[INFO] cloning repository https://github.com/NickRoz1/gbam
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/NickRoz1/gbam" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FNickRoz1%2Fgbam", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FNickRoz1%2Fgbam'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] df00e747ead253e2ac6b11fe0af374d534dedc2d
[INFO] testing NickRoz1/gbam against nightly-2025-01-18 for randomize-layout-2
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FNickRoz1%2Fgbam" "/workspace/builds/worker-6-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc1/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/NickRoz1/gbam on toolchain nightly-2025-01-18
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+nightly-2025-01-18" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/NickRoz1/gbam
[INFO] finished tweaking git repo https://github.com/NickRoz1/gbam
[INFO] tweaked toml for git repo https://github.com/NickRoz1/gbam written to /workspace/builds/worker-6-tc1/source/Cargo.toml
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+nightly-2025-01-18" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
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[INFO] [stderr]       Adding rust-htslib v0.39.5 (available: v0.49.0)
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+nightly-2025-01-18" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:819108c5571ea2e421544af4d832f968d213c87fbe3707a016657f43d2f853bc" "/opt/rustwide/cargo-home/bin/cargo" "+nightly-2025-01-18" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 3ee354dc5b94785207ec6b1a74d550511c0fdf97c027dcd6333dba2fc9eded9f
[INFO] running `Command { std: "docker" "start" "-a" "3ee354dc5b94785207ec6b1a74d550511c0fdf97c027dcd6333dba2fc9eded9f", kill_on_drop: false }`
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[INFO] [stdout] e81d322f31fb7ca8cd8e5a0410c03422dda573d736c0e08d7b679d33b2358bec
[INFO] running `Command { std: "docker" "start" "-a" "e81d322f31fb7ca8cd8e5a0410c03422dda573d736c0e08d7b679d33b2358bec", kill_on_drop: false }`
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[INFO] [stderr]    Compiling icu_normalizer v1.5.0
[INFO] [stderr]    Compiling bam_tools v0.1.0 (/opt/rustwide/workdir/bam_tools)
[INFO] [stdout] warning: elided lifetime has a name
[INFO] [stdout]   --> bam_tools/src/reader/records.rs:16:58
[INFO] [stdout]    |
[INFO] [stdout] 15 | impl<'a> Records<'a> {
[INFO] [stdout]    |      -- lifetime `'a` declared here
[INFO] [stdout] 16 |     pub(crate) fn new(reader: &'a mut Reader) -> Records<'_> {
[INFO] [stdout]    |                                                          ^^ this elided lifetime gets resolved as `'a`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(elided_named_lifetimes)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]    Compiling bincode v1.3.3
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> bam_tools/src/sorting/sort.rs:108:5
[INFO] [stdout]     |
[INFO] [stdout] 108 |     mut writer: &mut W,
[INFO] [stdout]     |     ----^^^^^^
[INFO] [stdout]     |     |
[INFO] [stdout]     |     help: remove this `mut`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_mut)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> bam_tools/src/sorting/sort.rs:109:5
[INFO] [stdout]     |
[INFO] [stdout] 109 |     mut index_writer: &mut IndexW,
[INFO] [stdout]     |     ----^^^^^^^^^^^^
[INFO] [stdout]     |     |
[INFO] [stdout]     |     help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> bam_tools/src/sorting/sort.rs:146:5
[INFO] [stdout]     |
[INFO] [stdout] 146 |     mut index_file_to_create: Option<IndexW>,
[INFO] [stdout]     |     ----^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |     |
[INFO] [stdout]     |     help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]    Compiling idna_adapter v1.2.0
[INFO] [stdout] warning: field `track_progress` is never read
[INFO] [stdout]   --> bam_tools/src/reader.rs:22:5
[INFO] [stdout]    |
[INFO] [stdout] 17 | pub struct Reader {
[INFO] [stdout]    |            ------ field in this struct
[INFO] [stdout] ...
