Oct 16 16:57:12.814 INFO testing bio-0.22.0 against master#0e07c4281c343e9e15a0a8fca79538ad1a8eb513 for rustdoc-test-static-cling-1
Oct 16 16:57:12.814 INFO running `"docker" "create" "-v" "/mnt/big/crater/./work/local/target-dirs/rustdoc-test-static-cling-1/worker-3/master#0e07c4281c343e9e15a0a8fca79538ad1a8eb513:/target:rw,Z" "-v" "/mnt/big/crater/./work/local/test-source/worker-3/rustdoc-test-static-cling-1/master#0e07c4281c343e9e15a0a8fca79538ad1a8eb513:/source:ro,Z" "-v" "/mnt/big/crater/./work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/./work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +0e07c4281c343e9e15a0a8fca79538ad1a8eb513-alt build --frozen" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"`
Oct 16 16:57:13.188 INFO blam! 42977a11606dab5fa0d80775fcc5207191d28ac55bff6e48e2f83063f0ed6c40
Oct 16 16:57:13.203 INFO running `"docker" "start" "-a" "42977a11606dab5fa0d80775fcc5207191d28ac55bff6e48e2f83063f0ed6c40"`
Oct 16 16:57:14.482 INFO kablam! usermod: no changes
Oct 16 16:57:14.707 INFO kablam!    Compiling bv v0.7.4
Oct 16 16:57:14.707 INFO kablam!    Compiling vec_map v0.8.1
Oct 16 16:57:14.707 INFO kablam!    Compiling bio-types v0.4.0
Oct 16 16:57:14.707 INFO kablam!    Compiling multimap v0.4.0
Oct 16 16:57:21.499 INFO kablam!    Compiling bio v0.22.0 (/source)
Oct 16 16:57:25.207 INFO kablam! warning: unused `#[macro_use]` import
Oct 16 16:57:25.207 INFO kablam!    --> src/lib.rs:103:1
Oct 16 16:57:25.207 INFO kablam!     |
Oct 16 16:57:25.207 INFO kablam! 103 | #[macro_use]
Oct 16 16:57:25.207 INFO kablam!     | ^^^^^^^^^^^^
Oct 16 16:57:25.207 INFO kablam!     |
Oct 16 16:57:25.207 INFO kablam!     = note: #[warn(unused_imports)] on by default
Oct 16 16:57:25.207 INFO kablam! 
Oct 16 16:57:25.207 INFO kablam! warning: unused `#[macro_use]` import
Oct 16 16:57:25.207 INFO kablam!    --> src/lib.rs:117:1
Oct 16 16:57:25.207 INFO kablam!     |
Oct 16 16:57:25.207 INFO kablam! 117 | #[macro_use]
Oct 16 16:57:25.207 INFO kablam!     | ^^^^^^^^^^^^
Oct 16 16:57:25.207 INFO kablam! 
Oct 16 16:57:33.779 INFO kablam!     Finished dev [unoptimized + debuginfo] target(s) in 19.26s
Oct 16 16:57:33.792 INFO kablam! su: No module specific data is present
Oct 16 16:57:34.363 INFO running `"docker" "rm" "-f" "42977a11606dab5fa0d80775fcc5207191d28ac55bff6e48e2f83063f0ed6c40"`
Oct 16 16:57:34.539 INFO blam! 42977a11606dab5fa0d80775fcc5207191d28ac55bff6e48e2f83063f0ed6c40
Oct 16 16:57:34.547 INFO running `"docker" "create" "-v" "/mnt/big/crater/./work/local/target-dirs/rustdoc-test-static-cling-1/worker-3/master#0e07c4281c343e9e15a0a8fca79538ad1a8eb513:/target:rw,Z" "-v" "/mnt/big/crater/./work/local/test-source/worker-3/rustdoc-test-static-cling-1/master#0e07c4281c343e9e15a0a8fca79538ad1a8eb513:/source:ro,Z" "-v" "/mnt/big/crater/./work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/./work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +0e07c4281c343e9e15a0a8fca79538ad1a8eb513-alt test --frozen --no-run" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"`
Oct 16 16:57:34.882 INFO blam! bf3735b36a51abc8109834ba3a9b84ec78f8331bf30498d8aa341f51dc3892b7
Oct 16 16:57:34.888 INFO running `"docker" "start" "-a" "bf3735b36a51abc8109834ba3a9b84ec78f8331bf30498d8aa341f51dc3892b7"`
Oct 16 16:57:35.924 INFO kablam! usermod: no changes
Oct 16 16:57:36.051 INFO kablam!    Compiling bio v0.22.0 (/source)
Oct 16 16:58:01.142 INFO kablam!     Finished dev [unoptimized + debuginfo] target(s) in 25.20s
Oct 16 16:58:01.159 INFO kablam! su: No module specific data is present
Oct 16 16:58:01.664 INFO running `"docker" "rm" "-f" "bf3735b36a51abc8109834ba3a9b84ec78f8331bf30498d8aa341f51dc3892b7"`
