[INFO] cloning repository https://github.com/zaeleus/noodles-count-features
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/zaeleus/noodles-count-features" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzaeleus%2Fnoodles-count-features", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzaeleus%2Fnoodles-count-features'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] b9f83fae86a166ac54700fdd6f117db09c6d7348
[INFO] testing zaeleus/noodles-count-features against nightly-2025-01-18+rustflags=-Zrandomize-layout for randomize-layout-3
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzaeleus%2Fnoodles-count-features" "/workspace/builds/worker-6-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc2/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/zaeleus/noodles-count-features on toolchain nightly-2025-01-18
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+nightly-2025-01-18" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/zaeleus/noodles-count-features
[INFO] finished tweaking git repo https://github.com/zaeleus/noodles-count-features
[INFO] tweaked toml for git repo https://github.com/zaeleus/noodles-count-features written to /workspace/builds/worker-6-tc2/source/Cargo.toml
[INFO] crate git repo https://github.com/zaeleus/noodles-count-features already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+nightly-2025-01-18" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:819108c5571ea2e421544af4d832f968d213c87fbe3707a016657f43d2f853bc" "/opt/rustwide/cargo-home/bin/cargo" "+nightly-2025-01-18" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 89251260c5dc340cba2a7229fe828493fff962ce88c5f3ffcb642a9995205058
[INFO] running `Command { std: "docker" "start" "-a" "89251260c5dc340cba2a7229fe828493fff962ce88c5f3ffcb642a9995205058", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "89251260c5dc340cba2a7229fe828493fff962ce88c5f3ffcb642a9995205058", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "89251260c5dc340cba2a7229fe828493fff962ce88c5f3ffcb642a9995205058", kill_on_drop: false }`
[INFO] [stdout] 89251260c5dc340cba2a7229fe828493fff962ce88c5f3ffcb642a9995205058
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid -Zrandomize-layout" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:819108c5571ea2e421544af4d832f968d213c87fbe3707a016657f43d2f853bc" "/opt/rustwide/cargo-home/bin/cargo" "+nightly-2025-01-18" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] ae669563b07dd174b66967e7427b2cb68588690c67fd8bd7ee33863661bb9117
[INFO] running `Command { std: "docker" "start" "-a" "ae669563b07dd174b66967e7427b2cb68588690c67fd8bd7ee33863661bb9117", kill_on_drop: false }`
[INFO] [stderr]    Compiling cc v1.0.97
[INFO] [stderr]    Compiling proc-macro2 v1.0.82
[INFO] [stderr]    Compiling crossbeam-utils v0.8.19
[INFO] [stderr]    Compiling crc32fast v1.4.0
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[INFO] [stderr]    Compiling memchr v2.7.2
[INFO] [stderr]    Compiling hashbrown v0.14.5
[INFO] [stderr]    Compiling bytes v1.6.0
[INFO] [stderr]    Compiling once_cell v1.19.0
[INFO] [stderr]    Compiling bit-vec v0.6.3
[INFO] [stderr]    Compiling time-core v0.1.2
[INFO] [stderr]    Compiling lexical-util v0.8.5
[INFO] [stderr]    Compiling libc v0.2.154
[INFO] [stderr]    Compiling num-conv v0.1.0
[INFO] [stderr]    Compiling powerfmt v0.2.0
[INFO] [stderr]    Compiling utf8parse v0.2.1
[INFO] [stderr]    Compiling miniz_oxide v0.7.2
[INFO] [stderr]    Compiling anstyle-parse v0.2.4
[INFO] [stderr]    Compiling itoa v1.0.11
[INFO] [stderr]    Compiling deranged v0.3.11
[INFO] [stderr]    Compiling tracing-core v0.1.32
[INFO] [stderr]    Compiling bitflags v2.5.0
