Oct 15 06:01:38.473 INFO testing TuBieJun/consensus against master#0e07c4281c343e9e15a0a8fca79538ad1a8eb513 for rustdoc-test-static-cling-1 Oct 15 06:01:38.473 INFO running `"docker" "create" "-v" "/mnt/big/crater/./work/local/target-dirs/rustdoc-test-static-cling-1/worker-0/master#0e07c4281c343e9e15a0a8fca79538ad1a8eb513:/target:rw,Z" "-v" "/mnt/big/crater/./work/local/test-source/worker-0/rustdoc-test-static-cling-1/master#0e07c4281c343e9e15a0a8fca79538ad1a8eb513:/source:ro,Z" "-v" "/mnt/big/crater/./work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/./work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +0e07c4281c343e9e15a0a8fca79538ad1a8eb513-alt build --frozen" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"` Oct 15 06:01:38.961 INFO blam! 59362564f89e82682ef23152056c527fbd048cdf8fb9001b7784010e2c83c10e Oct 15 06:01:38.963 INFO running `"docker" "start" "-a" "59362564f89e82682ef23152056c527fbd048cdf8fb9001b7784010e2c83c10e"` Oct 15 06:01:41.263 INFO kablam! usermod: no changes Oct 15 06:01:41.408 INFO kablam! Compiling quick-error v1.2.1 Oct 15 06:01:41.419 INFO kablam! Compiling ieee754 v0.2.2 Oct 15 06:01:41.439 INFO kablam! Compiling itertools v0.6.5 Oct 15 06:01:42.747 INFO kablam! Compiling fs-utils v1.0.0 Oct 15 06:01:44.341 INFO kablam! Compiling rust-htslib v0.15.0 Oct 15 06:02:16.503 INFO kablam! Compiling consensus v0.1.0 (/source) Oct 15 06:02:17.755 INFO kablam! warning: unused import: `std::env` Oct 15 06:02:17.755 INFO kablam! --> src/main.rs:12:5 Oct 15 06:02:17.755 INFO kablam! | Oct 15 06:02:17.755 INFO kablam! 12 | use std::env; Oct 15 06:02:17.755 INFO kablam! | ^^^^^^^^ Oct 15 06:02:17.755 INFO kablam! | Oct 15 06:02:17.755 INFO kablam! = note: #[warn(unused_imports)] on by default Oct 15 06:02:17.755 INFO kablam! Oct 15 06:02:17.755 INFO kablam! warning: unused import: `rust_htslib::prelude::*` Oct 15 06:02:17.755 INFO kablam! --> src/main.rs:16:5 Oct 15 06:02:17.755 INFO kablam! | Oct 15 06:02:17.755 INFO kablam! 16 | use rust_htslib::prelude::*; Oct 15 06:02:17.755 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^ Oct 15 06:02:17.755 INFO kablam! Oct 15 06:02:17.755 INFO kablam! warning: unused import: `std::io` Oct 15 06:02:17.755 INFO kablam! --> src/main.rs:21:5 Oct 15 06:02:17.755 INFO kablam! | Oct 15 06:02:17.755 INFO kablam! 21 | use std::io; Oct 15 06:02:17.755 INFO kablam! | ^^^^^^^ Oct 15 06:02:17.755 INFO kablam! Oct 15 06:02:17.755 INFO kablam! warning: unused import: `PathBuf` Oct 15 06:02:17.755 INFO kablam! --> src/main.rs:25:23 Oct 15 06:02:17.755 INFO kablam! | Oct 15 06:02:17.755 INFO kablam! 25 | use std::path::{Path, PathBuf}; Oct 15 06:02:17.755 INFO kablam! | ^^^^^^^ Oct 15 06:02:17.755 INFO kablam! Oct 15 06:02:17.756 INFO kablam! warning: unused import: `SubCommand` Oct 15 06:02:17.756 INFO kablam! --> src/main.rs:26:22 Oct 15 06:02:17.756 INFO kablam! | Oct 15 06:02:17.756 INFO kablam! 26 | use clap::{Arg, App, SubCommand}; Oct 15 06:02:17.756 INFO kablam! | ^^^^^^^^^^ Oct 15 06:02:17.756 INFO kablam! Oct 15 06:02:17.756 INFO kablam! warning: unnecessary parentheses around `if` condition Oct 15 06:02:17.756 INFO kablam! --> src/main.rs:218:20 Oct 15 06:02:17.756 INFO kablam! | Oct 15 06:02:17.756 INFO kablam! 218 | if (num_position[&(i as usize)] == num_position[&(0 as usize)]) { Oct 15 06:02:17.756 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: remove these parentheses Oct 15 06:02:17.756 INFO kablam! | Oct 15 06:02:17.756 INFO kablam! = note: #[warn(unused_parens)] on by default Oct 15 06:02:17.756 INFO kablam! Oct 15 06:02:17.756 INFO kablam! warning: unnecessary parentheses around `if` condition Oct 15 06:02:17.756 INFO kablam! --> src/main.rs:239:16 Oct 15 06:02:17.756 INFO kablam! | Oct 15 06:02:17.756 INFO kablam! 239 | if (baseEach_percent_record.len() > 0) { Oct 15 06:02:17.756 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: remove these parentheses Oct 15 06:02:17.756 INFO kablam! Oct 15 06:02:17.920 INFO kablam! warning: unused import: `std::io::prelude` Oct 15 06:02:17.920 INFO kablam! --> src/main.rs:22:5 Oct 15 06:02:17.920 INFO kablam! | Oct 15 06:02:17.920 INFO kablam! 