Oct 15 06:01:36.676 INFO testing TuBieJun/consensus against try#40d4795669493f1965de7c44029c69552134fe1f for rustdoc-test-static-cling-1 Oct 15 06:01:36.676 INFO running `"docker" "create" "-v" "/mnt/big/crater/./work/local/target-dirs/rustdoc-test-static-cling-1/worker-2/try#40d4795669493f1965de7c44029c69552134fe1f:/target:rw,Z" "-v" "/mnt/big/crater/./work/local/test-source/worker-2/rustdoc-test-static-cling-1/try#40d4795669493f1965de7c44029c69552134fe1f:/source:ro,Z" "-v" "/mnt/big/crater/./work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/./work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +40d4795669493f1965de7c44029c69552134fe1f-alt build --frozen" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"` Oct 15 06:01:37.177 INFO blam! e56c09de76bbc5da94b6f766bd3be2db5b740565d70d4bc4b703d3df724b4f8e Oct 15 06:01:37.179 INFO running `"docker" "start" "-a" "e56c09de76bbc5da94b6f766bd3be2db5b740565d70d4bc4b703d3df724b4f8e"` Oct 15 06:01:39.023 INFO kablam! usermod: no changes Oct 15 06:01:39.151 INFO kablam! Compiling quick-error v1.2.1 Oct 15 06:01:39.152 INFO kablam! Compiling ieee754 v0.2.2 Oct 15 06:01:39.152 INFO kablam! Compiling custom_derive v0.1.7 Oct 15 06:01:39.159 INFO kablam! Compiling itertools v0.6.5 Oct 15 06:01:39.159 INFO kablam! Compiling newtype_derive v0.1.6 Oct 15 06:01:40.223 INFO kablam! Compiling fs-utils v1.0.0 Oct 15 06:01:42.679 INFO kablam! Compiling rust-htslib v0.15.0 Oct 15 06:02:14.723 INFO kablam! Compiling consensus v0.1.0 (/source) Oct 15 06:02:15.779 INFO kablam! warning: unused import: `std::env` Oct 15 06:02:15.779 INFO kablam! --> src/main.rs:12:5 Oct 15 06:02:15.779 INFO kablam! | Oct 15 06:02:15.779 INFO kablam! 12 | use std::env; Oct 15 06:02:15.779 INFO kablam! | ^^^^^^^^ Oct 15 06:02:15.779 INFO kablam! | Oct 15 06:02:15.779 INFO kablam! = note: #[warn(unused_imports)] on by default Oct 15 06:02:15.779 INFO kablam! Oct 15 06:02:15.779 INFO kablam! warning: unused import: `rust_htslib::prelude::*` Oct 15 06:02:15.779 INFO kablam! --> src/main.rs:16:5 Oct 15 06:02:15.779 INFO kablam! | Oct 15 06:02:15.779 INFO kablam! 16 | use rust_htslib::prelude::*; Oct 15 06:02:15.779 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^ Oct 15 06:02:15.779 INFO kablam! Oct 15 06:02:15.779 INFO kablam! warning: unused import: `std::io` Oct 15 06:02:15.779 INFO kablam! --> src/main.rs:21:5 Oct 15 06:02:15.779 INFO kablam! | Oct 15 06:02:15.779 INFO kablam! 21 | use std::io; Oct 15 06:02:15.779 INFO kablam! | ^^^^^^^ Oct 15 06:02:15.779 INFO kablam! Oct 15 06:02:15.779 INFO kablam! warning: unused import: `PathBuf` Oct 15 06:02:15.779 INFO kablam! --> src/main.rs:25:23 Oct 15 06:02:15.779 INFO kablam! | Oct 15 06:02:15.779 INFO kablam! 25 | use std::path::{Path, PathBuf}; Oct 15 06:02:15.779 INFO kablam! | ^^^^^^^ Oct 15 06:02:15.780 INFO kablam! Oct 15 06:02:15.780 INFO kablam! warning: unused import: `SubCommand` Oct 15 06:02:15.780 INFO kablam! --> src/main.rs:26:22 Oct 15 06:02:15.780 INFO kablam! | Oct 15 06:02:15.780 INFO kablam! 26 | use clap::{Arg, App, SubCommand}; Oct 15 06:02:15.780 INFO kablam! | ^^^^^^^^^^ Oct 15 06:02:15.780 INFO kablam! Oct 15 06:02:15.780 INFO kablam! warning: unnecessary parentheses around `if` condition Oct 15 06:02:15.780 INFO kablam! --> src/main.rs:218:20 Oct 15 06:02:15.780 INFO kablam! | Oct 15 06:02:15.780 INFO kablam! 218 | if (num_position[&(i as usize)] == num_position[&(0 as usize)]) { Oct 15 06:02:15.780 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: remove these parentheses Oct 15 06:02:15.780 INFO kablam! | Oct 15 06:02:15.780 INFO kablam! = note: #[warn(unused_parens)] on by default Oct 15 06:02:15.780 INFO kablam! Oct 15 06:02:15.780 INFO kablam! warning: unnecessary parentheses around `if` condition Oct 15 06:02:15.780 INFO kablam! --> src/main.rs:239:16 Oct 15 06:02:15.780 INFO kablam! | Oct 15 06:02:15.780 INFO kablam! 