[INFO] [stdout] 22 |     track_progress: Option<u64>,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: methods `get_name` and `get_refid` are never used
[INFO] [stdout]    --> bam_tools/src/record/bamrawrecord.rs:107:19
[INFO] [stdout]     |
[INFO] [stdout] 15  | impl<'a> BAMRawRecord<'a> {
[INFO] [stdout]     | ------------------------- methods in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 107 |     pub(crate) fn get_name(&self) -> &str {
[INFO] [stdout]     |                   ^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 111 |     pub(crate) fn get_refid(&self) -> i32 {
[INFO] [stdout]     |                   ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]    Compiling idna v1.0.3
[INFO] [stderr]    Compiling url v2.5.4
[INFO] [stderr]    Compiling rust-htslib v0.39.5
[INFO] [stderr]    Compiling gbam_tools v0.1.0 (/opt/rustwide/workdir/gbam_tools)
[INFO] [stdout] warning: unexpected `cfg` condition value: `python-ffi`
[INFO] [stdout]   --> gbam_tools/src/lib.rs:29:11
[INFO] [stdout]    |
[INFO] [stdout] 29 | #[cfg(not(feature = "python-ffi"))]
[INFO] [stdout]    |           ^^^^^^^^^^^^^^^^^^^^^^ help: remove the condition
[INFO] [stdout]    |
[INFO] [stdout]    = note: no expected values for `feature`
[INFO] [stdout]    = help: consider adding `python-ffi` as a feature in `Cargo.toml`
[INFO] [stdout]    = note: see <https://doc.rust-lang.org/nightly/rustc/check-cfg/cargo-specifics.html> for more information about checking conditional configuration
[INFO] [stdout]    = note: `#[warn(unexpected_cfgs)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unexpected `cfg` condition value: `python-ffi`
[INFO] [stdout]    --> gbam_tools/src/reader/parse_tmplt.rs:138:7
[INFO] [stdout]     |
[INFO] [stdout] 138 | #[cfg(feature = "python-ffi")]
[INFO] [stdout]     |       ^^^^^^^^^^^^^^^^^^^^^^ help: remove the condition
[INFO] [stdout]     |
[INFO] [stdout]     = note: no expected values for `feature`
[INFO] [stdout]     = help: consider adding `python-ffi` as a feature in `Cargo.toml`
[INFO] [stdout]     = note: see <https://doc.rust-lang.org/nightly/rustc/check-cfg/cargo-specifics.html> for more information about checking conditional configuration
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `byteorder::LittleEndian`
[INFO] [stdout]  --> gbam_tools/src/reader/reader.rs:8:5
[INFO] [stdout]   |
[INFO] [stdout] 8 | use byteorder::LittleEndian;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::convert::TryInto`
[INFO] [stdout]  --> gbam_tools/src/query/depth.rs:3:5
[INFO] [stdout]   |
[INFO] [stdout] 3 | use std::convert::TryInto;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `RangeInclusive`
[INFO] [stdout]  --> gbam_tools/src/query/depth.rs:5:16
[INFO] [stdout]   |
[INFO] [stdout] 5 | use std::ops::{RangeInclusive, Range};
[INFO] [stdout]   |                ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around `while` condition
[INFO] [stdout]   --> gbam_tools/src/query/depth.rs:74:10
[INFO] [stdout]    |
[INFO] [stdout] 74 |     while(last_rec - first_rec > 1){
[INFO] [stdout]    |          ^                        ^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_parens)]` on by default
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]    |
[INFO] [stdout] 74 -     while(last_rec - first_rec > 1){
[INFO] [stdout] 74 +     while last_rec - first_rec > 1 {
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `file_meta`
[INFO] [stdout]   --> gbam_tools/src/query/depth.rs:58:55
[INFO] [stdout]    |
[INFO] [stdout] 58 | ...rds: Arc<Vec<DepthUnit>>, file_meta: Arc<FileMeta>, index_file: Option<Arc<Vec<u32>>>, number_of_records: usize, ref_id: i32, mut cove...
