[INFO] cloning repository https://github.com/alevar/sam2gtf
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/alevar/sam2gtf" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Falevar%2Fsam2gtf", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Falevar%2Fsam2gtf'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 2ddec7e23ae2f6ae3a9e6fd9ced47aa5dc81c4e7
[INFO] testing alevar/sam2gtf/2ddec7e23ae2f6ae3a9e6fd9ced47aa5dc81c4e7 against nightly-2024-10-28 for randomize-layout
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Falevar%2Fsam2gtf" "/workspace/builds/worker-3-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-3-tc1/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/alevar/sam2gtf on toolchain nightly-2024-10-28
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+nightly-2024-10-28" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/alevar/sam2gtf
[INFO] finished tweaking git repo https://github.com/alevar/sam2gtf
[INFO] tweaked toml for git repo https://github.com/alevar/sam2gtf written to /workspace/builds/worker-3-tc1/source/Cargo.toml
[INFO] crate git repo https://github.com/alevar/sam2gtf already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+nightly-2024-10-28" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded rust-htslib v0.44.1
[INFO] [stderr]   Downloaded hts-sys v2.1.4
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4a844ea9eb2546a2d2c7022eacef16ef2e8229c7fbb2c7d4d55a9ceca922f72d" "/opt/rustwide/cargo-home/bin/cargo" "+nightly-2024-10-28" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 71fbb1fe2da3ad57baaa121b9ff10046372d28c9721c36311b1a2c4e283ee91e
[INFO] running `Command { std: "docker" "start" "-a" "71fbb1fe2da3ad57baaa121b9ff10046372d28c9721c36311b1a2c4e283ee91e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "71fbb1fe2da3ad57baaa121b9ff10046372d28c9721c36311b1a2c4e283ee91e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "71fbb1fe2da3ad57baaa121b9ff10046372d28c9721c36311b1a2c4e283ee91e", kill_on_drop: false }`
[INFO] [stdout] 71fbb1fe2da3ad57baaa121b9ff10046372d28c9721c36311b1a2c4e283ee91e
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4a844ea9eb2546a2d2c7022eacef16ef2e8229c7fbb2c7d4d55a9ceca922f72d" "/opt/rustwide/cargo-home/bin/cargo" "+nightly-2024-10-28" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 1b526d8350786199a321ae0e41fc465f63fc2511bfcaf7a20f25ca0804c8ce6f
[INFO] running `Command { std: "docker" "start" "-a" "1b526d8350786199a321ae0e41fc465f63fc2511bfcaf7a20f25ca0804c8ce6f", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.158
[INFO] [stderr]    Compiling shlex v1.3.0
[INFO] [stderr]    Compiling pkg-config v0.3.30
[INFO] [stderr]    Compiling proc-macro2 v1.0.86
[INFO] [stderr]    Compiling vcpkg v0.2.15
[INFO] [stderr]    Compiling unicode-ident v1.0.13
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling tinyvec_macros v0.1.1
[INFO] [stderr]    Compiling rustversion v1.0.17
[INFO] [stderr]    Compiling memchr v2.7.4
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling tinyvec v1.8.0
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling thiserror v1.0.63
[INFO] [stderr]    Compiling aho-corasick v1.1.3
[INFO] [stderr]    Compiling regex-syntax v0.8.4
[INFO] [stderr]    Compiling utf8parse v0.2.2
[INFO] [stderr]    Compiling quote v1.0.37
[INFO] [stderr]    Compiling glob v0.3.1
[INFO] [stderr]    Compiling jobserver v0.1.32
[INFO] [stderr]    Compiling syn v2.0.77
[INFO] [stderr]    Compiling anstyle-parse v0.2.5
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling cc v1.1.21
[INFO] [stderr]    Compiling unicode-normalization v0.1.24
[INFO] [stderr]    Compiling colorchoice v1.0.2