239 | if (baseEach_percent_record.len() > 0) { Oct 15 06:02:15.780 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: remove these parentheses Oct 15 06:02:15.780 INFO kablam! Oct 15 06:02:15.922 INFO kablam! warning: unused import: `std::io::prelude` Oct 15 06:02:15.922 INFO kablam! --> src/main.rs:22:5 Oct 15 06:02:15.922 INFO kablam! | Oct 15 06:02:15.922 INFO kablam! 22 | use std::io::prelude::*; Oct 15 06:02:15.922 INFO kablam! | ^^^^^^^^^^^^^^^^ Oct 15 06:02:15.922 INFO kablam! Oct 15 06:02:15.933 INFO kablam! warning: unused variable: `consensus_base` Oct 15 06:02:15.933 INFO kablam! --> src/main.rs:139:9 Oct 15 06:02:15.933 INFO kablam! | Oct 15 06:02:15.934 INFO kablam! 139 | let consensus_base:Vec = Vec::new(); Oct 15 06:02:15.934 INFO kablam! | ^^^^^^^^^^^^^^ help: consider using `_consensus_base` instead Oct 15 06:02:15.934 INFO kablam! | Oct 15 06:02:15.934 INFO kablam! = note: #[warn(unused_variables)] on by default Oct 15 06:02:15.936 INFO kablam! Oct 15 06:02:15.936 INFO kablam! warning: unused variable: `consensus_source_reads` Oct 15 06:02:15.936 INFO kablam! --> src/main.rs:144:13 Oct 15 06:02:15.936 INFO kablam! | Oct 15 06:02:15.936 INFO kablam! 144 | let mut consensus_source_reads = String::new(); Oct 15 06:02:15.936 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^ help: consider using `_consensus_source_reads` instead Oct 15 06:02:15.936 INFO kablam! Oct 15 06:02:15.936 INFO kablam! warning: unused variable: `chrom` Oct 15 06:02:15.936 INFO kablam! --> src/main.rs:283:121 Oct 15 06:02:15.936 INFO kablam! | Oct 15 06:02:15.936 INFO kablam! 283 | fn block_consensus(pd:& mut HashMap, Vec, Vec, CigarStringView, bool)>>>, chrom: i32, use_check:bool, min_t_s: &u32, min_t_p: &f32, o_r1: & mut File, o_r2: & mut File, need_trim:bool) { Oct 15 06:02:15.936 INFO kablam! | ^^^^^ help: consider using `_chrom` instead Oct 15 06:02:15.936 INFO kablam! Oct 15 06:02:15.936 INFO kablam! warning: value assigned to `new_seq_b` is never read Oct 15 06:02:15.936 INFO kablam! --> src/main.rs:370:21 Oct 15 06:02:15.936 INFO kablam! | Oct 15 06:02:15.936 INFO kablam! 370 | let mut new_seq_b:Vec = Vec::new(); Oct 15 06:02:15.936 INFO kablam! | ^^^^^^^^^ Oct 15 06:02:15.936 INFO kablam! | Oct 15 06:02:15.936 INFO kablam! = note: #[warn(unused_assignments)] on by default Oct 15 06:02:15.936 INFO kablam! Oct 15 06:02:15.942 INFO kablam! warning: variable does not need to be mutable Oct 15 06:02:15.942 INFO kablam! --> src/main.rs:74:9 Oct 15 06:02:15.942 INFO kablam! | Oct 15 06:02:15.942 INFO kablam! 74 | let mut pair; Oct 15 06:02:15.942 INFO kablam! | ----^^^^ Oct 15 06:02:15.942 INFO kablam! | | Oct 15 06:02:15.942 INFO kablam! | help: remove this `mut` Oct 15 06:02:15.942 INFO kablam! | Oct 15 06:02:15.942 INFO kablam! = note: #[warn(unused_mut)] on by default Oct 15 06:02:15.942 INFO kablam! Oct 15 06:02:15.942 INFO kablam! warning: variable does not need to be mutable Oct 15 06:02:15.942 INFO kablam! --> src/main.rs:75:9 Oct 15 06:02:15.942 INFO kablam! | Oct 15 06:02:15.942 INFO kablam! 75 | let mut strand; Oct 15 06:02:15.942 INFO kablam! | ----^^^^^^ Oct 15 06:02:15.942 INFO kablam! | | Oct 15 06:02:15.942 INFO kablam! | help: remove this `mut` Oct 15 06:02:15.942 INFO kablam! Oct 15 06:02:15.942 INFO kablam! warning: variable does not need to be mutable Oct 15 06:02:15.942 INFO kablam! --> src/main.rs:76:9 Oct 15 06:02:15.942 INFO kablam! | Oct 15 06:02:15.942 INFO kablam! 76 | let mut aln_pos; Oct 15 06:02:15.942 INFO kablam! | ----^^^^^^^ Oct 15 06:02:15.942 INFO kablam! | | Oct 15 06:02:15.942 INFO kablam! | help: remove this `mut` Oct 15 06:02:15.942 INFO kablam! Oct 15 06:02:15.966 INFO kablam! warning: variable does not need to be mutable Oct 15 06:02:15.967 INFO kablam! --> src/main.rs:144:9 Oct 15 06:02:15.967 INFO kablam! | Oct 15 06:02:15.967 INFO kablam! 144 | let mut consensus_source_reads = String::new(); Oct 15 06:02:15.967 INFO kablam! | ----^^^^^^^^^^^^^^^^^^^^^^ Oct 15 06:02:15.967 INFO kablam! | | Oct 15 06:02:15.967 INFO kablam! | help: remove this `mut` Oct 15 06:02:15.967 INFO kablam! Oct 15 06:02:15.967 INFO kablam! warning: variable does not need to be mutable Oct 15 06:02:15.967 INFO kablam! --> src/main.rs:151:9 Oct 15 06:02:15.967 INFO kablam! | Oct 15 06:02:15.967 INFO kablam! 