Oct 16 16:58:01.884 INFO blam! bf3735b36a51abc8109834ba3a9b84ec78f8331bf30498d8aa341f51dc3892b7
Oct 16 16:58:01.889 INFO running `"docker" "create" "-v" "/mnt/big/crater/./work/local/target-dirs/rustdoc-test-static-cling-1/worker-3/master#0e07c4281c343e9e15a0a8fca79538ad1a8eb513:/target:rw,Z" "-v" "/mnt/big/crater/./work/local/test-source/worker-3/rustdoc-test-static-cling-1/master#0e07c4281c343e9e15a0a8fca79538ad1a8eb513:/source:ro,Z" "-v" "/mnt/big/crater/./work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/./work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +0e07c4281c343e9e15a0a8fca79538ad1a8eb513-alt test --frozen" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"`
Oct 16 16:58:02.263 INFO blam! b1d982fb14fcc3176da65b9e827ddaf2dcc31873182b9acb5b74fb6f334bdaa0
Oct 16 16:58:02.275 INFO running `"docker" "start" "-a" "b1d982fb14fcc3176da65b9e827ddaf2dcc31873182b9acb5b74fb6f334bdaa0"`
Oct 16 16:58:03.095 INFO kablam! usermod: no changes
Oct 16 16:58:03.238 INFO kablam!     Finished dev [unoptimized + debuginfo] target(s) in 0.12s
Oct 16 16:58:03.254 INFO kablam!      Running /target/debug/deps/bio-e3b98d1df04a10b0
Oct 16 16:58:03.259 INFO blam! 
Oct 16 16:58:03.259 INFO blam! running 227 tests
Oct 16 16:58:03.275 INFO blam! test alignment::distance::tests::test_levenshtein_dist ... ok
Oct 16 16:58:03.275 INFO blam! test alignment::distance::tests::test_hamming_dist_good ... ok
Oct 16 16:58:03.275 INFO blam! test alignment::pairwise::banded::banded::test_band_add_kmer ... ok
Oct 16 16:58:03.319 INFO blam! test alignment::pairwise::banded::banded::test_band_ends_inside ... ok
Oct 16 16:58:03.336 INFO blam! test alignment::pairwise::banded::banded::test_blosum62 ... ok
Oct 16 16:58:03.355 INFO blam! test alignment::pairwise::banded::banded::test_band_add_entry ... ok
Oct 16 16:58:03.355 INFO blam! test alignment::pairwise::banded::banded::test_aligner_new ... ok
Oct 16 16:58:03.367 INFO blam! test alignment::pairwise::banded::banded::test_deletion ... ok
Oct 16 16:58:03.367 INFO blam! test alignment::pairwise::banded::banded::test_global ... ok
Oct 16 16:58:03.375 INFO blam! test alignment::pairwise::banded::banded::test_insert_in_between_semiglobal ... ok
Oct 16 16:58:03.375 INFO blam! test alignment::pairwise::banded::banded::test_global_right_del ... ok
Oct 16 16:58:03.375 INFO blam! test alignment::pairwise::banded::banded::test_insert_only_semiglobal ... ok
Oct 16 16:58:03.375 INFO blam! test alignment::pairwise::banded::banded::test_global_affine_ins ... ok
Oct 16 16:58:03.379 INFO blam! test alignment::pairwise::banded::banded::test_global_affine_ins2 ... ok
Oct 16 16:58:03.395 INFO blam! test alignment::pairwise::banded::banded::test_issue12_2 ... ok
Oct 16 16:58:03.395 INFO blam! test alignment::pairwise::banded::banded::test_band_starts_inside ... ok
Oct 16 16:58:03.415 INFO blam! test alignment::pairwise::banded::banded::test_issue12_3 ... ok
Oct 16 16:58:03.415 INFO blam! test alignment::pairwise::banded::banded::test_left_aligned_del ... ok
Oct 16 16:58:03.415 INFO blam! test alignment::pairwise::banded::banded::test_issue11 ... ok
Oct 16 16:58:03.415 INFO blam! test alignment::pairwise::banded::banded::test_issue12_1 ... ok
Oct 16 16:58:03.431 INFO blam! test alignment::pairwise::banded::banded::test_left_aligned_ins ... ok
Oct 16 16:58:03.431 INFO blam! test alignment::pairwise::banded::banded::test_local ... ok
Oct 16 16:58:03.432 INFO blam! test alignment::pairwise::banded::banded::test_local_affine_ins2 ... ok
Oct 16 16:58:03.432 INFO blam! test alignment::pairwise::banded::banded::test_insertion ... ok
Oct 16 16:58:03.432 INFO blam! test alignment::pairwise::banded::banded::test_longer_string_all_operations ... ok