22 | use std::io::prelude::*; Oct 15 06:02:17.920 INFO kablam! | ^^^^^^^^^^^^^^^^ Oct 15 06:02:17.920 INFO kablam! Oct 15 06:02:17.932 INFO kablam! warning: unused variable: `consensus_base` Oct 15 06:02:17.932 INFO kablam! --> src/main.rs:139:9 Oct 15 06:02:17.932 INFO kablam! | Oct 15 06:02:17.932 INFO kablam! 139 | let consensus_base:Vec = Vec::new(); Oct 15 06:02:17.932 INFO kablam! | ^^^^^^^^^^^^^^ help: consider using `_consensus_base` instead Oct 15 06:02:17.932 INFO kablam! | Oct 15 06:02:17.932 INFO kablam! = note: #[warn(unused_variables)] on by default Oct 15 06:02:17.932 INFO kablam! Oct 15 06:02:17.932 INFO kablam! warning: unused variable: `consensus_source_reads` Oct 15 06:02:17.932 INFO kablam! --> src/main.rs:144:13 Oct 15 06:02:17.932 INFO kablam! | Oct 15 06:02:17.932 INFO kablam! 144 | let mut consensus_source_reads = String::new(); Oct 15 06:02:17.932 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^ help: consider using `_consensus_source_reads` instead Oct 15 06:02:17.932 INFO kablam! Oct 15 06:02:17.932 INFO kablam! warning: unused variable: `chrom` Oct 15 06:02:17.932 INFO kablam! --> src/main.rs:283:121 Oct 15 06:02:17.932 INFO kablam! | Oct 15 06:02:17.932 INFO kablam! 283 | fn block_consensus(pd:& mut HashMap, Vec, Vec, CigarStringView, bool)>>>, chrom: i32, use_check:bool, min_t_s: &u32, min_t_p: &f32, o_r1: & mut File, o_r2: & mut File, need_trim:bool) { Oct 15 06:02:17.932 INFO kablam! | ^^^^^ help: consider using `_chrom` instead Oct 15 06:02:17.932 INFO kablam! Oct 15 06:02:17.932 INFO kablam! warning: value assigned to `new_seq_b` is never read Oct 15 06:02:17.932 INFO kablam! --> src/main.rs:370:21 Oct 15 06:02:17.932 INFO kablam! | Oct 15 06:02:17.932 INFO kablam! 370 | let mut new_seq_b:Vec = Vec::new(); Oct 15 06:02:17.932 INFO kablam! | ^^^^^^^^^ Oct 15 06:02:17.932 INFO kablam! | Oct 15 06:02:17.932 INFO kablam! = note: #[warn(unused_assignments)] on by default Oct 15 06:02:17.932 INFO kablam! Oct 15 06:02:17.939 INFO kablam! warning: variable does not need to be mutable Oct 15 06:02:17.939 INFO kablam! --> src/main.rs:74:9 Oct 15 06:02:17.939 INFO kablam! | Oct 15 06:02:17.939 INFO kablam! 74 | let mut pair; Oct 15 06:02:17.939 INFO kablam! | ----^^^^ Oct 15 06:02:17.939 INFO kablam! | | Oct 15 06:02:17.940 INFO kablam! | help: remove this `mut` Oct 15 06:02:17.940 INFO kablam! | Oct 15 06:02:17.940 INFO kablam! = note: #[warn(unused_mut)] on by default Oct 15 06:02:17.940 INFO kablam! Oct 15 06:02:17.940 INFO kablam! warning: variable does not need to be mutable Oct 15 06:02:17.940 INFO kablam! --> src/main.rs:75:9 Oct 15 06:02:17.941 INFO kablam! | Oct 15 06:02:17.941 INFO kablam! 75 | let mut strand; Oct 15 06:02:17.941 INFO kablam! | ----^^^^^^ Oct 15 06:02:17.941 INFO kablam! | | Oct 15 06:02:17.941 INFO kablam! | help: remove this `mut` Oct 15 06:02:17.942 INFO kablam! Oct 15 06:02:17.942 INFO kablam! warning: variable does not need to be mutable Oct 15 06:02:17.942 INFO kablam! --> src/main.rs:76:9 Oct 15 06:02:17.942 INFO kablam! | Oct 15 06:02:17.942 INFO kablam! 76 | let mut aln_pos; Oct 15 06:02:17.942 INFO kablam! | ----^^^^^^^ Oct 15 06:02:17.943 INFO kablam! | | Oct 15 06:02:17.943 INFO kablam! | help: remove this `mut` Oct 15 06:02:17.943 INFO kablam! Oct 15 06:02:17.964 INFO kablam! warning: variable does not need to be mutable Oct 15 06:02:17.964 INFO kablam! --> src/main.rs:144:9 Oct 15 06:02:17.964 INFO kablam! | Oct 15 06:02:17.964 INFO kablam! 144 | let mut consensus_source_reads = String::new(); Oct 15 06:02:17.964 INFO kablam! | ----^^^^^^^^^^^^^^^^^^^^^^ Oct 15 06:02:17.964 INFO kablam! | | Oct 15 06:02:17.964 INFO kablam! | help: remove this `mut` Oct 15 06:02:17.964 INFO kablam! Oct 15 06:02:17.964 INFO kablam! warning: variable does not need to be mutable Oct 15 06:02:17.964 INFO kablam! --> src/main.rs:151:9 Oct 15 06:02:17.964 INFO kablam! | Oct 15 06:02:17.964 INFO kablam! 