[INFO] [stdout]    |                              ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_file_meta`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `number_of_records`
[INFO] [stdout]   --> gbam_tools/src/query/depth.rs:58:116
[INFO] [stdout]    |
[INFO] [stdout] 58 | ...n<Arc<Vec<u32>>>, number_of_records: usize, ref_id: i32, mut coverage_arr: Vec<i32>, ref_len: usize) -> Vec<i32> {
[INFO] [stdout]    |                      ^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_number_of_records`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `file`
[INFO] [stdout]    --> gbam_tools/src/query/depth.rs:278:17
[INFO] [stdout]     |
[INFO] [stdout] 278 |             let file = gbam_file.try_clone().unwrap();
[INFO] [stdout]     |                 ^^^^ help: if this is intentional, prefix it with an underscore: `_file`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `find_leftmost_block` is never used
[INFO] [stdout]    --> gbam_tools/src/query/depth.rs:335:4
[INFO] [stdout]     |
[INFO] [stdout] 335 | fn find_leftmost_block(id: i32, block_metas: &Vec<BlockMeta>) -> Option<i64> {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `find_rightmost_block` is never used
[INFO] [stdout]    --> gbam_tools/src/query/depth.rs:352:4
[INFO] [stdout]     |
[INFO] [stdout] 352 | fn find_rightmost_block(id: i32, block_metas: &Vec<BlockMeta>) -> i64 {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: call to `.clone()` on a reference in this situation does nothing
[INFO] [stdout]   --> gbam_tools/src/bam/bam_to_gbam.rs:73:72
[INFO] [stdout]    |
[INFO] [stdout] 73 |         Some(BufWriter::with_capacity(33_554_432, File::create(out_path.clone().to_owned()+".gbai").unwrap()))
[INFO] [stdout]    |                                                                        ^^^^^^^^ help: remove this redundant call
[INFO] [stdout]    |
[INFO] [stdout]    = note: the type `str` does not implement `Clone`, so calling `clone` on `&str` copies the reference, which does not do anything and can be removed
[INFO] [stdout]    = note: `#[warn(noop_method_call)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]    Compiling gbam_binary v0.1.0 (/opt/rustwide/workdir/gbam_binary)
[INFO] [stdout] warning: function `parse_tag` is never used
[INFO] [stdout]    --> gbam_binary/src/main.rs:301:4
[INFO] [stdout]     |
[INFO] [stdout] 301 | fn parse_tag(tags: &[u8], target_tag: &str) -> Option<String> {
[INFO] [stdout]     |    ^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 40s
[INFO] running `Command { std: "docker" "inspect" "e81d322f31fb7ca8cd8e5a0410c03422dda573d736c0e08d7b679d33b2358bec", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "e81d322f31fb7ca8cd8e5a0410c03422dda573d736c0e08d7b679d33b2358bec", kill_on_drop: false }`
[INFO] [stdout] e81d322f31fb7ca8cd8e5a0410c03422dda573d736c0e08d7b679d33b2358bec
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:819108c5571ea2e421544af4d832f968d213c87fbe3707a016657f43d2f853bc" "/opt/rustwide/cargo-home/bin/cargo" "+nightly-2025-01-18" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 4384da2dbb06be0a1968ca7be5f936ccb20ede57da567e448ac8e6be4f6d28ad
[INFO] running `Command { std: "docker" "start" "-a" "4384da2dbb06be0a1968ca7be5f936ccb20ede57da567e448ac8e6be4f6d28ad", kill_on_drop: false }`
[INFO] [stdout] warning: elided lifetime has a name
[INFO] [stdout]   --> bam_tools/src/reader/records.rs:16:58
[INFO] [stdout]    |
[INFO] [stdout] 15 | impl<'a> Records<'a> {
[INFO] [stdout]    |      -- lifetime `'a` declared here
[INFO] [stdout] 16 |     pub(crate) fn new(reader: &'a mut Reader) -> Records<'_> {