Oct 16 16:58:03.457 INFO blam! test alignment::pairwise::banded::banded::test_local_empty ... ok
Oct 16 16:58:03.459 INFO blam! test alignment::pairwise::banded::banded::test_band_is_fully_inside ... ok
Oct 16 16:58:03.471 INFO blam! test alignment::distance::tests::test_hamming_dist_bad ... ok
Oct 16 16:58:03.471 INFO blam! test alignment::pairwise::banded::banded::test_semiglobal ... ok
Oct 16 16:58:03.472 INFO blam! test alignment::pairwise::banded::banded::test_overhangs4 ... ok
Oct 16 16:58:03.478 INFO blam! test alignment::pairwise::banded::banded::test_semiglobal_gap_open_lt_mismatch ... ok
Oct 16 16:58:03.478 INFO blam! test alignment::pairwise::banded::banded::test_overhangs1 ... ok
Oct 16 16:58:03.486 INFO blam! test alignment::pairwise::banded::banded::test_semiglobal_simple ... ok
Oct 16 16:58:03.486 INFO blam! test alignment::pairwise::banded::banded::test_xclip_prefix_custom ... ok
Oct 16 16:58:03.486 INFO blam! test alignment::pairwise::banded::banded::test_yclip_prefix_custom ... ok
Oct 16 16:58:03.486 INFO blam! test alignment::pairwise::banded::banded::test_xclip_suffix_custom ... ok
Oct 16 16:58:03.488 INFO blam! test alignment::pairwise::banded::banded::test_yclip_suffix_custom ... ok
Oct 16 16:58:03.488 INFO blam! test alignment::pairwise::tests::test_aligner_new ... ok
Oct 16 16:58:03.495 INFO blam! test alignment::pairwise::tests::test_blosum62 ... ok
Oct 16 16:58:03.495 INFO blam! test alignment::pairwise::tests::test_global ... ok
Oct 16 16:58:03.499 INFO blam! test alignment::pairwise::tests::test_global_affine_ins ... ok
Oct 16 16:58:03.499 INFO blam! test alignment::pairwise::tests::test_global_affine_ins2 ... ok
Oct 16 16:58:03.499 INFO blam! test alignment::pairwise::tests::test_global_right_del ... ok
Oct 16 16:58:03.507 INFO blam! test alignment::pairwise::tests::test_insert_in_between_semiglobal ... ok
Oct 16 16:58:03.507 INFO blam! test alignment::pairwise::tests::test_insert_only_semiglobal ... ok
Oct 16 16:58:03.507 INFO blam! test alignment::pairwise::tests::test_issue12_1 ... ok
Oct 16 16:58:03.507 INFO blam! test alignment::pairwise::tests::test_issue12_2 ... ok
Oct 16 16:58:03.507 INFO blam! test alignment::pairwise::tests::test_issue12_3 ... ok
Oct 16 16:58:03.507 INFO blam! test alignment::pairwise::tests::test_left_aligned_del ... ok
Oct 16 16:58:03.507 INFO blam! test alignment::pairwise::tests::test_left_aligned_ins ... ok
Oct 16 16:58:03.507 INFO blam! test alignment::pairwise::tests::test_local ... ok
Oct 16 16:58:03.525 INFO blam! test alignment::pairwise::tests::test_local_affine_ins2 ... ok
Oct 16 16:58:03.525 INFO blam! test alignment::pairwise::banded::banded::test_substitutions ... ok
Oct 16 16:58:03.525 INFO blam! test alignment::pairwise::tests::test_issue11 ... ok
Oct 16 16:58:03.525 INFO blam! test alignment::pairwise::banded::banded::test_overhangs5 ... ok
Oct 16 16:58:03.525 INFO blam! test alignment::pairwise::banded::banded::test_overhangs3 ... ok
Oct 16 16:58:03.525 INFO blam! test alignment::pairwise::tests::test_longer_string_all_operations ... ok
Oct 16 16:58:03.525 INFO blam! test alignment::pairwise::tests::test_xclip_prefix_custom ... ok
Oct 16 16:58:03.525 INFO blam! test alignment::pairwise::tests::test_xclip_suffix_custom ... ok
Oct 16 16:58:03.525 INFO blam! test alignment::pairwise::tests::test_yclip_prefix_custom ... ok
Oct 16 16:58:03.525 INFO blam! test alignment::pairwise::tests::test_yclip_suffix_custom ... ok
Oct 16 16:58:03.528 INFO blam! test alignment::pairwise::tests::test_semiglobal_gap_open_lt_mismatch ... ok
Oct 16 16:58:03.528 INFO blam! test alignment::pairwise::tests::test_semiglobal_simple ... ok
Oct 16 16:58:03.528 INFO blam! test alignment::pairwise::tests::traceback_cell ... ok