151 | let mut top_cigar:&CigarStringView; Oct 15 06:02:15.967 INFO kablam! | ----^^^^^^^^^ Oct 15 06:02:15.967 INFO kablam! | | Oct 15 06:02:15.967 INFO kablam! | help: remove this `mut` Oct 15 06:02:15.967 INFO kablam! Oct 15 06:02:15.981 INFO kablam! warning: variable does not need to be mutable Oct 15 06:02:15.981 INFO kablam! --> src/main.rs:338:9 Oct 15 06:02:15.981 INFO kablam! | Oct 15 06:02:15.981 INFO kablam! 338 | let mut need_trim:bool; Oct 15 06:02:15.982 INFO kablam! | ----^^^^^^^^^ Oct 15 06:02:15.982 INFO kablam! | | Oct 15 06:02:15.982 INFO kablam! | help: remove this `mut` Oct 15 06:02:15.982 INFO kablam! Oct 15 06:02:15.983 INFO kablam! warning: variable does not need to be mutable Oct 15 06:02:15.983 INFO kablam! --> src/main.rs:355:9 Oct 15 06:02:15.983 INFO kablam! | Oct 15 06:02:15.983 INFO kablam! 355 | let mut chrom = 0; Oct 15 06:02:15.984 INFO kablam! | ----^^^^^ Oct 15 06:02:15.984 INFO kablam! | | Oct 15 06:02:15.984 INFO kablam! | help: remove this `mut` Oct 15 06:02:15.984 INFO kablam! Oct 15 06:02:15.997 INFO kablam! warning: function `bamLineParse` should have a snake case name such as `bam_line_parse` Oct 15 06:02:15.997 INFO kablam! --> src/main.rs:68:1 Oct 15 06:02:15.998 INFO kablam! | Oct 15 06:02:15.998 INFO kablam! 68 | / fn bamLineParse(record:&Record) -> (String, String, String, i32, i32){ Oct 15 06:02:15.998 INFO kablam! 69 | | Oct 15 06:02:15.998 INFO kablam! 70 | | let qname_str = String::from_utf8_lossy(record.qname()).to_string(); Oct 15 06:02:15.999 INFO kablam! 71 | | let temp_v:Vec<&str> = qname_str.split('#').collect(); Oct 15 06:02:15.999 INFO kablam! ... | Oct 15 06:02:15.999 INFO kablam! 97 | | (index, pair.to_string(), strand.to_string(), insert_size.abs(), aln_pos) Oct 15 06:02:16.000 INFO kablam! 98 | | } Oct 15 06:02:16.000 INFO kablam! | |_^ Oct 15 06:02:16.000 INFO kablam! | Oct 15 06:02:16.000 INFO kablam! = note: #[warn(non_snake_case)] on by default Oct 15 06:02:16.001 INFO kablam! Oct 15 06:02:16.002 INFO kablam! warning: variable `baseEach_num_record` should have a snake case name such as `base_each_num_record` Oct 15 06:02:16.002 INFO kablam! --> src/main.rs:147:9 Oct 15 06:02:16.002 INFO kablam! | Oct 15 06:02:16.002 INFO kablam! 147 | let mut baseEach_num_record = String::new(); Oct 15 06:02:16.003 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^ Oct 15 06:02:16.003 INFO kablam! Oct 15 06:02:16.003 INFO kablam! warning: variable `baseEach_percent_record` should have a snake case name such as `base_each_percent_record` Oct 15 06:02:16.003 INFO kablam! --> src/main.rs:148:9 Oct 15 06:02:16.004 INFO kablam! | Oct 15 06:02:16.004 INFO kablam! 148 | let mut baseEach_percent_record = String::new(); Oct 15 06:02:16.004 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ Oct 15 06:02:16.004 INFO kablam! Oct 15 06:02:16.005 INFO kablam! warning: unused `std::result::Result` which must be used Oct 15 06:02:16.005 INFO kablam! --> src/main.rs:267:9 Oct 15 06:02:16.006 INFO kablam! | Oct 15 06:02:16.006 INFO kablam! 267 | o_buff.write(&member_record.2); Oct 15 06:02:16.006 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Oct 15 06:02:16.007 INFO kablam! | Oct 15 06:02:16.007 INFO kablam! = note: #[warn(unused_must_use)] on by default Oct 15 06:02:16.007 INFO kablam! = note: this `Result` may be an `Err` variant, which should be handled Oct 15 06:02:16.007 INFO kablam! Oct 15 06:02:16.008 INFO kablam! warning: unused `std::result::Result` which must be used Oct 15 06:02:16.008 INFO kablam! --> src/main.rs:269:9 Oct 15 06:02:16.008 INFO kablam! | Oct 15 06:02:16.009 INFO kablam! 269 | o_buff.write(&member_record.0); Oct 15 06:02:16.009 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Oct 15 06:02:16.009 INFO kablam! | Oct 15 06:02:16.009 INFO kablam! = note: this `Result` may be an `Err` variant, which should be handled Oct 15 06:02:16.010 INFO kablam! Oct 15 06:02:16.010 INFO kablam! warning: unused `std::result::Result` which must be used Oct 15 06:02:16.010 INFO kablam! --> src/main.rs:272:9 Oct 15 06:02:16.011 INFO kablam! | Oct 15 06:02:16.011 INFO kablam! 