151 | let mut top_cigar:&CigarStringView; Oct 15 06:02:17.964 INFO kablam! | ----^^^^^^^^^ Oct 15 06:02:17.964 INFO kablam! | | Oct 15 06:02:17.964 INFO kablam! | help: remove this `mut` Oct 15 06:02:17.965 INFO kablam! Oct 15 06:02:17.978 INFO kablam! warning: variable does not need to be mutable Oct 15 06:02:17.978 INFO kablam! --> src/main.rs:338:9 Oct 15 06:02:17.978 INFO kablam! | Oct 15 06:02:17.978 INFO kablam! 338 | let mut need_trim:bool; Oct 15 06:02:17.978 INFO kablam! | ----^^^^^^^^^ Oct 15 06:02:17.978 INFO kablam! | | Oct 15 06:02:17.978 INFO kablam! | help: remove this `mut` Oct 15 06:02:17.978 INFO kablam! Oct 15 06:02:17.978 INFO kablam! warning: variable does not need to be mutable Oct 15 06:02:17.978 INFO kablam! --> src/main.rs:355:9 Oct 15 06:02:17.978 INFO kablam! | Oct 15 06:02:17.978 INFO kablam! 355 | let mut chrom = 0; Oct 15 06:02:17.978 INFO kablam! | ----^^^^^ Oct 15 06:02:17.978 INFO kablam! | | Oct 15 06:02:17.978 INFO kablam! | help: remove this `mut` Oct 15 06:02:17.978 INFO kablam! Oct 15 06:02:17.991 INFO kablam! warning: function `bamLineParse` should have a snake case name such as `bam_line_parse` Oct 15 06:02:17.991 INFO kablam! --> src/main.rs:68:1 Oct 15 06:02:17.991 INFO kablam! | Oct 15 06:02:17.991 INFO kablam! 68 | / fn bamLineParse(record:&Record) -> (String, String, String, i32, i32){ Oct 15 06:02:17.991 INFO kablam! 69 | | Oct 15 06:02:17.991 INFO kablam! 70 | | let qname_str = String::from_utf8_lossy(record.qname()).to_string(); Oct 15 06:02:17.991 INFO kablam! 71 | | let temp_v:Vec<&str> = qname_str.split('#').collect(); Oct 15 06:02:17.991 INFO kablam! ... | Oct 15 06:02:17.991 INFO kablam! 97 | | (index, pair.to_string(), strand.to_string(), insert_size.abs(), aln_pos) Oct 15 06:02:17.991 INFO kablam! 98 | | } Oct 15 06:02:17.991 INFO kablam! | |_^ Oct 15 06:02:17.991 INFO kablam! | Oct 15 06:02:17.991 INFO kablam! = note: #[warn(non_snake_case)] on by default Oct 15 06:02:17.991 INFO kablam! Oct 15 06:02:17.991 INFO kablam! warning: variable `baseEach_num_record` should have a snake case name such as `base_each_num_record` Oct 15 06:02:17.991 INFO kablam! --> src/main.rs:147:9 Oct 15 06:02:17.991 INFO kablam! | Oct 15 06:02:17.992 INFO kablam! 147 | let mut baseEach_num_record = String::new(); Oct 15 06:02:17.992 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^ Oct 15 06:02:17.992 INFO kablam! Oct 15 06:02:17.992 INFO kablam! warning: variable `baseEach_percent_record` should have a snake case name such as `base_each_percent_record` Oct 15 06:02:17.992 INFO kablam! --> src/main.rs:148:9 Oct 15 06:02:17.992 INFO kablam! | Oct 15 06:02:17.992 INFO kablam! 148 | let mut baseEach_percent_record = String::new(); Oct 15 06:02:17.992 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ Oct 15 06:02:17.992 INFO kablam! Oct 15 06:02:17.992 INFO kablam! warning: unused `std::result::Result` which must be used Oct 15 06:02:17.992 INFO kablam! --> src/main.rs:267:9 Oct 15 06:02:17.992 INFO kablam! | Oct 15 06:02:17.992 INFO kablam! 267 | o_buff.write(&member_record.2); Oct 15 06:02:17.992 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Oct 15 06:02:17.992 INFO kablam! | Oct 15 06:02:17.992 INFO kablam! = note: #[warn(unused_must_use)] on by default Oct 15 06:02:17.992 INFO kablam! = note: this `Result` may be an `Err` variant, which should be handled Oct 15 06:02:17.992 INFO kablam! Oct 15 06:02:17.992 INFO kablam! warning: unused `std::result::Result` which must be used Oct 15 06:02:17.992 INFO kablam! --> src/main.rs:269:9 Oct 15 06:02:17.992 INFO kablam! | Oct 15 06:02:17.992 INFO kablam! 269 | o_buff.write(&member_record.0); Oct 15 06:02:17.992 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Oct 15 06:02:17.992 INFO kablam! | Oct 15 06:02:17.992 INFO kablam! = note: this `Result` may be an `Err` variant, which should be handled Oct 15 06:02:17.992 INFO kablam! Oct 15 06:02:17.993 INFO kablam! warning: unused `std::result::Result` which must be used Oct 15 06:02:17.993 INFO kablam! --> src/main.rs:272:9 Oct 15 06:02:17.993 INFO kablam! | Oct 15 06:02:17.993 INFO kablam! 