Oct 16 16:58:03.528 INFO blam! test alignment::pairwise::banded::banded::test_overhangs2 ... ok
Oct 16 16:58:03.528 INFO blam! test alignment::pairwise::tests::test_scoring_from_scores ... ok
Oct 16 16:58:03.528 INFO blam! test alignment::sparse::sparse_alignment::test_lcskpp1 ... ok
Oct 16 16:58:03.528 INFO blam! test alignment::sparse::sparse_alignment::test_lcskpp_same ... ok
Oct 16 16:58:03.528 INFO blam! test alignment::sparse::sparse_alignment::test_lcskpp2 ... ok
Oct 16 16:58:03.528 INFO blam! test alignment::sparse::sparse_alignment::test_expanded_matches ... ok
Oct 16 16:58:03.532 INFO blam! test alignment::sparse::sparse_alignment::test_find_kmer_matches ... ok
Oct 16 16:58:03.532 INFO blam! test alignment::sparse::sparse_alignment::test_lcskpp0 ... ok
Oct 16 16:58:03.533 INFO blam! test alignment::sparse::sparse_alignment::test_sdpkpp_same ... ok
Oct 16 16:58:03.534 INFO blam! test alignment::sparse::sparse_alignment::test_sdp2 ... ok
Oct 16 16:58:03.537 INFO blam! test alignment::sparse::sparse_alignment::test_sdp ... ok
Oct 16 16:58:03.538 INFO blam! test alignment::sparse::sparse_alignment::test_sdp1 ... ok
Oct 16 16:58:03.538 INFO blam! test alignment::sparse::sparse_alignment::test_lcskpp_tandem_repeat ... ok
Oct 16 16:58:03.538 INFO blam! test alphabets::protein::tests::symbol_is_no_word ... ok
Oct 16 16:58:03.538 INFO blam! test alphabets::rna::tests::is_no_word ... ok
Oct 16 16:58:03.538 INFO blam! test alphabets::rna::tests::is_word ... ok
Oct 16 16:58:03.538 INFO blam! test alphabets::rna::tests::number_is_no_word ... ok
Oct 16 16:58:03.538 INFO blam! test alphabets::rna::tests::symbol_is_no_word ... ok
Oct 16 16:58:03.538 INFO blam! test alphabets::rna::tests::test_reverse_complement ... ok
Oct 16 16:58:03.538 INFO blam! test alphabets::protein::tests::is_no_word ... ok
Oct 16 16:58:03.538 INFO blam! test data_structures::bitenc::tests::test_bitenc ... ok
Oct 16 16:58:03.538 INFO blam! test data_structures::bit_tree::test_bit_tree::test_bit_tree ... ok
Oct 16 16:58:03.541 INFO blam! test alphabets::protein::tests::is_word ... ok
Oct 16 16:58:03.541 INFO blam! test alphabets::protein::tests::number_is_no_word ... ok
Oct 16 16:58:03.551 INFO blam! test data_structures::bitenc::tests::test_push_values ... ok
Oct 16 16:58:03.551 INFO blam! test data_structures::bwt::tests::test_bwtfind ... ok
Oct 16 16:58:03.551 INFO blam! test data_structures::bwt::tests::test_invert_bwt ... ok
Oct 16 16:58:03.551 INFO blam! test alignment::pairwise::tests::test_semiglobal ... ok
Oct 16 16:58:03.559 INFO blam! test data_structures::bwt::tests::test_occ ... ok
Oct 16 16:58:03.559 INFO blam! test data_structures::fmindex::tests::test_init_interval ... ok
Oct 16 16:58:03.567 INFO blam! test alignment::sparse::sparse_alignment::test_sdpkpp_tandem_repeat ... ok
Oct 16 16:58:03.583 INFO blam! test data_structures::bitenc::tests::test_issue29 ... ok
Oct 16 16:58:03.583 INFO blam! test data_structures::fmindex::tests::test_smems ... ok
Oct 16 16:58:03.583 INFO blam! test alignment::pairwise::banded::banded::test_same ... ok
Oct 16 16:58:03.583 INFO blam! test data_structures::fmindex::tests::test_fmindex ... ok
Oct 16 16:58:03.592 INFO blam! test data_structures::interval_tree::tests::iter_mut ... ok
Oct 16 16:58:03.592 INFO blam! test data_structures::interval_tree::tests::from_iterator ... ok
Oct 16 16:58:03.593 INFO blam! test data_structures::interval_tree::tests::zero_width_ranges ... ok
Oct 16 16:58:03.596 INFO blam! test data_structures::interval_tree::tests::test_insertion_and_intersection ... ok
Oct 16 16:58:03.599 INFO blam! test data_structures::rank_select::tests::test_rank_select ... ok
Oct 16 16:58:03.603 INFO blam! test data_structures::qgram_index::tests::test_qgram_matches ... ok