272 | o_buff.write(&real_qual_temp); Oct 15 06:02:16.011 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Oct 15 06:02:16.011 INFO kablam! | Oct 15 06:02:16.012 INFO kablam! = note: this `Result` may be an `Err` variant, which should be handled Oct 15 06:02:16.012 INFO kablam! Oct 15 06:02:16.012 INFO kablam! warning: unused `std::result::Result` which must be used Oct 15 06:02:16.012 INFO kablam! --> src/main.rs:274:5 Oct 15 06:02:16.013 INFO kablam! | Oct 15 06:02:16.013 INFO kablam! 274 | o_buff.write(b"\n"); Oct 15 06:02:16.013 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^ Oct 15 06:02:16.014 INFO kablam! | Oct 15 06:02:16.014 INFO kablam! = note: this `Result` may be an `Err` variant, which should be handled Oct 15 06:02:16.014 INFO kablam! Oct 15 06:02:16.014 INFO kablam! warning: unused `std::result::Result` which must be used Oct 15 06:02:16.015 INFO kablam! --> src/main.rs:277:5 Oct 15 06:02:16.015 INFO kablam! | Oct 15 06:02:16.015 INFO kablam! 277 | o_buff.write(b"\n"); Oct 15 06:02:16.016 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^ Oct 15 06:02:16.016 INFO kablam! | Oct 15 06:02:16.016 INFO kablam! = note: this `Result` may be an `Err` variant, which should be handled Oct 15 06:02:16.016 INFO kablam! Oct 15 06:02:16.017 INFO kablam! warning: unused `std::result::Result` which must be used Oct 15 06:02:16.017 INFO kablam! --> src/main.rs:280:5 Oct 15 06:02:16.017 INFO kablam! | Oct 15 06:02:16.017 INFO kablam! 280 | o_buff.write(b"\n"); Oct 15 06:02:16.017 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^ Oct 15 06:02:16.017 INFO kablam! | Oct 15 06:02:16.018 INFO kablam! = note: this `Result` may be an `Err` variant, which should be handled Oct 15 06:02:16.018 INFO kablam! Oct 15 06:02:16.018 INFO kablam! warning: variable `key_dupGroup` should have a snake case name such as `key_dup_group` Oct 15 06:02:16.019 INFO kablam! --> src/main.rs:286:10 Oct 15 06:02:16.019 INFO kablam! | Oct 15 06:02:16.019 INFO kablam! 286 | for (key_dupGroup, pair_dup) in pd.iter() { Oct 15 06:02:16.019 INFO kablam! | ^^^^^^^^^^^^ Oct 15 06:02:16.020 INFO kablam! Oct 15 06:02:16.020 INFO kablam! warning: variable `position_dupGroup` should have a snake case name such as `position_dup_group` Oct 15 06:02:16.021 INFO kablam! --> src/main.rs:357:9 Oct 15 06:02:16.021 INFO kablam! | Oct 15 06:02:16.021 INFO kablam! 357 | let mut position_dupGroup: HashMap, Vec, Vec, CigarStringView, bool)>>> = HashMap::new(); Oct 15 06:02:16.021 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^ Oct 15 06:02:16.022 INFO kablam! Oct 15 06:02:16.022 INFO kablam! warning: variable `key_dupGroup` should have a snake case name such as `key_dup_group` Oct 15 06:02:16.022 INFO kablam! --> src/main.rs:387:17 Oct 15 06:02:16.023 INFO kablam! | Oct 15 06:02:16.023 INFO kablam! 387 | let key_dupGroup = format!("{}_{}_{}_{}{}", index, chrom, aln_pos, strand, insert_size); Oct 15 06:02:16.023 INFO kablam! | ^^^^^^^^^^^^ Oct 15 06:02:16.023 INFO kablam! Oct 15 06:02:19.746 INFO kablam! Finished dev [unoptimized + debuginfo] target(s) in 40.70s Oct 15 06:02:19.751 INFO kablam! su: No module specific data is present Oct 15 06:02:21.645 INFO running `"docker" "rm" "-f" "e56c09de76bbc5da94b6f766bd3be2db5b740565d70d4bc4b703d3df724b4f8e"` Oct 15 06:02:22.015 INFO blam! e56c09de76bbc5da94b6f766bd3be2db5b740565d70d4bc4b703d3df724b4f8e Oct 15 06:02:22.019 INFO running `"docker" "create" "-v" "/mnt/big/crater/./work/local/target-dirs/rustdoc-test-static-cling-1/worker-2/try#40d4795669493f1965de7c44029c69552134fe1f:/target:rw,Z" "-v" "/mnt/big/crater/./work/local/test-source/worker-2/rustdoc-test-static-cling-1/try#40d4795669493f1965de7c44029c69552134fe1f:/source:ro,Z" "-v" "/mnt/big/crater/./work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/./work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +40d4795669493f1965de7c44029c69552134fe1f-alt