[INFO] [stderr]    Compiling is_terminal_polyfill v1.70.1
[INFO] [stderr]    Compiling percent-encoding v2.3.1
[INFO] [stderr]    Compiling heck v0.5.0
[INFO] [stderr]    Compiling anstyle v1.0.8
[INFO] [stderr]    Compiling unicode-bidi v0.3.15
[INFO] [stderr]    Compiling anstyle-query v1.1.1
[INFO] [stderr]    Compiling form_urlencoded v1.2.1
[INFO] [stderr]    Compiling anstream v0.6.15
[INFO] [stderr]    Compiling strsim v0.11.1
[INFO] [stderr]    Compiling openssl-src v300.3.2+3.3.2
[INFO] [stderr]    Compiling cmake v0.1.51
[INFO] [stderr]    Compiling idna v0.5.0
[INFO] [stderr]    Compiling clap_lex v0.7.2
[INFO] [stderr]    Compiling lazy_static v1.5.0
[INFO] [stderr]    Compiling regex-automata v0.4.7
[INFO] [stderr]    Compiling clap_builder v4.5.18
[INFO] [stderr]    Compiling libz-sys v1.1.20
[INFO] [stderr]    Compiling openssl-sys v0.9.103
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling curl-sys v0.4.76+curl-8.10.1
[INFO] [stderr]    Compiling hts-sys v2.1.4
[INFO] [stderr]    Compiling thiserror-impl v1.0.63
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling regex v1.10.6
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling url v2.5.2
[INFO] [stderr]    Compiling bio-types v1.0.4
[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling ieee754 v0.2.6
[INFO] [stderr]    Compiling byteorder v1.5.0
[INFO] [stderr]    Compiling clap v4.5.18
[INFO] [stderr]    Compiling rust-htslib v0.44.1
[INFO] [stderr]    Compiling sam2gtf v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 02s
[INFO] running `Command { std: "docker" "inspect" "1b526d8350786199a321ae0e41fc465f63fc2511bfcaf7a20f25ca0804c8ce6f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "1b526d8350786199a321ae0e41fc465f63fc2511bfcaf7a20f25ca0804c8ce6f", kill_on_drop: false }`
[INFO] [stdout] 1b526d8350786199a321ae0e41fc465f63fc2511bfcaf7a20f25ca0804c8ce6f
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4a844ea9eb2546a2d2c7022eacef16ef2e8229c7fbb2c7d4d55a9ceca922f72d" "/opt/rustwide/cargo-home/bin/cargo" "+nightly-2024-10-28" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] a1d74e428427ea4550eeac135798e0a474dad9f6aa3df796b2a87d7f7f1cbbe1
[INFO] running `Command { std: "docker" "start" "-a" "a1d74e428427ea4550eeac135798e0a474dad9f6aa3df796b2a87d7f7f1cbbe1", kill_on_drop: false }`
[INFO] [stderr]    Compiling sam2gtf v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.19s
[INFO] running `Command { std: "docker" "inspect" "a1d74e428427ea4550eeac135798e0a474dad9f6aa3df796b2a87d7f7f1cbbe1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "a1d74e428427ea4550eeac135798e0a474dad9f6aa3df796b2a87d7f7f1cbbe1", kill_on_drop: false }`
[INFO] [stdout] a1d74e428427ea4550eeac135798e0a474dad9f6aa3df796b2a87d7f7f1cbbe1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4a844ea9eb2546a2d2c7022eacef16ef2e8229c7fbb2c7d4d55a9ceca922f72d" "/opt/rustwide/cargo-home/bin/cargo" "+nightly-2024-10-28" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] aad0abea8bb8ecace43cd860a4475e77076d1e3ad89c2f91d8704976aa4952f3
[INFO] running `Command { std: "docker" "start" "-a" "aad0abea8bb8ecace43cd860a4475e77076d1e3ad89c2f91d8704976aa4952f3", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.04s
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/sam2gtf-cd41a116c9aba869)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "aad0abea8bb8ecace43cd860a4475e77076d1e3ad89c2f91d8704976aa4952f3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "aad0abea8bb8ecace43cd860a4475e77076d1e3ad89c2f91d8704976aa4952f3", kill_on_drop: false }`
[INFO] [stdout] aad0abea8bb8ecace43cd860a4475e77076d1e3ad89c2f91d8704976aa4952f3