Oct 16 16:58:03.603 INFO blam! test data_structures::qgram_index::tests::test_exact_matches_self ... ok
Oct 16 16:58:03.624 INFO blam! test data_structures::qgram_index::tests::test_matches ... ok
Oct 16 16:58:03.624 INFO blam! test data_structures::rank_select::tests::test_select ... ok
Oct 16 16:58:03.639 INFO blam! test data_structures::suffix_array::tests::test_issue10_1 ... ok
Oct 16 16:58:03.639 INFO blam! test data_structures::suffix_array::tests::test_handles_sentinels_properly ... ok
Oct 16 16:58:03.647 INFO blam! test data_structures::rank_select::tests::test_single_select ... ok
Oct 16 16:58:03.647 INFO blam! test data_structures::suffix_array::tests::test_buckets ... ok
Oct 16 16:58:03.647 INFO blam! test data_structures::suffix_array::tests::test_pos_types ... ok
Oct 16 16:58:03.647 INFO blam! test data_structures::suffix_array::tests::test_issue10_2 ... ok
Oct 16 16:58:03.647 INFO blam! test data_structures::suffix_array::tests::test_pos ... ok
Oct 16 16:58:03.647 INFO blam! test data_structures::qgram_index::tests::test_exact_matches ... ok
Oct 16 16:58:03.664 INFO blam! test data_structures::suffix_array::tests::test_lms_pos ... ok
Oct 16 16:58:03.671 INFO blam! test io::bed::tests::test_reader ... ok
Oct 16 16:58:03.683 INFO blam! test io::bed::tests::test_writer ... ok
Oct 16 16:58:03.695 INFO blam! test io::fasta::tests::test_index_sequences ... ok
Oct 16 16:58:03.695 INFO blam! test data_structures::fmindex::tests::test_issue39 ... ok
Oct 16 16:58:03.703 INFO blam! test io::fasta::tests::test_indexed_reader_bad_reader ... ok
Oct 16 16:58:03.708 INFO blam! test io::fasta::tests::test_indexed_reader_crlf ... ok
Oct 16 16:58:03.708 INFO blam! test io::fasta::tests::test_indexed_reader_all ... ok
Oct 16 16:58:03.719 INFO blam! test io::fasta::tests::test_indexed_reader_by_rid_all ... ok
Oct 16 16:58:03.719 INFO blam! test io::fasta::tests::test_indexed_reader_crlf_all ... ok
Oct 16 16:58:03.719 INFO blam! test io::fasta::tests::test_indexed_reader_crlf_by_rid_all ... ok
Oct 16 16:58:03.719 INFO blam! test io::fasta::tests::test_indexed_reader ... ok
Oct 16 16:58:03.719 INFO blam! test io::fasta::tests::test_indexed_reader_iter_crlf_all ... ok
Oct 16 16:58:03.725 INFO blam! test io::fasta::tests::test_indexed_reader_iter_by_rid_all ... ok
Oct 16 16:58:03.730 INFO blam! test io::fasta::tests::test_indexed_reader_iter ... ok
Oct 16 16:58:03.730 INFO blam! test io::fasta::tests::test_indexed_reader_iter_all ... ok
Oct 16 16:58:03.730 INFO blam! test io::fasta::tests::test_indexed_reader_iter_crlf_by_rid_all ... ok
Oct 16 16:58:03.730 INFO blam! test io::fasta::tests::test_indexed_reader_iter_crlf ... ok
Oct 16 16:58:03.730 INFO blam! test io::fasta::tests::test_indexed_reader_iter_seek_fails ... ok
Oct 16 16:58:03.730 INFO blam! test io::fasta::tests::test_indexed_reader_iter_read_fails ... ok
Oct 16 16:58:03.732 INFO blam! test io::fasta::tests::test_indexed_reader_iter_size_hint ... ok
Oct 16 16:58:03.732 INFO blam! test io::fasta::tests::test_indexed_reader_read_read_fails ... ok
Oct 16 16:58:03.732 INFO blam! test io::fasta::tests::test_indexed_reader_no_trailing_lf ... ok
Oct 16 16:58:03.732 INFO blam! test io::fasta::tests::test_indexed_reader_no_fetch_read_iter_fails ... ok
Oct 16 16:58:03.732 INFO blam! test io::fasta::tests::test_indexed_reader_no_fetch_read_fails ... ok
Oct 16 16:58:03.739 INFO blam! test alignment::pairwise::banded::banded::test_big ... ok
Oct 16 16:58:03.739 INFO blam! test io::fasta::tests::test_indexed_reader_read_seek_fails ... ok
Oct 16 16:58:03.739 INFO blam! test data_structures::suffix_array::tests::test_sorts_lexically ... ok