test --frozen --no-run" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"` Oct 15 06:02:22.633 INFO blam! fb35bb78d4055a2f814d8684cc97db79411ead6b8cf7626c006ab51e07420008 Oct 15 06:02:22.636 INFO running `"docker" "start" "-a" "fb35bb78d4055a2f814d8684cc97db79411ead6b8cf7626c006ab51e07420008"` Oct 15 06:02:24.557 INFO kablam! usermod: no changes Oct 15 06:02:24.720 INFO kablam! Compiling consensus v0.1.0 (/source) Oct 15 06:02:26.079 INFO kablam! warning: unused import: `std::env` Oct 15 06:02:26.079 INFO kablam! --> src/main.rs:12:5 Oct 15 06:02:26.079 INFO kablam! | Oct 15 06:02:26.079 INFO kablam! 12 | use std::env; Oct 15 06:02:26.079 INFO kablam! | ^^^^^^^^ Oct 15 06:02:26.079 INFO kablam! | Oct 15 06:02:26.079 INFO kablam! = note: #[warn(unused_imports)] on by default Oct 15 06:02:26.079 INFO kablam! Oct 15 06:02:26.079 INFO kablam! warning: unused import: `rust_htslib::prelude::*` Oct 15 06:02:26.079 INFO kablam! --> src/main.rs:16:5 Oct 15 06:02:26.079 INFO kablam! | Oct 15 06:02:26.079 INFO kablam! 16 | use rust_htslib::prelude::*; Oct 15 06:02:26.079 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^ Oct 15 06:02:26.079 INFO kablam! Oct 15 06:02:26.079 INFO kablam! warning: unused import: `std::io` Oct 15 06:02:26.079 INFO kablam! --> src/main.rs:21:5 Oct 15 06:02:26.079 INFO kablam! | Oct 15 06:02:26.079 INFO kablam! 21 | use std::io; Oct 15 06:02:26.079 INFO kablam! | ^^^^^^^ Oct 15 06:02:26.082 INFO kablam! Oct 15 06:02:26.082 INFO kablam! warning: unused import: `PathBuf` Oct 15 06:02:26.082 INFO kablam! --> src/main.rs:25:23 Oct 15 06:02:26.082 INFO kablam! | Oct 15 06:02:26.082 INFO kablam! 25 | use std::path::{Path, PathBuf}; Oct 15 06:02:26.082 INFO kablam! | ^^^^^^^ Oct 15 06:02:26.082 INFO kablam! Oct 15 06:02:26.082 INFO kablam! warning: unused import: `SubCommand` Oct 15 06:02:26.082 INFO kablam! --> src/main.rs:26:22 Oct 15 06:02:26.082 INFO kablam! | Oct 15 06:02:26.082 INFO kablam! 26 | use clap::{Arg, App, SubCommand}; Oct 15 06:02:26.082 INFO kablam! | ^^^^^^^^^^ Oct 15 06:02:26.082 INFO kablam! Oct 15 06:02:26.082 INFO kablam! warning: unnecessary parentheses around `if` condition Oct 15 06:02:26.082 INFO kablam! --> src/main.rs:218:20 Oct 15 06:02:26.082 INFO kablam! | Oct 15 06:02:26.082 INFO kablam! 218 | if (num_position[&(i as usize)] == num_position[&(0 as usize)]) { Oct 15 06:02:26.082 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: remove these parentheses Oct 15 06:02:26.082 INFO kablam! | Oct 15 06:02:26.082 INFO kablam! = note: #[warn(unused_parens)] on by default Oct 15 06:02:26.082 INFO kablam! Oct 15 06:02:26.082 INFO kablam! warning: unnecessary parentheses around `if` condition Oct 15 06:02:26.082 INFO kablam! --> src/main.rs:239:16 Oct 15 06:02:26.082 INFO kablam! | Oct 15 06:02:26.082 INFO kablam! 239 | if (baseEach_percent_record.len() > 0) { Oct 15 06:02:26.082 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: remove these parentheses Oct 15 06:02:26.082 INFO kablam! Oct 15 06:02:26.235 INFO kablam! warning: unused import: `std::io::prelude` Oct 15 06:02:26.235 INFO kablam! --> src/main.rs:22:5 Oct 15 06:02:26.235 INFO kablam! | Oct 15 06:02:26.235 INFO kablam! 22 | use std::io::prelude::*; Oct 15 06:02:26.235 INFO kablam! | ^^^^^^^^^^^^^^^^ Oct 15 06:02:26.235 INFO kablam! Oct 15 06:02:26.247 INFO kablam! warning: unused variable: `consensus_base` Oct 15 06:02:26.247 INFO kablam! --> src/main.rs:139:9 Oct 15 06:02:26.247 INFO kablam! | Oct 15 06:02:26.247 INFO kablam! 139 | let consensus_base:Vec = Vec::new(); Oct 15 06:02:26.247 INFO kablam! | ^^^^^^^^^^^^^^ help: consider using `_consensus_base` instead Oct 15 06:02:26.247 INFO kablam! | Oct 15 06:02:26.247 INFO kablam! = note: #[warn(unused_variables)] on by default Oct 15 06:02:26.247 INFO kablam! Oct 15 06:02:26.247 INFO kablam! warning: unused variable: `consensus_source_reads` Oct 15 06:02:26.247 INFO kablam! --> src/main.rs:144:13 Oct 15 06:02:26.247 INFO kablam! | Oct 15 06:02:26.247 INFO kablam! 