272 | o_buff.write(&real_qual_temp); Oct 15 06:02:17.993 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Oct 15 06:02:17.993 INFO kablam! | Oct 15 06:02:17.993 INFO kablam! = note: this `Result` may be an `Err` variant, which should be handled Oct 15 06:02:17.993 INFO kablam! Oct 15 06:02:17.993 INFO kablam! warning: unused `std::result::Result` which must be used Oct 15 06:02:17.993 INFO kablam! --> src/main.rs:274:5 Oct 15 06:02:17.993 INFO kablam! | Oct 15 06:02:17.993 INFO kablam! 274 | o_buff.write(b"\n"); Oct 15 06:02:17.993 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^ Oct 15 06:02:17.993 INFO kablam! | Oct 15 06:02:17.993 INFO kablam! = note: this `Result` may be an `Err` variant, which should be handled Oct 15 06:02:17.993 INFO kablam! Oct 15 06:02:17.993 INFO kablam! warning: unused `std::result::Result` which must be used Oct 15 06:02:17.993 INFO kablam! --> src/main.rs:277:5 Oct 15 06:02:17.993 INFO kablam! | Oct 15 06:02:17.993 INFO kablam! 277 | o_buff.write(b"\n"); Oct 15 06:02:17.993 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^ Oct 15 06:02:17.993 INFO kablam! | Oct 15 06:02:17.993 INFO kablam! = note: this `Result` may be an `Err` variant, which should be handled Oct 15 06:02:17.993 INFO kablam! Oct 15 06:02:17.993 INFO kablam! warning: unused `std::result::Result` which must be used Oct 15 06:02:17.993 INFO kablam! --> src/main.rs:280:5 Oct 15 06:02:17.993 INFO kablam! | Oct 15 06:02:17.993 INFO kablam! 280 | o_buff.write(b"\n"); Oct 15 06:02:17.993 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^ Oct 15 06:02:17.993 INFO kablam! | Oct 15 06:02:17.993 INFO kablam! = note: this `Result` may be an `Err` variant, which should be handled Oct 15 06:02:17.993 INFO kablam! Oct 15 06:02:17.994 INFO kablam! warning: variable `key_dupGroup` should have a snake case name such as `key_dup_group` Oct 15 06:02:17.994 INFO kablam! --> src/main.rs:286:10 Oct 15 06:02:17.994 INFO kablam! | Oct 15 06:02:17.994 INFO kablam! 286 | for (key_dupGroup, pair_dup) in pd.iter() { Oct 15 06:02:17.994 INFO kablam! | ^^^^^^^^^^^^ Oct 15 06:02:17.994 INFO kablam! Oct 15 06:02:17.994 INFO kablam! warning: variable `position_dupGroup` should have a snake case name such as `position_dup_group` Oct 15 06:02:17.994 INFO kablam! --> src/main.rs:357:9 Oct 15 06:02:17.994 INFO kablam! | Oct 15 06:02:17.994 INFO kablam! 357 | let mut position_dupGroup: HashMap, Vec, Vec, CigarStringView, bool)>>> = HashMap::new(); Oct 15 06:02:17.994 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^ Oct 15 06:02:17.994 INFO kablam! Oct 15 06:02:17.994 INFO kablam! warning: variable `key_dupGroup` should have a snake case name such as `key_dup_group` Oct 15 06:02:17.995 INFO kablam! --> src/main.rs:387:17 Oct 15 06:02:17.995 INFO kablam! | Oct 15 06:02:17.995 INFO kablam! 387 | let key_dupGroup = format!("{}_{}_{}_{}{}", index, chrom, aln_pos, strand, insert_size); Oct 15 06:02:17.995 INFO kablam! | ^^^^^^^^^^^^ Oct 15 06:02:17.995 INFO kablam! Oct 15 06:02:22.167 INFO kablam! Finished dev [unoptimized + debuginfo] target(s) in 40.87s Oct 15 06:02:22.174 INFO kablam! su: No module specific data is present Oct 15 06:02:23.407 INFO running `"docker" "rm" "-f" "59362564f89e82682ef23152056c527fbd048cdf8fb9001b7784010e2c83c10e"` Oct 15 06:02:23.699 INFO blam! 59362564f89e82682ef23152056c527fbd048cdf8fb9001b7784010e2c83c10e Oct 15 06:02:23.701 INFO running `"docker" "create" "-v" "/mnt/big/crater/./work/local/target-dirs/rustdoc-test-static-cling-1/worker-0/master#0e07c4281c343e9e15a0a8fca79538ad1a8eb513:/target:rw,Z" "-v" "/mnt/big/crater/./work/local/test-source/worker-0/rustdoc-test-static-cling-1/master#0e07c4281c343e9e15a0a8fca79538ad1a8eb513:/source:ro,Z" "-v" "/mnt/big/crater/./work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/./work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +0e07c4281c343e9e15a0a8fca79538ad1a8eb513-alt test --frozen --no-run" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"` Oct 15 06:02:24.175 INFO blam! c718c5701711c3834577f786236f345ad9e9e934bb7c5450890525f58d0c63e0 Oct 15 06:02:24.177 INFO running `"docker" "start" "-a" "c718c5701711c3834577f786236f345ad9e9e934bb7c5450890525f58d0c63e0"` Oct 15 06:02:26.594 INFO kablam! usermod: no changes Oct 15 06:02:26.711 INFO kablam! Compiling consensus v0.1.0 (/source) Oct 15 06:02:27.935 INFO kablam! warning: unused import: `std::env` Oct 15 06:02:27.935 INFO kablam! --> src/main.rs:12:5 Oct 15 06:02:27.935 INFO kablam! | Oct 15 06:02:27.935 INFO kablam! 