Oct 16 16:58:03.746 INFO blam! test io::fasta::tests::test_reader_no_id ... ok
Oct 16 16:58:03.747 INFO blam! test io::fasta::tests::test_indexed_reader_reused_buffer ... ok
Oct 16 16:58:03.747 INFO blam! test io::fasta::tests::test_reader_non_ascii_sequence ... ok
Oct 16 16:58:03.747 INFO blam! test io::fasta::tests::test_reader ... ok
Oct 16 16:58:03.747 INFO blam! test io::fasta::tests::test_reader_read_fails ... ok
Oct 16 16:58:03.754 INFO blam! test io::fasta::tests::test_record_with_attrs ... ok
Oct 16 16:58:03.755 INFO blam! test io::fasta::tests::test_writer ... ok
Oct 16 16:58:03.755 INFO blam! test io::fasta::tests::test_reader_wrong_header ... ok
Oct 16 16:58:03.755 INFO blam! test io::fastq::tests::test_record_with_attrs ... ok
Oct 16 16:58:03.755 INFO blam! test data_structures::interval_tree::tests::test_insertion_and_intersection_2 ... ok
Oct 16 16:58:03.755 INFO blam! test io::fastq::tests::test_writer ... ok
Oct 16 16:58:03.755 INFO blam! test io::fastq::tests::test_reader ... ok
Oct 16 16:58:03.767 INFO blam! test io::fasta::tests::test_reader_read_fails_iter ... ok
Oct 16 16:58:03.775 INFO blam! test pattern_matching::bndm::tests::test_find_all ... ok
Oct 16 16:58:03.775 INFO blam! test io::gff::tests::test_convert_gtf2_to_gff3 ... ok
Oct 16 16:58:03.779 INFO blam! test io::gff::tests::test_writer_gff3 ... ok
Oct 16 16:58:03.779 INFO blam! test io::gff::tests::test_reader_gtf2_2 ... ok
Oct 16 16:58:03.780 INFO blam! test pattern_matching::horspool::tests::test_find_all ... ok
Oct 16 16:58:03.784 INFO blam! test io::gff::tests::test_reader_gff3 ... ok
Oct 16 16:58:03.784 INFO blam! test pattern_matching::horspool::tests::test_shift ... ok
Oct 16 16:58:03.789 INFO blam! test io::gff::tests::test_reader_gtf2_dup_attr_keys ... ok
Oct 16 16:58:03.789 INFO blam! test pattern_matching::kmp::tests::test_find_all ... ok
Oct 16 16:58:03.790 INFO blam! test pattern_matching::kmp::tests::test_find_all_at_start ... ok
Oct 16 16:58:03.791 INFO blam! test io::gff::tests::test_reader_gtf2 ... ok
Oct 16 16:58:03.793 INFO blam! test pattern_matching::kmp::tests::test_delta ... ok
Oct 16 16:58:03.793 INFO blam! test pattern_matching::myers::tests::test_distance ... ok
Oct 16 16:58:03.793 INFO blam! test pattern_matching::kmp::tests::test_lps ... ok
Oct 16 16:58:03.795 INFO blam! test pattern_matching::myers::tests::test_find_all_end ... ok
Oct 16 16:58:03.796 INFO blam! test pattern_matching::myers::tests::test_long ... ok
Oct 16 16:58:03.803 INFO blam! test pattern_matching::pssm::dnamotif::tests::test_info_content ... ok
Oct 16 16:58:03.803 INFO blam! test pattern_matching::pssm::dnamotif::tests::simple_pssm ... ok
Oct 16 16:58:03.803 INFO blam! test pattern_matching::pssm::dnamotif::tests::test_inconsist_err ... ok
Oct 16 16:58:03.803 INFO blam! test pattern_matching::pssm::dnamotif::tests::find_motif ... ok
Oct 16 16:58:03.816 INFO blam! test pattern_matching::pssm::protmotif::tests::test_inconsist_err ... ok
Oct 16 16:58:03.816 INFO blam! test pattern_matching::shift_and::tests::test_find_all ... ok
Oct 16 16:58:03.816 INFO blam! test pattern_matching::pssm::protmotif::tests::test_info_content ... ok
Oct 16 16:58:03.816 INFO blam! test pattern_matching::pssm::protmotif::tests::test_scoring ... ok
Oct 16 16:58:03.816 INFO blam! test pattern_matching::pssm::protmotif::tests::test_mono_err ... ok
Oct 16 16:58:03.816 INFO blam! test pattern_matching::pssm::dnamotif::tests::test_mono_err ... ok
Oct 16 16:58:03.816 INFO blam! test pattern_matching::ukkonen::tests::test_find_start ... ok
Oct 16 16:58:03.825 INFO blam! test pattern_matching::ukkonen::tests::test_find_all_end ... ok
Oct 16 16:58:03.825 INFO blam! test scores::blosum62::tests::test_blosum62 ... ok