144 | let mut consensus_source_reads = String::new(); Oct 15 06:02:26.247 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^ help: consider using `_consensus_source_reads` instead Oct 15 06:02:26.247 INFO kablam! Oct 15 06:02:26.247 INFO kablam! warning: unused variable: `chrom` Oct 15 06:02:26.247 INFO kablam! --> src/main.rs:283:121 Oct 15 06:02:26.247 INFO kablam! | Oct 15 06:02:26.247 INFO kablam! 283 | fn block_consensus(pd:& mut HashMap, Vec, Vec, CigarStringView, bool)>>>, chrom: i32, use_check:bool, min_t_s: &u32, min_t_p: &f32, o_r1: & mut File, o_r2: & mut File, need_trim:bool) { Oct 15 06:02:26.247 INFO kablam! | ^^^^^ help: consider using `_chrom` instead Oct 15 06:02:26.247 INFO kablam! Oct 15 06:02:26.247 INFO kablam! warning: value assigned to `new_seq_b` is never read Oct 15 06:02:26.247 INFO kablam! --> src/main.rs:370:21 Oct 15 06:02:26.247 INFO kablam! | Oct 15 06:02:26.247 INFO kablam! 370 | let mut new_seq_b:Vec = Vec::new(); Oct 15 06:02:26.247 INFO kablam! | ^^^^^^^^^ Oct 15 06:02:26.247 INFO kablam! | Oct 15 06:02:26.247 INFO kablam! = note: #[warn(unused_assignments)] on by default Oct 15 06:02:26.247 INFO kablam! Oct 15 06:02:26.255 INFO kablam! warning: variable does not need to be mutable Oct 15 06:02:26.255 INFO kablam! --> src/main.rs:74:9 Oct 15 06:02:26.255 INFO kablam! | Oct 15 06:02:26.255 INFO kablam! 74 | let mut pair; Oct 15 06:02:26.255 INFO kablam! | ----^^^^ Oct 15 06:02:26.255 INFO kablam! | | Oct 15 06:02:26.255 INFO kablam! | help: remove this `mut` Oct 15 06:02:26.255 INFO kablam! | Oct 15 06:02:26.255 INFO kablam! = note: #[warn(unused_mut)] on by default Oct 15 06:02:26.255 INFO kablam! Oct 15 06:02:26.255 INFO kablam! warning: variable does not need to be mutable Oct 15 06:02:26.255 INFO kablam! --> src/main.rs:75:9 Oct 15 06:02:26.255 INFO kablam! | Oct 15 06:02:26.255 INFO kablam! 75 | let mut strand; Oct 15 06:02:26.255 INFO kablam! | ----^^^^^^ Oct 15 06:02:26.255 INFO kablam! | | Oct 15 06:02:26.255 INFO kablam! | help: remove this `mut` Oct 15 06:02:26.255 INFO kablam! Oct 15 06:02:26.255 INFO kablam! warning: variable does not need to be mutable Oct 15 06:02:26.255 INFO kablam! --> src/main.rs:76:9 Oct 15 06:02:26.255 INFO kablam! | Oct 15 06:02:26.255 INFO kablam! 76 | let mut aln_pos; Oct 15 06:02:26.255 INFO kablam! | ----^^^^^^^ Oct 15 06:02:26.255 INFO kablam! | | Oct 15 06:02:26.255 INFO kablam! | help: remove this `mut` Oct 15 06:02:26.255 INFO kablam! Oct 15 06:02:26.275 INFO kablam! warning: variable does not need to be mutable Oct 15 06:02:26.275 INFO kablam! --> src/main.rs:144:9 Oct 15 06:02:26.275 INFO kablam! | Oct 15 06:02:26.275 INFO kablam! 144 | let mut consensus_source_reads = String::new(); Oct 15 06:02:26.275 INFO kablam! | ----^^^^^^^^^^^^^^^^^^^^^^ Oct 15 06:02:26.275 INFO kablam! | | Oct 15 06:02:26.275 INFO kablam! | help: remove this `mut` Oct 15 06:02:26.275 INFO kablam! Oct 15 06:02:26.275 INFO kablam! warning: variable does not need to be mutable Oct 15 06:02:26.275 INFO kablam! --> src/main.rs:151:9 Oct 15 06:02:26.275 INFO kablam! | Oct 15 06:02:26.275 INFO kablam! 151 | let mut top_cigar:&CigarStringView; Oct 15 06:02:26.275 INFO kablam! | ----^^^^^^^^^ Oct 15 06:02:26.275 INFO kablam! | | Oct 15 06:02:26.275 INFO kablam! | help: remove this `mut` Oct 15 06:02:26.275 INFO kablam! Oct 15 06:02:26.291 INFO kablam! warning: variable does not need to be mutable Oct 15 06:02:26.291 INFO kablam! --> src/main.rs:338:9 Oct 15 06:02:26.291 INFO kablam! | Oct 15 06:02:26.291 INFO kablam! 338 | let mut need_trim:bool; Oct 15 06:02:26.291 INFO kablam! | ----^^^^^^^^^ Oct 15 06:02:26.291 INFO kablam! | | Oct 15 06:02:26.291 INFO kablam! | help: remove this `mut` Oct 15 06:02:26.291 INFO kablam! Oct 15 06:02:26.291 INFO kablam! warning: variable does not need to be mutable Oct 15 06:02:26.291 INFO kablam! --> src/main.rs:355:9 Oct 15 06:02:26.291 INFO kablam! | Oct 15 06:02:26.291 INFO kablam! 