12 | use std::env; Oct 15 06:02:27.935 INFO kablam! | ^^^^^^^^ Oct 15 06:02:27.935 INFO kablam! | Oct 15 06:02:27.935 INFO kablam! = note: #[warn(unused_imports)] on by default Oct 15 06:02:27.935 INFO kablam! Oct 15 06:02:27.935 INFO kablam! warning: unused import: `rust_htslib::prelude::*` Oct 15 06:02:27.935 INFO kablam! --> src/main.rs:16:5 Oct 15 06:02:27.935 INFO kablam! | Oct 15 06:02:27.935 INFO kablam! 16 | use rust_htslib::prelude::*; Oct 15 06:02:27.935 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^ Oct 15 06:02:27.935 INFO kablam! Oct 15 06:02:27.935 INFO kablam! warning: unused import: `std::io` Oct 15 06:02:27.935 INFO kablam! --> src/main.rs:21:5 Oct 15 06:02:27.935 INFO kablam! | Oct 15 06:02:27.935 INFO kablam! 21 | use std::io; Oct 15 06:02:27.935 INFO kablam! | ^^^^^^^ Oct 15 06:02:27.935 INFO kablam! Oct 15 06:02:27.935 INFO kablam! warning: unused import: `PathBuf` Oct 15 06:02:27.935 INFO kablam! --> src/main.rs:25:23 Oct 15 06:02:27.935 INFO kablam! | Oct 15 06:02:27.935 INFO kablam! 25 | use std::path::{Path, PathBuf}; Oct 15 06:02:27.935 INFO kablam! | ^^^^^^^ Oct 15 06:02:27.935 INFO kablam! Oct 15 06:02:27.935 INFO kablam! warning: unused import: `SubCommand` Oct 15 06:02:27.935 INFO kablam! --> src/main.rs:26:22 Oct 15 06:02:27.935 INFO kablam! | Oct 15 06:02:27.935 INFO kablam! 26 | use clap::{Arg, App, SubCommand}; Oct 15 06:02:27.935 INFO kablam! | ^^^^^^^^^^ Oct 15 06:02:27.935 INFO kablam! Oct 15 06:02:27.935 INFO kablam! warning: unnecessary parentheses around `if` condition Oct 15 06:02:27.935 INFO kablam! --> src/main.rs:218:20 Oct 15 06:02:27.935 INFO kablam! | Oct 15 06:02:27.935 INFO kablam! 218 | if (num_position[&(i as usize)] == num_position[&(0 as usize)]) { Oct 15 06:02:27.935 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: remove these parentheses Oct 15 06:02:27.935 INFO kablam! | Oct 15 06:02:27.935 INFO kablam! = note: #[warn(unused_parens)] on by default Oct 15 06:02:27.935 INFO kablam! Oct 15 06:02:27.935 INFO kablam! warning: unnecessary parentheses around `if` condition Oct 15 06:02:27.935 INFO kablam! --> src/main.rs:239:16 Oct 15 06:02:27.935 INFO kablam! | Oct 15 06:02:27.935 INFO kablam! 239 | if (baseEach_percent_record.len() > 0) { Oct 15 06:02:27.935 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: remove these parentheses Oct 15 06:02:27.935 INFO kablam! Oct 15 06:02:28.111 INFO kablam! warning: unused import: `std::io::prelude` Oct 15 06:02:28.111 INFO kablam! --> src/main.rs:22:5 Oct 15 06:02:28.111 INFO kablam! | Oct 15 06:02:28.111 INFO kablam! 22 | use std::io::prelude::*; Oct 15 06:02:28.111 INFO kablam! | ^^^^^^^^^^^^^^^^ Oct 15 06:02:28.111 INFO kablam! Oct 15 06:02:28.127 INFO kablam! warning: unused variable: `consensus_base` Oct 15 06:02:28.127 INFO kablam! --> src/main.rs:139:9 Oct 15 06:02:28.127 INFO kablam! | Oct 15 06:02:28.127 INFO kablam! 139 | let consensus_base:Vec = Vec::new(); Oct 15 06:02:28.127 INFO kablam! | ^^^^^^^^^^^^^^ help: consider using `_consensus_base` instead Oct 15 06:02:28.127 INFO kablam! | Oct 15 06:02:28.127 INFO kablam! = note: #[warn(unused_variables)] on by default Oct 15 06:02:28.127 INFO kablam! Oct 15 06:02:28.127 INFO kablam! warning: unused variable: `consensus_source_reads` Oct 15 06:02:28.127 INFO kablam! --> src/main.rs:144:13 Oct 15 06:02:28.127 INFO kablam! | Oct 15 06:02:28.127 INFO kablam! 