Oct 16 16:58:03.825 INFO blam! test scores::pam120::tests::test_pam120 ... ok
Oct 16 16:58:03.831 INFO blam! test seq_analysis::orf::tests::test_orf ... ok
Oct 16 16:58:03.831 INFO blam! test scores::pam40::tests::test_pam40 ... ok
Oct 16 16:58:03.831 INFO blam! test scores::pam200::tests::test_pam200 ... ok
Oct 16 16:58:03.831 INFO blam! test io::gff::tests::test_writer_gtf2 ... ok
Oct 16 16:58:03.832 INFO blam! test pattern_matching::bom::tests::test_delta ... ok
Oct 16 16:58:03.832 INFO blam! test scores::pam250::tests::test_pam250 ... ok
Oct 16 16:58:03.833 INFO blam! test stats::combinatorics::tests::test_comb ... ok
Oct 16 16:58:03.833 INFO blam! test stats::combinatorics::tests::test_comb_scaled ... ok
Oct 16 16:58:03.833 INFO blam! test pattern_matching::bom::tests::test_find_all ... ok
Oct 16 16:58:03.833 INFO blam! test stats::hmm::tests::test_discrete_backward_toy_example ... ok
Oct 16 16:58:03.833 INFO blam! test stats::bayesian::tests::test_expected_fdr ... ok
Oct 16 16:58:03.834 INFO blam! test stats::pairhmm::tests::test_deletion ... ok
Oct 16 16:58:03.835 INFO blam! test stats::hmm::tests::test_discrete_forward_toy_example ... ok
Oct 16 16:58:03.835 INFO blam! test stats::pairhmm::tests::test_insertion ... ok
Oct 16 16:58:03.835 INFO blam! test stats::hmm::tests::test_gaussian_backward_simple_example ... ok
Oct 16 16:58:03.851 INFO blam! test stats::hmm::tests::test_gaussian_forward_simple_example ... ok
Oct 16 16:58:03.851 INFO blam! test stats::hmm::tests::test_gaussian_viterbi_simple_example ... ok
Oct 16 16:58:03.851 INFO blam! test stats::hmm::tests::test_gaussian_forward_equals_backward_simple_example ... ok
Oct 16 16:58:03.851 INFO blam! test stats::hmm::tests::test_discrete_viterbi_toy_example ... ok
Oct 16 16:58:03.851 INFO blam! test stats::pairhmm::tests::test_mismatch ... ok
Oct 16 16:58:03.851 INFO blam! test stats::pairhmm::tests::test_same ... ok
Oct 16 16:58:03.851 INFO blam! test stats::probs::cdf::test::test_cdf ... ok
Oct 16 16:58:03.851 INFO blam! test stats::probs::tests::test_simpsons_integrate ... ok
Oct 16 16:58:03.851 INFO blam! test stats::probs::tests::test_empty_sum ... ok
Oct 16 16:58:03.851 INFO blam! test stats::probs::tests::test_one_minus ... ok
Oct 16 16:58:03.851 INFO blam! test stats::probs::tests::test_cap_numerical_overshoot ... ok
Oct 16 16:58:03.851 INFO blam! test stats::probs::tests::test_cumsum ... ok
Oct 16 16:58:03.859 INFO blam! test stats::probs::tests::test_sub ... ok
Oct 16 16:58:03.859 INFO blam! test stats::probs::tests::test_sum ... ok
Oct 16 16:58:03.859 INFO blam! test stats::probs::tests::test_sum_one_zero ... ok
Oct 16 16:58:03.859 INFO blam! test utils::tests::test_prescan ... ok
Oct 16 16:58:03.859 INFO blam! test utils::interval::tests::range_interval_conversions ... ok
Oct 16 16:58:03.859 INFO blam! test utils::tests::test_scan ... ok
Oct 16 16:58:03.859 INFO blam! test utils::tests::test_strand ... ok
Oct 16 16:58:03.859 INFO blam! test utils::text::tests::test_print_sequence ... ok
Oct 16 16:58:03.859 INFO blam! test stats::probs::tests::test_trapezoidal_integrate ... ok
Oct 16 16:58:03.860 INFO blam! test stats::probs::tests::test_cap_numerical_overshoot_panic ... ok
Oct 16 16:58:03.875 INFO blam! test stats::probs::tests::test_zero ... ok
Oct 16 16:58:03.875 INFO blam! test utils::interval::tests::negative_width_range ... ok
Oct 16 16:58:03.962 INFO blam! test stats::hmm::tests::test_discrete_forward_equals_backward_toy_example ... ok
Oct 16 16:58:03.962 INFO kablam!    Doc-tests bio
Oct 16 16:58:03.962 INFO blam! 
Oct 16 16:58:03.962 INFO blam! test result: ok. 227 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
Oct 16 16:58:03.962 INFO blam! 
Oct 16 16:58:10.019 INFO blam! 
