[INFO] cloning repository https://github.com/carrascomj/ripkmer
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/carrascomj/ripkmer" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fcarrascomj%2Fripkmer", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fcarrascomj%2Fripkmer'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 953a2b75c0125b00890ce4f648a5a92637512c1c
[INFO] testing carrascomj/ripkmer against nightly-2025-01-18+rustflags=-Zrandomize-layout for randomize-layout-2
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fcarrascomj%2Fripkmer" "/workspace/builds/worker-4-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-4-tc2/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/carrascomj/ripkmer on toolchain nightly-2025-01-18
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+nightly-2025-01-18" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/carrascomj/ripkmer
[INFO] finished tweaking git repo https://github.com/carrascomj/ripkmer
[INFO] tweaked toml for git repo https://github.com/carrascomj/ripkmer written to /workspace/builds/worker-4-tc2/source/Cargo.toml
[INFO] crate git repo https://github.com/carrascomj/ripkmer already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+nightly-2025-01-18" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[ERROR] error running command: no output for 300 seconds
[INFO] testing carrascomj/ripkmer against nightly-2025-01-18+rustflags=-Zrandomize-layout for randomize-layout-2
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fcarrascomj%2Fripkmer" "/workspace/builds/worker-4-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-4-tc2/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/carrascomj/ripkmer on toolchain nightly-2025-01-18
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+nightly-2025-01-18" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/carrascomj/ripkmer
[INFO] finished tweaking git repo https://github.com/carrascomj/ripkmer
[INFO] tweaked toml for git repo https://github.com/carrascomj/ripkmer written to /workspace/builds/worker-4-tc2/source/Cargo.toml
[INFO] crate git repo https://github.com/carrascomj/ripkmer already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+nightly-2025-01-18" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded multimap v0.6.0
[INFO] [stderr]   Downloaded bio-types v0.5.1
[INFO] [stderr]   Downloaded bio v0.30.0
[INFO] [stderr]   Downloaded bit-vec v0.5.1
[INFO] [stderr]   Downloaded bv v0.11.0
[INFO] [stderr]   Downloaded snafu v0.5.0
[INFO] [stderr]   Downloaded bytecount v0.6.0
[INFO] [stderr]   Downloaded bit-set v0.5.1
[INFO] [stderr]   Downloaded aho-corasick v0.7.8
[INFO] [stderr]   Downloaded statrs v0.11.0
[INFO] [stderr]   Downloaded snafu-derive v0.5.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:819108c5571ea2e421544af4d832f968d213c87fbe3707a016657f43d2f853bc" "/opt/rustwide/cargo-home/bin/cargo" "+nightly-2025-01-18" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] a43b4a8aebdcd155d7a8d15e26a7f7bd04e76defede0eb5443845c0e7c8c98f1
[INFO] running `Command { std: "docker" "start" "-a" "a43b4a8aebdcd155d7a8d15e26a7f7bd04e76defede0eb5443845c0e7c8c98f1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "a43b4a8aebdcd155d7a8d15e26a7f7bd04e76defede0eb5443845c0e7c8c98f1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "a43b4a8aebdcd155d7a8d15e26a7f7bd04e76defede0eb5443845c0e7c8c98f1", kill_on_drop: false }`
[INFO] [stdout] a43b4a8aebdcd155d7a8d15e26a7f7bd04e76defede0eb5443845c0e7c8c98f1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid -Zrandomize-layout" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:819108c5571ea2e421544af4d832f968d213c87fbe3707a016657f43d2f853bc" "/opt/rustwide/cargo-home/bin/cargo" "+nightly-2025-01-18" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 0ff440934e38bd36640e9f18e9bda00eb6b645a4cf69ee47f74a605423ebe284
[INFO] running `Command { std: "docker" "start" "-a" "0ff440934e38bd36640e9f18e9bda00eb6b645a4cf69ee47f74a605423ebe284", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.8
[INFO] [stderr]    Compiling autocfg v1.0.0
[INFO] [stderr]    Compiling unicode-xid v0.2.0
[INFO] [stderr]    Compiling syn v1.0.15
[INFO] [stderr]    Compiling autocfg v0.1.7
[INFO] [stderr]    Compiling rand_core v0.4.2
[INFO] [stderr]    Compiling serde v1.0.104
[INFO] [stderr]    Compiling libc v0.2.67
[INFO] [stderr]    Compiling memchr v2.3.3
[INFO] [stderr]    Compiling byteorder v1.3.4
[INFO] [stderr]    Compiling proc-macro2 v0.4.30
[INFO] [stderr]    Compiling unicode-xid v0.1.0
[INFO] [stderr]    Compiling lazy_static v1.4.0
[INFO] [stderr]    Compiling cc v1.0.50
[INFO] [stderr]    Compiling syn v0.15.44
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling ryu v1.0.2
[INFO] [stderr]    Compiling doc-comment v0.3.1
[INFO] [stderr]    Compiling rand_core v0.3.1
[INFO] [stderr]    Compiling bv v0.11.0
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling rand_xorshift v0.1.1
[INFO] [stderr]    Compiling rand_hc v0.1.0
[INFO] [stderr]    Compiling rand_isaac v0.1.1
[INFO] [stderr]    Compiling rand_jitter v0.1.4
[INFO] [stderr]    Compiling num-traits v0.2.11