144 | let mut consensus_source_reads = String::new(); Oct 15 06:02:28.127 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^ help: consider using `_consensus_source_reads` instead Oct 15 06:02:28.127 INFO kablam! Oct 15 06:02:28.127 INFO kablam! warning: unused variable: `chrom` Oct 15 06:02:28.127 INFO kablam! --> src/main.rs:283:121 Oct 15 06:02:28.127 INFO kablam! | Oct 15 06:02:28.127 INFO kablam! 283 | fn block_consensus(pd:& mut HashMap, Vec, Vec, CigarStringView, bool)>>>, chrom: i32, use_check:bool, min_t_s: &u32, min_t_p: &f32, o_r1: & mut File, o_r2: & mut File, need_trim:bool) { Oct 15 06:02:28.127 INFO kablam! | ^^^^^ help: consider using `_chrom` instead Oct 15 06:02:28.127 INFO kablam! Oct 15 06:02:28.127 INFO kablam! warning: value assigned to `new_seq_b` is never read Oct 15 06:02:28.127 INFO kablam! --> src/main.rs:370:21 Oct 15 06:02:28.127 INFO kablam! | Oct 15 06:02:28.127 INFO kablam! 370 | let mut new_seq_b:Vec = Vec::new(); Oct 15 06:02:28.127 INFO kablam! | ^^^^^^^^^ Oct 15 06:02:28.127 INFO kablam! | Oct 15 06:02:28.127 INFO kablam! = note: #[warn(unused_assignments)] on by default Oct 15 06:02:28.127 INFO kablam! Oct 15 06:02:28.144 INFO kablam! warning: variable does not need to be mutable Oct 15 06:02:28.144 INFO kablam! --> src/main.rs:74:9 Oct 15 06:02:28.144 INFO kablam! | Oct 15 06:02:28.144 INFO kablam! 74 | let mut pair; Oct 15 06:02:28.144 INFO kablam! | ----^^^^ Oct 15 06:02:28.144 INFO kablam! | | Oct 15 06:02:28.144 INFO kablam! | help: remove this `mut` Oct 15 06:02:28.144 INFO kablam! | Oct 15 06:02:28.144 INFO kablam! = note: #[warn(unused_mut)] on by default Oct 15 06:02:28.144 INFO kablam! Oct 15 06:02:28.144 INFO kablam! warning: variable does not need to be mutable Oct 15 06:02:28.144 INFO kablam! --> src/main.rs:75:9 Oct 15 06:02:28.144 INFO kablam! | Oct 15 06:02:28.144 INFO kablam! 75 | let mut strand; Oct 15 06:02:28.144 INFO kablam! | ----^^^^^^ Oct 15 06:02:28.144 INFO kablam! | | Oct 15 06:02:28.144 INFO kablam! | help: remove this `mut` Oct 15 06:02:28.144 INFO kablam! Oct 15 06:02:28.144 INFO kablam! warning: variable does not need to be mutable Oct 15 06:02:28.144 INFO kablam! --> src/main.rs:76:9 Oct 15 06:02:28.144 INFO kablam! | Oct 15 06:02:28.144 INFO kablam! 76 | let mut aln_pos; Oct 15 06:02:28.144 INFO kablam! | ----^^^^^^^ Oct 15 06:02:28.144 INFO kablam! | | Oct 15 06:02:28.144 INFO kablam! | help: remove this `mut` Oct 15 06:02:28.144 INFO kablam! Oct 15 06:02:28.176 INFO kablam! warning: variable does not need to be mutable Oct 15 06:02:28.176 INFO kablam! --> src/main.rs:144:9 Oct 15 06:02:28.176 INFO kablam! | Oct 15 06:02:28.176 INFO kablam! 144 | let mut consensus_source_reads = String::new(); Oct 15 06:02:28.176 INFO kablam! | ----^^^^^^^^^^^^^^^^^^^^^^ Oct 15 06:02:28.177 INFO kablam! | | Oct 15 06:02:28.177 INFO kablam! | help: remove this `mut` Oct 15 06:02:28.177 INFO kablam! Oct 15 06:02:28.177 INFO kablam! warning: variable does not need to be mutable Oct 15 06:02:28.177 INFO kablam! --> src/main.rs:151:9 Oct 15 06:02:28.178 INFO kablam! | Oct 15 06:02:28.178 INFO kablam! 151 | let mut top_cigar:&CigarStringView; Oct 15 06:02:28.178 INFO kablam! | ----^^^^^^^^^ Oct 15 06:02:28.178 INFO kablam! | | Oct 15 06:02:28.178 INFO kablam! | help: remove this `mut` Oct 15 06:02:28.179 INFO kablam! Oct 15 06:02:28.202 INFO kablam! warning: variable does not need to be mutable Oct 15 06:02:28.202 INFO kablam! --> src/main.rs:338:9 Oct 15 06:02:28.202 INFO kablam! | Oct 15 06:02:28.202 INFO kablam! 338 | let mut need_trim:bool; Oct 15 06:02:28.202 INFO kablam! | ----^^^^^^^^^ Oct 15 06:02:28.202 INFO kablam! | | Oct 15 06:02:28.202 INFO kablam! | help: remove this `mut` Oct 15 06:02:28.202 INFO kablam! Oct 15 06:02:28.203 INFO kablam! warning: variable does not need to be mutable Oct 15 06:02:28.203 INFO kablam! --> src/main.rs:355:9 Oct 15 06:02:28.203 INFO kablam! | Oct 15 06:02:28.203 INFO kablam! 