! test io::gff::tests::test_convert_gtf2_to_gff3 ... ok
Oct 16 16:58:03.487 INFO blam! test data_structures::fmindex::tests::test_issue39 ... ok
Oct 16 16:58:03.495 INFO blam! test pattern_matching::bndm::tests::test_find_all ... ok
Oct 16 16:58:03.499 INFO blam! test io::gff::tests::test_reader_gtf2 ... ok
Oct 16 16:58:03.499 INFO blam! test io::gff::tests::test_reader_gtf2_2 ... ok
Oct 16 16:58:03.507 INFO blam! test io::gff::tests::test_writer_gtf2 ... ok
Oct 16 16:58:03.507 INFO blam! test io::gff::tests::test_writer_gff3 ... ok
Oct 16 16:58:03.507 INFO blam! test pattern_matching::horspool::tests::test_shift ... ok
Oct 16 16:58:03.507 INFO blam! test pattern_matching::kmp::tests::test_delta ... ok
Oct 16 16:58:03.507 INFO blam! test pattern_matching::kmp::tests::test_find_all_at_start ... ok
Oct 16 16:58:03.507 INFO blam! test pattern_matching::kmp::tests::test_find_all ... ok
Oct 16 16:58:03.515 INFO blam! test pattern_matching::kmp::tests::test_lps ... ok
Oct 16 16:58:03.515 INFO blam! test pattern_matching::horspool::tests::test_find_all ... ok
Oct 16 16:58:03.515 INFO blam! test pattern_matching::bom::tests::test_find_all ... ok
Oct 16 16:58:03.519 INFO blam! test data_structures::interval_tree::tests::test_insertion_and_intersection_2 ... ok
Oct 16 16:58:03.519 INFO blam! test io::gff::tests::test_reader_gtf2_dup_attr_keys ... ok
Oct 16 16:58:03.519 INFO blam! test pattern_matching::bom::tests::test_delta ... ok
Oct 16 16:58:03.520 INFO blam! test pattern_matching::myers::tests::test_long ... ok
Oct 16 16:58:03.520 INFO blam! test pattern_matching::myers::tests::test_find_all_end ... ok
Oct 16 16:58:03.520 INFO blam! test pattern_matching::myers::tests::test_distance ... ok
Oct 16 16:58:03.520 INFO blam! test pattern_matching::pssm::dnamotif::tests::find_motif ... ok
Oct 16 16:58:03.520 INFO blam! test pattern_matching::pssm::protmotif::tests::test_inconsist_err ... ok
Oct 16 16:58:03.520 INFO blam! test pattern_matching::pssm::protmotif::tests::test_info_content ... ok
Oct 16 16:58:03.521 INFO blam! test pattern_matching::pssm::dnamotif::tests::test_mono_err ... ok
Oct 16 16:58:03.521 INFO blam! test pattern_matching::pssm::dnamotif::tests::test_info_content ... ok
Oct 16 16:58:03.521 INFO blam! test pattern_matching::ukkonen::tests::test_find_all_end ... ok
Oct 16 16:58:03.521 INFO blam! test pattern_matching::ukkonen::tests::test_find_start ... ok
Oct 16 16:58:03.521 INFO blam! test pattern_matching::pssm::protmotif::tests::test_scoring ... ok
Oct 16 16:58:03.522 INFO blam! test scores::blosum62::tests::test_blosum62 ... ok
Oct 16 16:58:03.522 INFO blam! test scores::pam120::tests::test_pam120 ... ok
Oct 16 16:58:03.522 INFO blam! test scores::pam200::tests::test_pam200 ... ok
Oct 16 16:58:03.522 INFO blam! test scores::pam250::tests::test_pam250 ... ok
Oct 16 16:58:03.522 INFO blam! test scores::pam40::tests::test_pam40 ... ok
Oct 16 16:58:03.522 INFO blam! test seq_analysis::orf::tests::test_orf ... ok
Oct 16 16:58:03.523 INFO blam! test stats::bayesian::tests::test_expected_fdr ... ok
Oct 16 16:58:03.523 INFO blam! test stats::combinatorics::tests::test_comb ... ok
Oct 16 16:58:03.523 INFO blam! test stats::combinatorics::tests::test_comb_scaled ... ok