355 | let mut chrom = 0; Oct 15 06:02:26.291 INFO kablam! | ----^^^^^ Oct 15 06:02:26.291 INFO kablam! | | Oct 15 06:02:26.291 INFO kablam! | help: remove this `mut` Oct 15 06:02:26.291 INFO kablam! Oct 15 06:02:26.303 INFO kablam! warning: function `bamLineParse` should have a snake case name such as `bam_line_parse` Oct 15 06:02:26.303 INFO kablam! --> src/main.rs:68:1 Oct 15 06:02:26.303 INFO kablam! | Oct 15 06:02:26.303 INFO kablam! 68 | / fn bamLineParse(record:&Record) -> (String, String, String, i32, i32){ Oct 15 06:02:26.303 INFO kablam! 69 | | Oct 15 06:02:26.303 INFO kablam! 70 | | let qname_str = String::from_utf8_lossy(record.qname()).to_string(); Oct 15 06:02:26.303 INFO kablam! 71 | | let temp_v:Vec<&str> = qname_str.split('#').collect(); Oct 15 06:02:26.303 INFO kablam! ... | Oct 15 06:02:26.303 INFO kablam! 97 | | (index, pair.to_string(), strand.to_string(), insert_size.abs(), aln_pos) Oct 15 06:02:26.303 INFO kablam! 98 | | } Oct 15 06:02:26.303 INFO kablam! | |_^ Oct 15 06:02:26.303 INFO kablam! | Oct 15 06:02:26.303 INFO kablam! = note: #[warn(non_snake_case)] on by default Oct 15 06:02:26.303 INFO kablam! Oct 15 06:02:26.303 INFO kablam! warning: variable `baseEach_num_record` should have a snake case name such as `base_each_num_record` Oct 15 06:02:26.303 INFO kablam! --> src/main.rs:147:9 Oct 15 06:02:26.303 INFO kablam! | Oct 15 06:02:26.303 INFO kablam! 147 | let mut baseEach_num_record = String::new(); Oct 15 06:02:26.303 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^ Oct 15 06:02:26.303 INFO kablam! Oct 15 06:02:26.303 INFO kablam! warning: variable `baseEach_percent_record` should have a snake case name such as `base_each_percent_record` Oct 15 06:02:26.303 INFO kablam! --> src/main.rs:148:9 Oct 15 06:02:26.303 INFO kablam! | Oct 15 06:02:26.303 INFO kablam! 148 | let mut baseEach_percent_record = String::new(); Oct 15 06:02:26.303 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ Oct 15 06:02:26.303 INFO kablam! Oct 15 06:02:26.303 INFO kablam! warning: unused `std::result::Result` which must be used Oct 15 06:02:26.303 INFO kablam! --> src/main.rs:267:9 Oct 15 06:02:26.303 INFO kablam! | Oct 15 06:02:26.303 INFO kablam! 267 | o_buff.write(&member_record.2); Oct 15 06:02:26.303 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Oct 15 06:02:26.303 INFO kablam! | Oct 15 06:02:26.303 INFO kablam! = note: #[warn(unused_must_use)] on by default Oct 15 06:02:26.303 INFO kablam! = note: this `Result` may be an `Err` variant, which should be handled Oct 15 06:02:26.303 INFO kablam! Oct 15 06:02:26.303 INFO kablam! warning: unused `std::result::Result` which must be used Oct 15 06:02:26.303 INFO kablam! --> src/main.rs:269:9 Oct 15 06:02:26.303 INFO kablam! | Oct 15 06:02:26.304 INFO kablam! 269 | o_buff.write(&member_record.0); Oct 15 06:02:26.304 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Oct 15 06:02:26.304 INFO kablam! | Oct 15 06:02:26.304 INFO kablam! = note: this `Result` may be an `Err` variant, which should be handled Oct 15 06:02:26.304 INFO kablam! Oct 15 06:02:26.304 INFO kablam! warning: unused `std::result::Result` which must be used Oct 15 06:02:26.304 INFO kablam! --> src/main.rs:272:9 Oct 15 06:02:26.304 INFO kablam! | Oct 15 06:02:26.304 INFO kablam! 272 | o_buff.write(&real_qual_temp); Oct 15 06:02:26.304 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Oct 15 06:02:26.304 INFO kablam! | Oct 15 06:02:26.304 INFO kablam! = note: this `Result` may be an `Err` variant, which should be handled Oct 15 06:02:26.304 INFO kablam! Oct 15 06:02:26.304 INFO kablam! warning: unused `std::result::Result` which must be used Oct 15 06:02:26.304 INFO kablam! --> src/main.rs:274:5 Oct 15 06:02:26.304 INFO kablam! | Oct 15 06:02:26.304 INFO kablam! 274 | o_buff.write(b"\n"); Oct 15 06:02:26.304 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^ Oct 15 06:02:26.304 INFO kablam! | Oct 15 06:02:26.304 INFO kablam! = note: this `Result` may be an `Err` variant, which should be handled Oct 15 06:02:26.304 INFO kablam! Oct 15 06:02:26.304 INFO kablam! warning: unused `std::result::Result` which must be used Oct 15 06:02:26.304 INFO kablam! --> src/main.rs:277:5 Oct 15 06:02:26.304 INFO kablam! | Oct 15 06:02:26.304 INFO kablam! 