355 | let mut chrom = 0; Oct 15 06:02:28.206 INFO kablam! | ----^^^^^ Oct 15 06:02:28.206 INFO kablam! | | Oct 15 06:02:28.206 INFO kablam! | help: remove this `mut` Oct 15 06:02:28.206 INFO kablam! Oct 15 06:02:28.219 INFO kablam! warning: function `bamLineParse` should have a snake case name such as `bam_line_parse` Oct 15 06:02:28.219 INFO kablam! --> src/main.rs:68:1 Oct 15 06:02:28.219 INFO kablam! | Oct 15 06:02:28.219 INFO kablam! 68 | / fn bamLineParse(record:&Record) -> (String, String, String, i32, i32){ Oct 15 06:02:28.220 INFO kablam! 69 | | Oct 15 06:02:28.220 INFO kablam! 70 | | let qname_str = String::from_utf8_lossy(record.qname()).to_string(); Oct 15 06:02:28.220 INFO kablam! 71 | | let temp_v:Vec<&str> = qname_str.split('#').collect(); Oct 15 06:02:28.220 INFO kablam! ... | Oct 15 06:02:28.220 INFO kablam! 97 | | (index, pair.to_string(), strand.to_string(), insert_size.abs(), aln_pos) Oct 15 06:02:28.220 INFO kablam! 98 | | } Oct 15 06:02:28.220 INFO kablam! | |_^ Oct 15 06:02:28.220 INFO kablam! | Oct 15 06:02:28.220 INFO kablam! = note: #[warn(non_snake_case)] on by default Oct 15 06:02:28.220 INFO kablam! Oct 15 06:02:28.223 INFO kablam! warning: variable `baseEach_num_record` should have a snake case name such as `base_each_num_record` Oct 15 06:02:28.223 INFO kablam! --> src/main.rs:147:9 Oct 15 06:02:28.223 INFO kablam! | Oct 15 06:02:28.223 INFO kablam! 147 | let mut baseEach_num_record = String::new(); Oct 15 06:02:28.223 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^ Oct 15 06:02:28.223 INFO kablam! Oct 15 06:02:28.223 INFO kablam! warning: variable `baseEach_percent_record` should have a snake case name such as `base_each_percent_record` Oct 15 06:02:28.223 INFO kablam! --> src/main.rs:148:9 Oct 15 06:02:28.223 INFO kablam! | Oct 15 06:02:28.224 INFO kablam! 148 | let mut baseEach_percent_record = String::new(); Oct 15 06:02:28.224 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ Oct 15 06:02:28.224 INFO kablam! Oct 15 06:02:28.227 INFO kablam! warning: unused `std::result::Result` which must be used Oct 15 06:02:28.227 INFO kablam! --> src/main.rs:267:9 Oct 15 06:02:28.227 INFO kablam! | Oct 15 06:02:28.227 INFO kablam! 267 | o_buff.write(&member_record.2); Oct 15 06:02:28.227 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Oct 15 06:02:28.227 INFO kablam! | Oct 15 06:02:28.227 INFO kablam! = note: #[warn(unused_must_use)] on by default Oct 15 06:02:28.227 INFO kablam! = note: this `Result` may be an `Err` variant, which should be handled Oct 15 06:02:28.227 INFO kablam! Oct 15 06:02:28.229 INFO kablam! warning: unused `std::result::Result` which must be used Oct 15 06:02:28.229 INFO kablam! --> src/main.rs:269:9 Oct 15 06:02:28.229 INFO kablam! | Oct 15 06:02:28.229 INFO kablam! 269 | o_buff.write(&member_record.0); Oct 15 06:02:28.229 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Oct 15 06:02:28.229 INFO kablam! | Oct 15 06:02:28.231 INFO kablam! = note: this `Result` may be an `Err` variant, which should be handled Oct 15 06:02:28.231 INFO kablam! Oct 15 06:02:28.232 INFO kablam! warning: unused `std::result::Result` which must be used Oct 15 06:02:28.232 INFO kablam! --> src/main.rs:272:9 Oct 15 06:02:28.232 INFO kablam! | Oct 15 06:02:28.232 INFO kablam! 272 | o_buff.write(&real_qual_temp); Oct 15 06:02:28.232 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Oct 15 06:02:28.232 INFO kablam! | Oct 15 06:02:28.233 INFO kablam! = note: this `Result` may be an `Err` variant, which should be handled Oct 15 06:02:28.233 INFO kablam! Oct 15 06:02:28.233 INFO kablam! warning: unused `std::result::Result` which must be used Oct 15 06:02:28.233 INFO kablam! --> src/main.rs:274:5 Oct 15 06:02:28.233 INFO kablam! | Oct 15 06:02:28.233 INFO kablam! 274 | o_buff.write(b"\n"); Oct 15 06:02:28.233 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^ Oct 15 06:02:28.233 INFO kablam! | Oct 15 06:02:28.235 INFO kablam! = note: this `Result` may be an `Err` variant, which should be handled Oct 15 06:02:28.235 INFO kablam! Oct 15 06:02:28.235 INFO kablam! warning: unused `std::result::Result` which must be used Oct 15 06:02:28.235 INFO kablam! --> src/main.rs:277:5 Oct 15 06:02:28.235 INFO kablam! | Oct 15 06:02:28.235 INFO kablam! 