[INFO] fetching crate accord-rs 0.0.2...
[INFO] testing accord-rs-0.0.2 against nightly-2024-10-28+rustflags=-Zrandomize-layout for randomize-layout
[INFO] extracting crate accord-rs 0.0.2 into /workspace/builds/worker-1-tc2/source
[INFO] validating manifest of crates.io crate accord-rs 0.0.2 on toolchain nightly-2024-10-28
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+nightly-2024-10-28" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate accord-rs 0.0.2
[INFO] finished tweaking crates.io crate accord-rs 0.0.2
[INFO] tweaked toml for crates.io crate accord-rs 0.0.2 written to /workspace/builds/worker-1-tc2/source/Cargo.toml
[INFO] crate crates.io crate accord-rs 0.0.2 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+nightly-2024-10-28" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4a844ea9eb2546a2d2c7022eacef16ef2e8229c7fbb2c7d4d55a9ceca922f72d" "/opt/rustwide/cargo-home/bin/cargo" "+nightly-2024-10-28" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] ae84c4e04a29ee3057d85acc0168a73dee6cd926c62641a6460bd935939441dc
[INFO] running `Command { std: "docker" "start" "-a" "ae84c4e04a29ee3057d85acc0168a73dee6cd926c62641a6460bd935939441dc", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "ae84c4e04a29ee3057d85acc0168a73dee6cd926c62641a6460bd935939441dc", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ae84c4e04a29ee3057d85acc0168a73dee6cd926c62641a6460bd935939441dc", kill_on_drop: false }`
[INFO] [stdout] ae84c4e04a29ee3057d85acc0168a73dee6cd926c62641a6460bd935939441dc
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid -Zrandomize-layout" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4a844ea9eb2546a2d2c7022eacef16ef2e8229c7fbb2c7d4d55a9ceca922f72d" "/opt/rustwide/cargo-home/bin/cargo" "+nightly-2024-10-28" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] c5d10273bfa7121b5981f55391550c73310bed53e43b2d84dc463695d43f1e28
[INFO] running `Command { std: "docker" "start" "-a" "c5d10273bfa7121b5981f55391550c73310bed53e43b2d84dc463695d43f1e28", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.160
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[INFO] [stderr]    Compiling thiserror-impl v1.0.64
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[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling indoc v2.0.5
[INFO] [stderr]    Compiling either v1.13.0
[INFO] [stderr]    Compiling itertools v0.13.0
[INFO] [stderr]    Compiling counter v0.6.0
[INFO] [stderr]    Compiling bio-types v1.0.4
[INFO] [stderr]    Compiling pyo3-macros v0.22.5
[INFO] [stderr]    Compiling clap v4.5.20
[INFO] [stderr]    Compiling rust-htslib v0.46.0
[INFO] [stderr]    Compiling accord-rs v0.0.2 (/opt/rustwide/workdir)
[INFO] [stdout] warning: struct `App` is never constructed
[INFO] [stdout]  --> src/accord/app.rs:8:12
[INFO] [stdout]   |
[INFO] [stdout] 8 | pub struct App;
[INFO] [stdout]   |            ^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated function `main` is never used
[INFO] [stdout]   --> src/accord/app.rs:11:12
[INFO] [stdout]    |
[INFO] [stdout] 10 | impl App {
[INFO] [stdout]    | -------- associated function in this implementation
[INFO] [stdout] 11 |     pub fn main() {
[INFO] [stdout]    |            ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated function `parse_args` is never used
[INFO] [stdout]   --> src/accord/cli.rs:20:12
[INFO] [stdout]    |
[INFO] [stdout] 19 | impl Args {
[INFO] [stdout]    | --------- associated function in this implementation
[INFO] [stdout] 20 |     pub fn parse_args() -> Self {
[INFO] [stdout]    |            ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `write_file` is never used
[INFO] [stdout]  --> src/accord/utils.rs:8:8
[INFO] [stdout]   |
[INFO] [stdout] 8 | pub fn write_file(content: &String, path: &str) -> () {
[INFO] [stdout]   |        ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `get_fasta_seq` is never used
[INFO] [stdout]   --> src/accord/utils.rs:48:8
[INFO] [stdout]    |
[INFO] [stdout] 48 | pub fn get_fasta_seq(fasta_path: &String) -> Seq {
[INFO] [stdout]    |        ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 44s