[INFO] [stdout]    |                                                          ^^ this elided lifetime gets resolved as `'a`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(elided_named_lifetimes)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> bam_tools/src/sorting/sort.rs:108:5
[INFO] [stdout]     |
[INFO] [stdout] 108 |     mut writer: &mut W,
[INFO] [stdout]     |     ----^^^^^^
[INFO] [stdout]     |     |
[INFO] [stdout]     |     help: remove this `mut`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_mut)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> bam_tools/src/sorting/sort.rs:109:5
[INFO] [stdout]     |
[INFO] [stdout] 109 |     mut index_writer: &mut IndexW,
[INFO] [stdout]     |     ----^^^^^^^^^^^^
[INFO] [stdout]     |     |
[INFO] [stdout]     |     help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> bam_tools/src/sorting/sort.rs:146:5
[INFO] [stdout]     |
[INFO] [stdout] 146 |     mut index_file_to_create: Option<IndexW>,
[INFO] [stdout]     |     ----^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |     |
[INFO] [stdout]     |     help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `track_progress` is never read
[INFO] [stdout]   --> bam_tools/src/reader.rs:22:5
[INFO] [stdout]    |
[INFO] [stdout] 17 | pub struct Reader {
[INFO] [stdout]    |            ------ field in this struct
[INFO] [stdout] ...
[INFO] [stdout] 22 |     track_progress: Option<u64>,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: methods `get_name` and `get_refid` are never used
[INFO] [stdout]    --> bam_tools/src/record/bamrawrecord.rs:107:19
[INFO] [stdout]     |
[INFO] [stdout] 15  | impl<'a> BAMRawRecord<'a> {
[INFO] [stdout]     | ------------------------- methods in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 107 |     pub(crate) fn get_name(&self) -> &str {
[INFO] [stdout]     |                   ^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 111 |     pub(crate) fn get_refid(&self) -> i32 {
[INFO] [stdout]     |                   ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unexpected `cfg` condition value: `python-ffi`
[INFO] [stdout]   --> gbam_tools/src/lib.rs:29:11
[INFO] [stdout]    |
[INFO] [stdout] 29 | #[cfg(not(feature = "python-ffi"))]
[INFO] [stdout]    |           ^^^^^^^^^^^^^^^^^^^^^^ help: remove the condition
[INFO] [stdout]    |
[INFO] [stdout]    = note: no expected values for `feature`
[INFO] [stdout]    = help: consider adding `python-ffi` as a feature in `Cargo.toml`
[INFO] [stdout]    = note: see <https://doc.rust-lang.org/nightly/rustc/check-cfg/cargo-specifics.html> for more information about checking conditional configuration
[INFO] [stdout]    = note: `#[warn(unexpected_cfgs)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unexpected `cfg` condition value: `python-ffi`
[INFO] [stdout]    --> gbam_tools/src/reader/parse_tmplt.rs:138:7
[INFO] [stdout]     |
[INFO] [stdout] 138 | #[cfg(feature = "python-ffi")]
[INFO] [stdout]     |       ^^^^^^^^^^^^^^^^^^^^^^ help: remove the condition
[INFO] [stdout]     |
[INFO] [stdout]     = note: no expected values for `feature`
[INFO] [stdout]     = help: consider adding `python-ffi` as a feature in `Cargo.toml`
[INFO] [stdout]     = note: see <https://doc.rust-lang.org/nightly/rustc/check-cfg/cargo-specifics.html> for more information about checking conditional configuration
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]    Compiling gbam_tools v0.1.0 (/opt/rustwide/workdir/gbam_tools)
[INFO] [stderr]    Compiling bam_tools v0.1.0 (/opt/rustwide/workdir/bam_tools)
[INFO] [stderr]    Compiling gbam_binary v0.1.0 (/opt/rustwide/workdir/gbam_binary)
[INFO] [stdout] warning: unused import: `byteorder::LittleEndian`
[INFO] [stdout]  --> gbam_tools/src/reader/reader.rs:8:5
[INFO] [stdout]   |
[INFO] [stdout] 8 | use byteorder::LittleEndian;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::convert::TryInto`