277 | o_buff.write(b"\n"); Oct 15 06:02:28.235 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^ Oct 15 06:02:28.236 INFO kablam! | Oct 15 06:02:28.236 INFO kablam! = note: this `Result` may be an `Err` variant, which should be handled Oct 15 06:02:28.238 INFO kablam! Oct 15 06:02:28.238 INFO kablam! warning: unused `std::result::Result` which must be used Oct 15 06:02:28.238 INFO kablam! --> src/main.rs:280:5 Oct 15 06:02:28.238 INFO kablam! | Oct 15 06:02:28.238 INFO kablam! 280 | o_buff.write(b"\n"); Oct 15 06:02:28.238 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^ Oct 15 06:02:28.238 INFO kablam! | Oct 15 06:02:28.238 INFO kablam! = note: this `Result` may be an `Err` variant, which should be handled Oct 15 06:02:28.238 INFO kablam! Oct 15 06:02:28.241 INFO kablam! warning: variable `key_dupGroup` should have a snake case name such as `key_dup_group` Oct 15 06:02:28.241 INFO kablam! --> src/main.rs:286:10 Oct 15 06:02:28.241 INFO kablam! | Oct 15 06:02:28.241 INFO kablam! 286 | for (key_dupGroup, pair_dup) in pd.iter() { Oct 15 06:02:28.241 INFO kablam! | ^^^^^^^^^^^^ Oct 15 06:02:28.241 INFO kablam! Oct 15 06:02:28.242 INFO kablam! warning: variable `position_dupGroup` should have a snake case name such as `position_dup_group` Oct 15 06:02:28.243 INFO kablam! --> src/main.rs:357:9 Oct 15 06:02:28.243 INFO kablam! | Oct 15 06:02:28.243 INFO kablam! 357 | let mut position_dupGroup: HashMap, Vec, Vec, CigarStringView, bool)>>> = HashMap::new(); Oct 15 06:02:28.243 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^ Oct 15 06:02:28.243 INFO kablam! Oct 15 06:02:28.244 INFO kablam! warning: variable `key_dupGroup` should have a snake case name such as `key_dup_group` Oct 15 06:02:28.244 INFO kablam! --> src/main.rs:387:17 Oct 15 06:02:28.244 INFO kablam! | Oct 15 06:02:28.244 INFO kablam! 387 | let key_dupGroup = format!("{}_{}_{}_{}{}", index, chrom, aln_pos, strand, insert_size); Oct 15 06:02:28.244 INFO kablam! | ^^^^^^^^^^^^ Oct 15 06:02:28.244 INFO kablam! Oct 15 06:02:28.927 INFO kablam! Finished dev [unoptimized + debuginfo] target(s) in 2.30s Oct 15 06:02:28.932 INFO kablam! su: No module specific data is present Oct 15 06:02:30.115 INFO running `"docker" "rm" "-f" "c718c5701711c3834577f786236f345ad9e9e934bb7c5450890525f58d0c63e0"` Oct 15 06:02:30.407 INFO blam! c718c5701711c3834577f786236f345ad9e9e934bb7c5450890525f58d0c63e0 Oct 15 06:02:30.427 INFO running `"docker" "create" "-v" "/mnt/big/crater/./work/local/target-dirs/rustdoc-test-static-cling-1/worker-0/master#0e07c4281c343e9e15a0a8fca79538ad1a8eb513:/target:rw,Z" "-v" "/mnt/big/crater/./work/local/test-source/worker-0/rustdoc-test-static-cling-1/master#0e07c4281c343e9e15a0a8fca79538ad1a8eb513:/source:ro,Z" "-v" "/mnt/big/crater/./work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/./work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +0e07c4281c343e9e15a0a8fca79538ad1a8eb513-alt test --frozen" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"` Oct 15 06:02:30.864 INFO blam! 073241145b745ac4bf10c3cdb6db559e43e444054d4e4a58a3dd0abcd4fff881 Oct 15 06:02:30.866 INFO running `"docker" "start" "-a" "073241145b745ac4bf10c3cdb6db559e43e444054d4e4a58a3dd0abcd4fff881"` Oct 15 06:02:32.560 INFO kablam! usermod: no changes Oct 15 06:02:32.658 INFO kablam! Finished dev [unoptimized + debuginfo] target(s) in 0.08s Oct 15 06:02:32.675 INFO kablam! Running /target/debug/deps/consensus-1677fbd2a93528e3 Oct 15 06:02:32.675 INFO blam! Oct 15 06:02:32.675 INFO blam! running 0 tests Oct 15 06:02:32.675 INFO blam! Oct 15 06:02:32.675 INFO blam! test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out Oct 15 06:02:32.675 INFO blam! Oct 15 06:02:32.683 INFO kablam! su: No module specific data is present Oct 15 06:02:33.807 INFO running `"docker" "rm" "-f" "073241145b745ac4bf10c3cdb6db559e43e444054d4e4a58a3dd0abcd4fff881"` Oct 15 06:02:34.079 INFO blam! 073241145b745ac4bf10c3cdb6db559e43e444054d4e4a58a3dd0abcd4fff881