[INFO] [stderr]    Compiling rand_pcg v0.1.2
[INFO] [stderr]    Compiling rand_chacha v0.1.1
[INFO] [stderr]    Compiling rand v0.6.5
[INFO] [stderr]    Compiling num-integer v0.1.42
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling aho-corasick v0.7.8
[INFO] [stderr]    Compiling thread_local v1.0.1
[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling regex-automata v0.1.8
[INFO] [stderr]    Compiling regex-syntax v0.6.14
[INFO] [stderr]    Compiling cfg-if v0.1.10
[INFO] [stderr]    Compiling rustc-demangle v0.1.16
[INFO] [stderr]    Compiling unicode-segmentation v1.6.0
[INFO] [stderr]    Compiling either v1.5.3
[INFO] [stderr]    Compiling ndarray v0.13.0
[INFO] [stderr]    Compiling matrixmultiply v0.2.3
[INFO] [stderr]    Compiling itertools v0.8.2
[INFO] [stderr]    Compiling csv-core v0.1.10
[INFO] [stderr]    Compiling quote v1.0.2
[INFO] [stderr]    Compiling quote v0.6.13
[INFO] [stderr]    Compiling rand_os v0.1.3
[INFO] [stderr]    Compiling heck v0.3.1
[INFO] [stderr]    Compiling backtrace-sys v0.1.32
[INFO] [stderr]    Compiling itoa v0.4.5
[INFO] [stderr]    Compiling bit-vec v0.5.1
[INFO] [stderr]    Compiling ordermap v0.3.5
[INFO] [stderr]    Compiling fixedbitset v0.1.9
[INFO] [stderr]    Compiling bio v0.30.0
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling fxhash v0.2.1
[INFO] [stderr]    Compiling fnv v1.0.6
[INFO] [stderr]    Compiling bit-set v0.5.1
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling strum v0.16.0
[INFO] [stderr]    Compiling bytecount v0.6.0
[INFO] [stderr]    Compiling approx v0.3.2
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling petgraph v0.4.13
[INFO] [stderr]    Compiling ordered-float v1.0.2
[INFO] [stderr]    Compiling statrs v0.11.0
[INFO] [stderr]    Compiling backtrace v0.3.44
[INFO] [stderr]    Compiling regex v1.3.4
[INFO] [stderr]    Compiling serde_derive v1.0.104
[INFO] [stderr]    Compiling getset v0.0.9
[INFO] [stderr]    Compiling strum_macros v0.16.0
[INFO] [stderr]    Compiling snafu-derive v0.5.0
[INFO] [stderr]    Compiling snafu v0.5.0
[INFO] [stderr]    Compiling bstr v0.2.11
[INFO] [stderr]    Compiling multimap v0.6.0
[INFO] [stderr]    Compiling bio-types v0.5.1
[INFO] [stderr]    Compiling vec_map v0.8.1
[INFO] [stderr]    Compiling csv v1.1.3
[INFO] [stderr]    Compiling ripkmer v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 10.42s
[INFO] running `Command { std: "docker" "inspect" "0ff440934e38bd36640e9f18e9bda00eb6b645a4cf69ee47f74a605423ebe284", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "0ff440934e38bd36640e9f18e9bda00eb6b645a4cf69ee47f74a605423ebe284", kill_on_drop: false }`
[INFO] [stdout] 0ff440934e38bd36640e9f18e9bda00eb6b645a4cf69ee47f74a605423ebe284
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid -Zrandomize-layout" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:819108c5571ea2e421544af4d832f968d213c87fbe3707a016657f43d2f853bc" "/opt/rustwide/cargo-home/bin/cargo" "+nightly-2025-01-18" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 4cc5401da7a9de8086f9c2ff8e77c085d5f268464a4c959296f18e1cd2f33dd4
[INFO] running `Command { std: "docker" "start" "-a" "4cc5401da7a9de8086f9c2ff8e77c085d5f268464a4c959296f18e1cd2f33dd4", kill_on_drop: false }`
[INFO] [stderr]    Compiling ripkmer v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.32s
[INFO] running `Command { std: "docker" "inspect" "4cc5401da7a9de8086f9c2ff8e77c085d5f268464a4c959296f18e1cd2f33dd4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4cc5401da7a9de8086f9c2ff8e77c085d5f268464a4c959296f18e1cd2f33dd4", kill_on_drop: false }`
[INFO] [stdout] 4cc5401da7a9de8086f9c2ff8e77c085d5f268464a4c959296f18e1cd2f33dd4
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid -Zrandomize-layout" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:819108c5571ea2e421544af4d832f968d213c87fbe3707a016657f43d2f853bc" "/opt/rustwide/cargo-home/bin/cargo" "+nightly-2025-01-18" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 4d56744a52bffc52ffd96d504e946db18aca33d6723fa7655ef906da925c522b
[INFO] running `Command { std: "docker" "start" "-a" "4d56744a52bffc52ffd96d504e946db18aca33d6723fa7655ef906da925c522b", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.05s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/ripkmer-6839601ee93356ab)
[INFO] [stdout] 
[INFO] [stdout] running 5 tests
[INFO] [stdout] test tests::counter_comp ... ok
[INFO] [stdout] test tests::kmer_stats ... ok
[INFO] [stdout] test tests::no_prefix ... ok
[INFO] [stdout] test tests::n_less_than_k ... ok
[INFO] [stdout] test tests::one_result ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 5 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/ripkmer-f0f03cbdc6b127f1)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests ripkmer
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "4d56744a52bffc52ffd96d504e946db18aca33d6723fa7655ef906da925c522b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4d56744a52bffc52ffd96d504e946db18aca33d6723fa7655ef906da925c522b", kill_on_drop: false }`
[INFO] [stdout] 4d56744a52bffc52ffd96d504e946db18aca33d6723fa7655ef906da925c522b