277 | o_buff.write(b"\n"); Oct 15 06:02:26.304 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^ Oct 15 06:02:26.304 INFO kablam! | Oct 15 06:02:26.304 INFO kablam! = note: this `Result` may be an `Err` variant, which should be handled Oct 15 06:02:26.304 INFO kablam! Oct 15 06:02:26.304 INFO kablam! warning: unused `std::result::Result` which must be used Oct 15 06:02:26.304 INFO kablam! --> src/main.rs:280:5 Oct 15 06:02:26.304 INFO kablam! | Oct 15 06:02:26.304 INFO kablam! 280 | o_buff.write(b"\n"); Oct 15 06:02:26.304 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^ Oct 15 06:02:26.304 INFO kablam! | Oct 15 06:02:26.304 INFO kablam! = note: this `Result` may be an `Err` variant, which should be handled Oct 15 06:02:26.304 INFO kablam! Oct 15 06:02:26.304 INFO kablam! warning: variable `key_dupGroup` should have a snake case name such as `key_dup_group` Oct 15 06:02:26.304 INFO kablam! --> src/main.rs:286:10 Oct 15 06:02:26.304 INFO kablam! | Oct 15 06:02:26.304 INFO kablam! 286 | for (key_dupGroup, pair_dup) in pd.iter() { Oct 15 06:02:26.304 INFO kablam! | ^^^^^^^^^^^^ Oct 15 06:02:26.304 INFO kablam! Oct 15 06:02:26.304 INFO kablam! warning: variable `position_dupGroup` should have a snake case name such as `position_dup_group` Oct 15 06:02:26.304 INFO kablam! --> src/main.rs:357:9 Oct 15 06:02:26.304 INFO kablam! | Oct 15 06:02:26.304 INFO kablam! 357 | let mut position_dupGroup: HashMap, Vec, Vec, CigarStringView, bool)>>> = HashMap::new(); Oct 15 06:02:26.304 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^ Oct 15 06:02:26.304 INFO kablam! Oct 15 06:02:26.304 INFO kablam! warning: variable `key_dupGroup` should have a snake case name such as `key_dup_group` Oct 15 06:02:26.304 INFO kablam! --> src/main.rs:387:17 Oct 15 06:02:26.304 INFO kablam! | Oct 15 06:02:26.304 INFO kablam! 387 | let key_dupGroup = format!("{}_{}_{}_{}{}", index, chrom, aln_pos, strand, insert_size); Oct 15 06:02:26.304 INFO kablam! | ^^^^^^^^^^^^ Oct 15 06:02:26.304 INFO kablam! Oct 15 06:02:26.987 INFO kablam! Finished dev [unoptimized + debuginfo] target(s) in 2.41s Oct 15 06:02:26.992 INFO kablam! su: No module specific data is present Oct 15 06:02:28.397 INFO running `"docker" "rm" "-f" "fb35bb78d4055a2f814d8684cc97db79411ead6b8cf7626c006ab51e07420008"` Oct 15 06:02:28.739 INFO blam! fb35bb78d4055a2f814d8684cc97db79411ead6b8cf7626c006ab51e07420008 Oct 15 06:02:28.739 INFO running `"docker" "create" "-v" "/mnt/big/crater/./work/local/target-dirs/rustdoc-test-static-cling-1/worker-2/try#40d4795669493f1965de7c44029c69552134fe1f:/target:rw,Z" "-v" "/mnt/big/crater/./work/local/test-source/worker-2/rustdoc-test-static-cling-1/try#40d4795669493f1965de7c44029c69552134fe1f:/source:ro,Z" "-v" "/mnt/big/crater/./work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/./work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +40d4795669493f1965de7c44029c69552134fe1f-alt test --frozen" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"` Oct 15 06:02:29.217 INFO blam! 01d4fd8fae823efd0369a0196fba2db422bb907707de9c38eece9fdb752a4d26 Oct 15 06:02:29.219 INFO running `"docker" "start" "-a" "01d4fd8fae823efd0369a0196fba2db422bb907707de9c38eece9fdb752a4d26"` Oct 15 06:02:31.253 INFO kablam! usermod: no changes Oct 15 06:02:31.419 INFO kablam! Finished dev [unoptimized + debuginfo] target(s) in 0.13s Oct 15 06:02:31.433 INFO kablam! Running /target/debug/deps/consensus-f00dbd6d30a1ada7 Oct 15 06:02:31.433 INFO blam! Oct 15 06:02:31.433 INFO blam! running 0 tests Oct 15 06:02:31.433 INFO blam! Oct 15 06:02:31.433 INFO blam! test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out Oct 15 06:02:31.433 INFO blam! Oct 15 06:02:31.439 INFO kablam! su: No module specific data is present Oct 15 06:02:32.575 INFO running `"docker" "rm" "-f" "01d4fd8fae823efd0369a0196fba2db422bb907707de9c38eece9fdb752a4d26"` Oct 15 06:02:32.867 INFO blam! 01d4fd8fae823efd0369a0196fba2db422bb907707de9c38eece9fdb752a4d26