[INFO] [stdout]  --> gbam_tools/src/query/depth.rs:3:5
[INFO] [stdout]   |
[INFO] [stdout] 3 | use std::convert::TryInto;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `RangeInclusive`
[INFO] [stdout]  --> gbam_tools/src/query/depth.rs:5:16
[INFO] [stdout]   |
[INFO] [stdout] 5 | use std::ops::{RangeInclusive, Range};
[INFO] [stdout]   |                ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around `while` condition
[INFO] [stdout]   --> gbam_tools/src/query/depth.rs:74:10
[INFO] [stdout]    |
[INFO] [stdout] 74 |     while(last_rec - first_rec > 1){
[INFO] [stdout]    |          ^                        ^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_parens)]` on by default
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]    |
[INFO] [stdout] 74 -     while(last_rec - first_rec > 1){
[INFO] [stdout] 74 +     while last_rec - first_rec > 1 {
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `file_meta`
[INFO] [stdout]   --> gbam_tools/src/query/depth.rs:58:55
[INFO] [stdout]    |
[INFO] [stdout] 58 | ...rds: Arc<Vec<DepthUnit>>, file_meta: Arc<FileMeta>, index_file: Option<Arc<Vec<u32>>>, number_of_records: usize, ref_id: i32, mut cove...
[INFO] [stdout]    |                              ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_file_meta`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `number_of_records`
[INFO] [stdout]   --> gbam_tools/src/query/depth.rs:58:116
[INFO] [stdout]    |
[INFO] [stdout] 58 | ...n<Arc<Vec<u32>>>, number_of_records: usize, ref_id: i32, mut coverage_arr: Vec<i32>, ref_len: usize) -> Vec<i32> {
[INFO] [stdout]    |                      ^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_number_of_records`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `file`
[INFO] [stdout]    --> gbam_tools/src/query/depth.rs:278:17
[INFO] [stdout]     |
[INFO] [stdout] 278 |             let file = gbam_file.try_clone().unwrap();
[INFO] [stdout]     |                 ^^^^ help: if this is intentional, prefix it with an underscore: `_file`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `find_leftmost_block` is never used
[INFO] [stdout]    --> gbam_tools/src/query/depth.rs:335:4
[INFO] [stdout]     |
[INFO] [stdout] 335 | fn find_leftmost_block(id: i32, block_metas: &Vec<BlockMeta>) -> Option<i64> {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `find_rightmost_block` is never used
[INFO] [stdout]    --> gbam_tools/src/query/depth.rs:352:4
[INFO] [stdout]     |
[INFO] [stdout] 352 | fn find_rightmost_block(id: i32, block_metas: &Vec<BlockMeta>) -> i64 {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: call to `.clone()` on a reference in this situation does nothing
[INFO] [stdout]   --> gbam_tools/src/bam/bam_to_gbam.rs:73:72
[INFO] [stdout]    |
[INFO] [stdout] 73 |         Some(BufWriter::with_capacity(33_554_432, File::create(out_path.clone().to_owned()+".gbai").unwrap()))
[INFO] [stdout]    |                                                                        ^^^^^^^^ help: remove this redundant call
[INFO] [stdout]    |
[INFO] [stdout]    = note: the type `str` does not implement `Clone`, so calling `clone` on `&str` copies the reference, which does not do anything and can be removed
[INFO] [stdout]    = note: `#[warn(noop_method_call)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: elided lifetime has a name
[INFO] [stdout]   --> bam_tools/src/reader/records.rs:16:58
[INFO] [stdout]    |
[INFO] [stdout] 15 | impl<'a> Records<'a> {
[INFO] [stdout]    |      -- lifetime `'a` declared here
[INFO] [stdout] 16 |     pub(crate) fn new(reader: &'a mut Reader) -> Records<'_> {