Oct 16 16:58:03.523 INFO blam! test stats::hmm::tests::test_discrete_backward_toy_example ... ok
Oct 16 16:58:03.523 INFO blam! test stats::hmm::tests::test_discrete_forward_toy_example ... ok
Oct 16 16:58:03.523 INFO blam! test stats::hmm::tests::test_gaussian_backward_simple_example ... ok
Oct 16 16:58:03.524 INFO blam! test stats::hmm::tests::test_gaussian_forward_equals_backward_simple_example ... ok
Oct 16 16:58:03.524 INFO blam! test stats::hmm::tests::test_gaussian_forward_simple_example ... ok
Oct 16 16:58:03.524 INFO blam! test stats::hmm::tests::test_gaussian_viterbi_simple_example ... ok
Oct 16 16:58:03.524 INFO blam! test stats::pairhmm::tests::test_deletion ... ok
Oct 16 16:58:03.524 INFO blam! test pattern_matching::pssm::protmotif::tests::test_mono_err ... ok
Oct 16 16:58:03.524 INFO blam! test pattern_matching::pssm::dnamotif::tests::simple_pssm ... ok
Oct 16 16:58:03.524 INFO blam! test pattern_matching::pssm::dnamotif::tests::test_inconsist_err ... ok
Oct 16 16:58:03.524 INFO blam! test pattern_matching::shift_and::tests::test_find_all ... ok
Oct 16 16:58:03.525 INFO blam! test stats::pairhmm::tests::test_same ... ok
Oct 16 16:58:03.537 INFO blam! test stats::pairhmm::tests::test_mismatch ... ok
Oct 16 16:58:03.537 INFO blam! test stats::pairhmm::tests::test_insertion ... ok
Oct 16 16:58:03.537 INFO blam! test stats::probs::tests::test_cumsum ... ok
Oct 16 16:58:03.537 INFO blam! test stats::probs::tests::test_empty_sum ... ok
Oct 16 16:58:03.537 INFO blam! test stats::hmm::tests::test_discrete_viterbi_toy_example ... ok
Oct 16 16:58:03.537 INFO blam! test stats::probs::cdf::test::test_cdf ... ok
Oct 16 16:58:03.537 INFO blam! test stats::probs::tests::test_simpsons_integrate ... ok
Oct 16 16:58:03.537 INFO blam! test stats::probs::tests::test_sub ... ok
Oct 16 16:58:03.537 INFO blam! test stats::probs::tests::test_sum ... ok
Oct 16 16:58:03.537 INFO blam! test stats::probs::tests::test_sum_one_zero ... ok
Oct 16 16:58:03.537 INFO blam! test stats::probs::tests::test_trapezoidal_integrate ... ok
Oct 16 16:58:03.537 INFO blam! test stats::probs::tests::test_one_minus ... ok
Oct 16 16:58:03.537 INFO blam! test stats::probs::tests::test_zero ... ok
Oct 16 16:58:03.537 INFO blam! test stats::probs::tests::test_cap_numerical_overshoot ... ok
Oct 16 16:58:03.537 INFO blam! test utils::interval::tests::negative_width_range ... ok
Oct 16 16:58:03.537 INFO blam! test utils::tests::test_strand ... ok
Oct 16 16:58:03.545 INFO blam! test utils::tests::test_prescan ... ok
Oct 16 16:58:03.545 INFO blam! test utils::tests::test_scan ... ok
Oct 16 16:58:03.545 INFO blam! test utils::interval::tests::range_interval_conversions ... ok
Oct 16 16:58:03.550 INFO blam! test utils::text::tests::test_print_sequence ... ok
Oct 16 16:58:03.550 INFO blam! test stats::probs::tests::test_cap_numerical_overshoot_panic ... ok
Oct 16 16:58:03.559 INFO blam! test alignment::pairwise::banded::banded::test_big ... ok
Oct 16 16:58:03.623 INFO blam! test stats::hmm::tests::test_discrete_forward_equals_backward_toy_example ... ok
Oct 16 16:58:03.623 INFO blam! 
Oct 16 16:58:03.623 INFO blam! test result: ok. 227 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
Oct 16 16:58:03.624 INFO blam! 
Oct 16 16:58:03.627 INFO kablam!    Doc-tests bio
Oct 16 16:58:09.475 INFO blam! 