[INFO] [stderr]    Compiling anstyle-query v1.0.3
[INFO] [stderr]    Compiling time-macros v0.2.18
[INFO] [stderr]    Compiling colorchoice v1.0.1
[INFO] [stderr]    Compiling is_terminal_polyfill v1.70.0
[INFO] [stderr]    Compiling anstyle v1.0.7
[INFO] [stderr]    Compiling strsim v0.11.1
[INFO] [stderr]    Compiling overload v0.1.1
[INFO] [stderr]    Compiling thiserror v1.0.60
[INFO] [stderr]    Compiling log v0.4.21
[INFO] [stderr]    Compiling anstream v0.6.14
[INFO] [stderr]    Compiling lexical-parse-integer v0.8.6
[INFO] [stderr]    Compiling indexmap v2.2.6
[INFO] [stderr]    Compiling lexical-write-integer v0.8.5
[INFO] [stderr]    Compiling clap_lex v0.7.0
[INFO] [stderr]    Compiling crossbeam-channel v0.5.12
[INFO] [stderr]    Compiling flate2 v1.0.30
[INFO] [stderr]    Compiling bstr v1.9.1
[INFO] [stderr]    Compiling lexical-parse-float v0.8.5
[INFO] [stderr]    Compiling lexical-write-float v0.8.5
[INFO] [stderr]    Compiling lazy_static v1.4.0
[INFO] [stderr]    Compiling heck v0.5.0
[INFO] [stderr]    Compiling anyhow v1.0.83
[INFO] [stderr]    Compiling quote v1.0.36
[INFO] [stderr]    Compiling sharded-slab v0.1.7
[INFO] [stderr]    Compiling clap_builder v4.5.2
[INFO] [stderr]    Compiling tracing-log v0.2.0
[INFO] [stderr]    Compiling nu-ansi-term v0.46.0
[INFO] [stderr]    Compiling thread_local v1.1.8
[INFO] [stderr]    Compiling libdeflate-sys v1.20.0
[INFO] [stderr]    Compiling syn v2.0.64
[INFO] [stderr]    Compiling libmimalloc-sys v0.1.37
[INFO] [stderr]    Compiling lexical-core v0.8.5
[INFO] [stderr]    Compiling smallvec v1.13.2
[INFO] [stderr]    Compiling interval-tree v0.2.0 (https://github.com/zaeleus/interval-tree.git?rev=e303d7254d53de5c418d6079d4b66c30c10958d4#e303d725)
[INFO] [stderr]    Compiling noodles-core v0.15.0
[INFO] [stderr]    Compiling time v0.3.36
[INFO] [stderr]    Compiling tracing-subscriber v0.3.18
[INFO] [stderr]    Compiling mimalloc v0.1.41
[INFO] [stderr]    Compiling libdeflater v1.20.0
[INFO] [stderr]    Compiling noodles-bgzf v0.30.0
[INFO] [stderr]    Compiling noodles-csi v0.35.0
[INFO] [stderr]    Compiling noodles-sam v0.60.0
[INFO] [stderr]    Compiling noodles-gff v0.33.0
[INFO] [stderr]    Compiling tracing-attributes v0.1.27
[INFO] [stderr]    Compiling git-testament-derive v0.2.0
[INFO] [stderr]    Compiling thiserror-impl v1.0.60
[INFO] [stderr]    Compiling clap_derive v4.5.4
[INFO] [stderr]    Compiling noodles-bam v0.63.0
[INFO] [stderr]    Compiling git-testament v0.2.5
[INFO] [stderr]    Compiling noodles v0.74.0
[INFO] [stderr]    Compiling tracing v0.1.40
[INFO] [stderr]    Compiling clap v4.5.4
[INFO] [stderr]    Compiling squab v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 22.29s
[INFO] running `Command { std: "docker" "inspect" "ae669563b07dd174b66967e7427b2cb68588690c67fd8bd7ee33863661bb9117", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ae669563b07dd174b66967e7427b2cb68588690c67fd8bd7ee33863661bb9117", kill_on_drop: false }`
[INFO] [stdout] ae669563b07dd174b66967e7427b2cb68588690c67fd8bd7ee33863661bb9117
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid -Zrandomize-layout" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:819108c5571ea2e421544af4d832f968d213c87fbe3707a016657f43d2f853bc" "/opt/rustwide/cargo-home/bin/cargo" "+nightly-2025-01-18" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 50285515814c27aa7c8df337a0a8dab9dc2ff527718bc5e52086aef8d39c6bcd
[INFO] running `Command { std: "docker" "start" "-a" "50285515814c27aa7c8df337a0a8dab9dc2ff527718bc5e52086aef8d39c6bcd", kill_on_drop: false }`
[INFO] [stderr]    Compiling squab v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 1.37s