Oct 16 16:58:10.019 INFO blam! running 42 tests
Oct 16 16:58:55.795 INFO blam! test src/alignment/pairwise/banded.rs - alignment::pairwise::banded (line 20) ... ok
Oct 16 16:58:57.791 INFO blam! test src/alignment/distance.rs - alignment::distance::levenshtein (line 48) ... ok
Oct 16 16:59:02.323 INFO blam! test src/alignment/pairwise/mod.rs - alignment::pairwise (line 13) ... ok
Oct 16 16:59:03.279 INFO blam! test <::custom_derive::custom_derive macros> - stats::probs::PHREDProb (line 46) ... ok
Oct 16 16:59:03.667 INFO blam! test src/alignment/sparse.rs - alignment::sparse (line 18) ... ok
Oct 16 16:59:04.291 INFO blam! test <::custom_derive::custom_derive macros> - stats::probs::Prob (line 46) ... ok
Oct 16 16:59:04.299 INFO blam! test <::custom_derive::custom_derive macros> - stats::probs::LogProb (line 46) ... ok
Oct 16 16:59:04.343 INFO blam! test src/alignment/distance.rs - alignment::distance::hamming (line 16) ... ok
Oct 16 16:59:40.500 INFO blam! test src/alphabets/mod.rs - alphabets (line 10) ... ok
Oct 16 16:59:40.679 INFO blam! test src/alphabets/dna.rs - alphabets::dna (line 10) ... ok
Oct 16 16:59:46.547 INFO blam! test src/alphabets/rna.rs - alphabets::rna (line 10) ... ok
Oct 16 16:59:47.079 INFO blam! test src/data_structures/bit_tree.rs - data_structures::bit_tree (line 12) ... ok
Oct 16 16:59:47.283 INFO blam! test src/alphabets/protein.rs - alphabets::protein (line 10) ... ok
Oct 16 16:59:47.317 INFO blam! test src/data_structures/bitenc.rs - data_structures::bitenc (line 11) ... ok
Oct 16 16:59:49.929 INFO blam! test src/data_structures/bwt.rs - data_structures::bwt::bwt (line 42) ... ok
Oct 16 16:59:51.575 INFO blam! test src/data_structures/fmindex.rs - data_structures::fmindex (line 12) ... ok
Oct 16 17:00:16.602 INFO blam! test src/data_structures/fmindex.rs - data_structures::fmindex (line 34) ... ok
Oct 16 17:00:23.562 INFO blam! test src/data_structures/fmindex.rs - data_structures::fmindex::FMDIndex<DBWT, DLess, DOcc>::smems (line 266) ... ok
Oct 16 17:00:24.335 INFO blam! test src/data_structures/fmindex.rs - data_structures::fmindex::FMIndexable::backward_search (line 98) ... ok
Oct 16 17:00:28.743 INFO blam! test src/data_structures/qgram_index.rs - data_structures::qgram_index (line 10) ... ok
Oct 16 17:00:29.399 INFO blam! test src/data_structures/rank_select.rs - data_structures::rank_select (line 11) ... ok
Oct 16 17:00:30.343 INFO blam! test src/data_structures/interval_tree.rs - data_structures::interval_tree (line 14) ... ok
Oct 16 17:00:30.482 INFO blam! test src/data_structures/suffix_array.rs - data_structures::suffix_array::lcp (line 239) ... ok
Oct 16 17:00:31.574 INFO blam! test src/data_structures/smallints.rs - data_structures::smallints (line 13) ... ok
Oct 16 17:00:49.983 INFO blam! test src/data_structures/suffix_array.rs - data_structures::suffix_array::shortest_unique_substrings (line 304) ... ok
Oct 16 17:00:57.923 INFO blam! test src/data_structures/suffix_array.rs - data_structures::suffix_array::suffix_array (line 198) ... ok
Oct 16 17:01:00.987 INFO blam! test src/io/bed.rs - io::bed (line 10) ... ok
Oct 16 17:01:01.686 INFO blam! test src/io/gff.rs - io::gff (line 14) ... ok
Oct 16 17:01:04.935 INFO blam! test src/io/fastq.rs - io::fastq (line 10) ... ok
Oct 16 17:01:05.471 INFO blam! test src/io/fasta.rs - io::fasta (line 10) ... ok
Oct 16 17:01:07.654 INFO blam! test src/lib.rs -  (line 31) ... ok
Oct 16 17:01:08.833 INFO blam! test src/lib.rs -  (line 54) ... ok
Oct 16 17:01:26.755 INFO blam! test src/pattern_matching/bndm.rs - pattern_matching::bndm (line 12) ... ok
Oct 16 17:01:32.306 INFO blam! test src/pattern_matching/bom.rs - pattern_matching::bom (line 12) ... ok
Oct 16 17:01:34.730 INFO blam! test src/pattern_matching/kmp.rs - pattern_matching::kmp (line 16) ... ok
Oct 16 17:01:36.639 INFO blam! test src/pattern_matching/horspool.rs - pattern_matching::horspool (line 32) ... ok
Oct 16 17:01:37.757 INFO blam! test src/pattern_matching/ukkonen.rs - pattern_matching::ukkonen (line 17) ... ok
Oct 16 17:01:40.170 INFO blam! test src/pattern_matching/shift_and.rs - pattern_matching::shift_and (line 12) ... ok
Oct 16 17:01:43.203 INFO blam! test src/pattern_matching/myers.rs - pattern_matching::myers (line 13) ... ok
Oct 16 17:01:44.539 INFO blam! test src/seq_analysis/orf.rs - seq_analysis::orf (line 12) ... ok
Oct 16 17:01:50.372 INFO blam! test src/stats/hmm.rs - stats::hmm (line 15) ... ok
Oct 16 17:01:52.104 INFO blam! test src/stats/hmm.rs - stats::hmm (line 37) ... ok
Oct 16 17:01:52.104 INFO blam! 
Oct 16 17:01:52.105 INFO blam! test result: ok. 42 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
Oct 16 17:01:52.105 INFO blam! 
Oct 16 17:01:52.155 INFO kablam! su: No module specific data is present
Oct 16 17:01:53.176 INFO running `"docker" "rm" "-f" "b1d982fb14fcc3176da65b9e827ddaf2dcc31873182b9acb5b74fb6f334bdaa0"`
Oct 16 17:01:53.506 INFO blam! b1d982fb14fcc3176da65b9e827ddaf2dcc31873182b9acb5b74fb6f334bdaa0