[INFO] running `Command { std: "docker" "inspect" "c5d10273bfa7121b5981f55391550c73310bed53e43b2d84dc463695d43f1e28", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c5d10273bfa7121b5981f55391550c73310bed53e43b2d84dc463695d43f1e28", kill_on_drop: false }`
[INFO] [stdout] c5d10273bfa7121b5981f55391550c73310bed53e43b2d84dc463695d43f1e28
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid -Zrandomize-layout" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4a844ea9eb2546a2d2c7022eacef16ef2e8229c7fbb2c7d4d55a9ceca922f72d" "/opt/rustwide/cargo-home/bin/cargo" "+nightly-2024-10-28" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 40048be525cc6bb0f8f755a440fafc6e9f6fde96d1479a3836b7a3baf91d0578
[INFO] running `Command { std: "docker" "start" "-a" "40048be525cc6bb0f8f755a440fafc6e9f6fde96d1479a3836b7a3baf91d0578", kill_on_drop: false }`
[INFO] [stderr]    Compiling accord-rs v0.0.2 (/opt/rustwide/workdir)
[INFO] [stdout] error[E0599]: no function or associated item named `from_file` found for struct `seq::Seq` in the current scope
[INFO] [stdout]    --> src/accord/data/seq.rs:181:29
[INFO] [stdout]     |
[INFO] [stdout] 13  | pub struct Seq {
[INFO] [stdout]     | -------------- function or associated item `from_file` not found for this struct
[INFO] [stdout] ...
[INFO] [stdout] 181 |         let mut seqs = Seq::from_file("assets/K03455.fasta");
[INFO] [stdout]     |                             ^^^^^^^^^ function or associated item not found in `seq::Seq`
[INFO] [stdout]     |
[INFO] [stdout] note: if you're trying to build a new `seq::Seq` consider using one of the following associated functions:
[INFO] [stdout]       seq::Seq::new
[INFO] [stdout]       seq::Seq::from_string
[INFO] [stdout]       seq::Seq::py_new
[INFO] [stdout]    --> src/accord/data/seq.rs:23:5
[INFO] [stdout]     |
[INFO] [stdout] 23  |     pub fn new(label: String, sequence: Vec<u8>) -> Self {
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 27  |     pub fn from_string(label: String, seq_string: String) -> Self {
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 81  |     fn py_new(label: String, sequence: String) -> Self {
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no function or associated item named `from_file` found for struct `seq::Seq` in the current scope
[INFO] [stdout]    --> src/accord/data/seq.rs:181:29
[INFO] [stdout]     |
[INFO] [stdout] 13  | pub struct Seq {
[INFO] [stdout]     | -------------- function or associated item `from_file` not found for this struct
[INFO] [stdout] ...
[INFO] [stdout] 181 |         let mut seqs = Seq::from_file("assets/K03455.fasta");
[INFO] [stdout]     |                             ^^^^^^^^^ function or associated item not found in `seq::Seq`
[INFO] [stdout]     |
[INFO] [stdout] note: if you're trying to build a new `seq::Seq` consider using one of the following associated functions:
[INFO] [stdout]       seq::Seq::new
[INFO] [stdout]       seq::Seq::from_string
[INFO] [stdout]       seq::Seq::py_new
[INFO] [stdout]    --> src/accord/data/seq.rs:23:5
[INFO] [stdout]     |
[INFO] [stdout] 23  |     pub fn new(label: String, sequence: Vec<u8>) -> Self {
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 27  |     pub fn from_string(label: String, seq_string: String) -> Self {
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 81  |     fn py_new(label: String, sequence: String) -> Self {
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] For more information about this error, try `rustc --explain E0599`.
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `accord-rs` (bin "accord-rs" test) due to 1 previous error
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stdout] For more information about this error, try `rustc --explain E0599`.
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `accord-rs` (lib test) due to 1 previous error
[INFO] running `Command { std: "docker" "inspect" "40048be525cc6bb0f8f755a440fafc6e9f6fde96d1479a3836b7a3baf91d0578", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "40048be525cc6bb0f8f755a440fafc6e9f6fde96d1479a3836b7a3baf91d0578", kill_on_drop: false }`
[INFO] [stdout] 40048be525cc6bb0f8f755a440fafc6e9f6fde96d1479a3836b7a3baf91d0578