Oct 16 16:58:09.475 INFO blam! running 42 tests
Oct 16 16:58:57.768 INFO blam! test src/alignment/pairwise/mod.rs - alignment::pairwise (line 13) ... ok
Oct 16 16:58:58.695 INFO blam! test <::custom_derive::custom_derive macros> - stats::probs::PHREDProb (line 46) ... ok
Oct 16 16:58:59.639 INFO blam! test src/alignment/distance.rs - alignment::distance::levenshtein (line 48) ... ok
Oct 16 16:59:01.111 INFO blam! test <::custom_derive::custom_derive macros> - stats::probs::Prob (line 46) ... ok
Oct 16 16:59:01.887 INFO blam! test src/alignment/sparse.rs - alignment::sparse (line 18) ... ok
Oct 16 16:59:01.927 INFO blam! test src/alignment/distance.rs - alignment::distance::hamming (line 16) ... ok
Oct 16 16:59:02.487 INFO blam! test <::custom_derive::custom_derive macros> - stats::probs::LogProb (line 46) ... ok
Oct 16 16:59:02.697 INFO blam! test src/alignment/pairwise/banded.rs - alignment::pairwise::banded (line 20) ... ok
Oct 16 16:59:37.839 INFO blam! test src/data_structures/bwt.rs - data_structures::bwt::bwt (line 42) ... ok
Oct 16 16:59:39.303 INFO blam! test src/alphabets/protein.rs - alphabets::protein (line 10) ... ok
Oct 16 16:59:41.327 INFO blam! test src/alphabets/mod.rs - alphabets (line 10) ... ok
Oct 16 16:59:45.011 INFO blam! test src/data_structures/bitenc.rs - data_structures::bitenc (line 11) ... ok
Oct 16 16:59:45.011 INFO blam! test src/alphabets/dna.rs - alphabets::dna (line 10) ... ok
Oct 16 16:59:46.075 INFO blam! test src/data_structures/bit_tree.rs - data_structures::bit_tree (line 12) ... ok
Oct 16 16:59:47.371 INFO blam! test src/data_structures/fmindex.rs - data_structures::fmindex (line 12) ... ok
Oct 16 16:59:49.616 INFO blam! test src/alphabets/rna.rs - alphabets::rna (line 10) ... ok
Oct 16 17:00:13.399 INFO blam! test src/data_structures/fmindex.rs - data_structures::fmindex (line 34) ... ok
Oct 16 17:00:22.703 INFO blam! test src/data_structures/fmindex.rs - data_structures::fmindex::FMIndexable::backward_search (line 98) ... ok
Oct 16 17:00:24.899 INFO blam! test src/data_structures/interval_tree.rs - data_structures::interval_tree (line 14) ... ok
Oct 16 17:00:24.931 INFO blam! test src/data_structures/fmindex.rs - data_structures::fmindex::FMDIndex<DBWT, DLess, DOcc>::smems (line 266) ... ok
Oct 16 17:00:26.996 INFO blam! test src/data_structures/qgram_index.rs - data_structures::qgram_index (line 10) ... ok
Oct 16 17:00:28.267 INFO blam! test src/data_structures/smallints.rs - data_structures::smallints (line 13) ... ok
Oct 16 17:00:29.099 INFO blam! test src/data_structures/rank_select.rs - data_structures::rank_select (line 11) ... ok
Oct 16 17:00:29.723 INFO blam! test src/data_structures/suffix_array.rs - data_structures::suffix_array::lcp (line 239) ... ok
Oct 16 17:00:41.823 INFO blam! test src/data_structures/suffix_array.rs - data_structures::suffix_array::shortest_unique_substrings (line 304) ... ok
Oct 16 17:00:58.815 INFO blam! test src/data_structures/suffix_array.rs - data_structures::suffix_array::suffix_array (line 198) ... ok
Oct 16 17:00:59.159 INFO blam! test src/io/fasta.rs - io::fasta (line 10) ... ok
Oct 16 17:00:59.231 INFO blam! test src/io/fastq.rs - io::fastq (line 10) ... ok
Oct 16 17:01:00.895 INFO blam! test src/io/bed.rs - io::bed (line 10) ... ok
Oct 16 17:01:01.351 INFO blam! test src/lib.rs -  (line 31) ... ok
Oct 16 17:01:02.867 INFO blam! test src/io/gff.rs - io::gff (line 14) ... ok
Oct 16 17:01:03.583 INFO blam! test src/lib.rs -  (line 54) ... ok
Oct 16 17:01:13.663 INFO blam! test src/pattern_matching/bndm.rs - pattern_matching::bndm (line 12) ... ok
Oct 16 17:01:28.039 INFO blam! test src/pattern_matching/myers.rs - pattern_matching::myers (line 13) ... ok
Oct 16 17:01:29.055 INFO blam! test src/pattern_matching/bom.rs - pattern_matching::bom (line 12) ... ok
Oct 16 17:01:31.291 INFO blam! test src/pattern_matching/kmp.rs - pattern_matching::kmp (line 16) ... ok
Oct 16 17:01:31.773 INFO blam! test src/pattern_matching/shift_and.rs - pattern_matching::shift_and (line 12) ... ok
Oct 16 17:01:33.101 INFO blam! test src/pattern_matching/horspool.rs - pattern_matching::horspool (line 32) ... ok
Oct 16 17:01:33.959 INFO blam! test src/seq_analysis/orf.rs - seq_analysis::orf (line 12) ... ok
Oct 16 17:01:35.203 INFO blam! test src/pattern_matching/ukkonen.rs - pattern_matching::ukkonen (line 17) ... ok
Oct 16 17:01:38.043 INFO blam! test src/stats/hmm.rs - stats::hmm (line 15) ... ok
Oct 16 17:01:42.651 INFO blam! test src/stats/hmm.rs - stats::hmm (line 37) ... ok
Oct 16 17:01:42.652 INFO blam! 
Oct 16 17:01:42.652 INFO blam! test result: ok. 42 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
Oct 16 17:01:42.652 INFO blam! 
Oct 16 17:01:42.683 INFO kablam! su: No module specific data is present
Oct 16 17:01:44.043 INFO running `"docker" "rm" "-f" "052611ad2c8474d256aba8cb5da16fc76649c168b2dac74361e55a26567d37fb"`
Oct 16 17:01:44.315 INFO blam! 052611ad2c8474d256aba8cb5da16fc76649c168b2dac74361e55a26567d37fb