[INFO] [stdout]    |                                                          ^^ this elided lifetime gets resolved as `'a`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(elided_named_lifetimes)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unexpected `cfg` condition value: `python-ffi`
[INFO] [stdout]   --> gbam_tools/src/lib.rs:29:11
[INFO] [stdout]    |
[INFO] [stdout] 29 | #[cfg(not(feature = "python-ffi"))]
[INFO] [stdout]    |           ^^^^^^^^^^^^^^^^^^^^^^ help: remove the condition
[INFO] [stdout]    |
[INFO] [stdout]    = note: no expected values for `feature`
[INFO] [stdout]    = help: consider adding `python-ffi` as a feature in `Cargo.toml`
[INFO] [stdout]    = note: see <https://doc.rust-lang.org/nightly/rustc/check-cfg/cargo-specifics.html> for more information about checking conditional configuration
[INFO] [stdout]    = note: `#[warn(unexpected_cfgs)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unexpected `cfg` condition value: `python-ffi`
[INFO] [stdout]    --> gbam_tools/src/reader/parse_tmplt.rs:138:7
[INFO] [stdout]     |
[INFO] [stdout] 138 | #[cfg(feature = "python-ffi")]
[INFO] [stdout]     |       ^^^^^^^^^^^^^^^^^^^^^^ help: remove the condition
[INFO] [stdout]     |
[INFO] [stdout]     = note: no expected values for `feature`
[INFO] [stdout]     = help: consider adding `python-ffi` as a feature in `Cargo.toml`
[INFO] [stdout]     = note: see <https://doc.rust-lang.org/nightly/rustc/check-cfg/cargo-specifics.html> for more information about checking conditional configuration
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `byteorder::LittleEndian`
[INFO] [stdout]  --> gbam_tools/src/reader/reader.rs:8:5
[INFO] [stdout]   |
[INFO] [stdout] 8 | use byteorder::LittleEndian;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::convert::TryInto`
[INFO] [stdout]  --> gbam_tools/src/query/depth.rs:3:5
[INFO] [stdout]   |
[INFO] [stdout] 3 | use std::convert::TryInto;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `RangeInclusive`
[INFO] [stdout]  --> gbam_tools/src/query/depth.rs:5:16
[INFO] [stdout]   |
[INFO] [stdout] 5 | use std::ops::{RangeInclusive, Range};
[INFO] [stdout]   |                ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around `while` condition
[INFO] [stdout]   --> gbam_tools/src/query/depth.rs:74:10
[INFO] [stdout]    |
[INFO] [stdout] 74 |     while(last_rec - first_rec > 1){
[INFO] [stdout]    |          ^                        ^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_parens)]` on by default
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]    |
[INFO] [stdout] 74 -     while(last_rec - first_rec > 1){
[INFO] [stdout] 74 +     while last_rec - first_rec > 1 {
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> bam_tools/src/sorting/sort.rs:108:5
[INFO] [stdout]     |
[INFO] [stdout] 108 |     mut writer: &mut W,
[INFO] [stdout]     |     ----^^^^^^
[INFO] [stdout]     |     |
[INFO] [stdout]     |     help: remove this `mut`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_mut)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> bam_tools/src/sorting/sort.rs:109:5
[INFO] [stdout]     |
[INFO] [stdout] 109 |     mut index_writer: &mut IndexW,
[INFO] [stdout]     |     ----^^^^^^^^^^^^
[INFO] [stdout]     |     |
[INFO] [stdout]     |     help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> bam_tools/src/sorting/sort.rs:146:5
[INFO] [stdout]     |
[INFO] [stdout] 146 |     mut index_file_to_create: Option<IndexW>,
[INFO] [stdout]     |     ----^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |     |
[INFO] [stdout]     |     help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `track_progress` is never read
[INFO] [stdout]   --> bam_tools/src/reader.rs:22:5
[INFO] [stdout]    |
[INFO] [stdout] 17 | pub struct Reader {
[INFO] [stdout]    |            ------ field in this struct
[INFO] [stdout] ...