[INFO] running `Command { std: "docker" "inspect" "50285515814c27aa7c8df337a0a8dab9dc2ff527718bc5e52086aef8d39c6bcd", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "50285515814c27aa7c8df337a0a8dab9dc2ff527718bc5e52086aef8d39c6bcd", kill_on_drop: false }`
[INFO] [stdout] 50285515814c27aa7c8df337a0a8dab9dc2ff527718bc5e52086aef8d39c6bcd
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid -Zrandomize-layout" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:819108c5571ea2e421544af4d832f968d213c87fbe3707a016657f43d2f853bc" "/opt/rustwide/cargo-home/bin/cargo" "+nightly-2025-01-18" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 0f581d87eed9e73ec8a46ee7c58d838580040ae4faaa8daf53bee238035c2af6
[INFO] running `Command { std: "docker" "start" "-a" "0f581d87eed9e73ec8a46ee7c58d838580040ae4faaa8daf53bee238035c2af6", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.07s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/squab-b11216fa007a5b60)
[INFO] [stdout] 
[INFO] [stdout] running 27 tests
[INFO] [stdout] test commands::tests::test_from_str ... ok
[INFO] [stdout] test count::context::tests::test_add ... ok
[INFO] [stdout] test count::context::tests::test_add_event ... ok
[INFO] [stdout] test count::reader::tests::test_read_counts ... ok
[INFO] [stdout] test count::reader::tests::test_read_line ... ok
[INFO] [stdout] test count::tests::test_get_reference_sequence ... ok
[INFO] [stdout] test count::writer::tests::test_write_counts ... ok
[INFO] [stdout] test count::writer::tests::test_write_stats ... ok
[INFO] [stdout] test feature::tests::test_end ... ok
[INFO] [stdout] test feature::tests::test_is_empty ... ok
[INFO] [stdout] test feature::tests::test_len ... ok
[INFO] [stdout] test feature::tests::test_reference_sequence_name ... ok
[INFO] [stdout] test feature::tests::test_start ... ok
[INFO] [stdout] test feature::tests::test_strand ... ok
[INFO] [stdout] test normalization::fpkm::tests::test_calculate_fpkms ... ok
[INFO] [stdout] test match_intervals::tests::test_next ... ok
[INFO] [stdout] test normalization::tests::test_merge_features ... ok
[INFO] [stdout] test normalization::fpkm::tests::test_calculate_fpkms_with_missing_feature ... ok
[INFO] [stdout] test normalization::tpm::tests::test_calculate_tpms ... ok
[INFO] [stdout] test normalization::writer::tests::test_write_values ... ok
[INFO] [stdout] test normalization::tests::test_sum_nonoverlapping_feature_lengths ... ok
[INFO] [stdout] test record_pairs::segment_position::tests::test_mate ... ok
[INFO] [stdout] test record_pairs::segment_position::tests::test_try_from_flag ... ok
[INFO] [stdout] test record_pairs::tests::test_key ... ok
[INFO] [stdout] test tests::test_read_features ... ok
[INFO] [stdout] test record_pairs::tests::test_mate_key ... ok
[INFO] [stdout] test normalization::tpm::tests::test_calculate_tpms_with_missing_feature ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 27 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/squab-e813cefaf1618dbe)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/quantify_single_end_forward_test.rs (/opt/rustwide/target/debug/deps/quantify_single_end_forward_test-574419e78d2f1638)
[INFO] [stdout] 
[INFO] [stdout] running 1 test
[INFO] [stdout] test test_quantify_with_single_end_forward_sample ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests squab
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "0f581d87eed9e73ec8a46ee7c58d838580040ae4faaa8daf53bee238035c2af6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "0f581d87eed9e73ec8a46ee7c58d838580040ae4faaa8daf53bee238035c2af6", kill_on_drop: false }`
[INFO] [stdout] 0f581d87eed9e73ec8a46ee7c58d838580040ae4faaa8daf53bee238035c2af6