[INFO] [stdout] 22 |     track_progress: Option<u64>,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: methods `get_name` and `get_refid` are never used
[INFO] [stdout]    --> bam_tools/src/record/bamrawrecord.rs:107:19
[INFO] [stdout]     |
[INFO] [stdout] 15  | impl<'a> BAMRawRecord<'a> {
[INFO] [stdout]     | ------------------------- methods in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 107 |     pub(crate) fn get_name(&self) -> &str {
[INFO] [stdout]     |                   ^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 111 |     pub(crate) fn get_refid(&self) -> i32 {
[INFO] [stdout]     |                   ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `file_meta`
[INFO] [stdout]   --> gbam_tools/src/query/depth.rs:58:55
[INFO] [stdout]    |
[INFO] [stdout] 58 | ...rds: Arc<Vec<DepthUnit>>, file_meta: Arc<FileMeta>, index_file: Option<Arc<Vec<u32>>>, number_of_records: usize, ref_id: i32, mut cove...
[INFO] [stdout]    |                              ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_file_meta`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `number_of_records`
[INFO] [stdout]   --> gbam_tools/src/query/depth.rs:58:116
[INFO] [stdout]    |
[INFO] [stdout] 58 | ...n<Arc<Vec<u32>>>, number_of_records: usize, ref_id: i32, mut coverage_arr: Vec<i32>, ref_len: usize) -> Vec<i32> {
[INFO] [stdout]    |                      ^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_number_of_records`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `file`
[INFO] [stdout]    --> gbam_tools/src/query/depth.rs:278:17
[INFO] [stdout]     |
[INFO] [stdout] 278 |             let file = gbam_file.try_clone().unwrap();
[INFO] [stdout]     |                 ^^^^ help: if this is intentional, prefix it with an underscore: `_file`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `find_leftmost_block` is never used
[INFO] [stdout]    --> gbam_tools/src/query/depth.rs:335:4
[INFO] [stdout]     |
[INFO] [stdout] 335 | fn find_leftmost_block(id: i32, block_metas: &Vec<BlockMeta>) -> Option<i64> {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `find_rightmost_block` is never used
[INFO] [stdout]    --> gbam_tools/src/query/depth.rs:352:4
[INFO] [stdout]     |
[INFO] [stdout] 352 | fn find_rightmost_block(id: i32, block_metas: &Vec<BlockMeta>) -> i64 {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: call to `.clone()` on a reference in this situation does nothing
[INFO] [stdout]   --> gbam_tools/src/bam/bam_to_gbam.rs:73:72
[INFO] [stdout]    |
[INFO] [stdout] 73 |         Some(BufWriter::with_capacity(33_554_432, File::create(out_path.clone().to_owned()+".gbai").unwrap()))
[INFO] [stdout]    |                                                                        ^^^^^^^^ help: remove this redundant call
[INFO] [stdout]    |
[INFO] [stdout]    = note: the type `str` does not implement `Clone`, so calling `clone` on `&str` copies the reference, which does not do anything and can be removed
[INFO] [stdout]    = note: `#[warn(noop_method_call)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 2.66s
[INFO] running `Command { std: "docker" "inspect" "4384da2dbb06be0a1968ca7be5f936ccb20ede57da567e448ac8e6be4f6d28ad", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4384da2dbb06be0a1968ca7be5f936ccb20ede57da567e448ac8e6be4f6d28ad", kill_on_drop: false }`
[INFO] [stdout] 4384da2dbb06be0a1968ca7be5f936ccb20ede57da567e448ac8e6be4f6d28ad
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:819108c5571ea2e421544af4d832f968d213c87fbe3707a016657f43d2f853bc" "/opt/rustwide/cargo-home/bin/cargo" "+nightly-2025-01-18" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] c2e92a2223d666db09d093a4f8e7b39e5e664438e749589ff7760486f2bc20b2
[INFO] running `Command { std: "docker" "start" "-a" "c2e92a2223d666db09d093a4f8e7b39e5e664438e749589ff7760486f2bc20b2", kill_on_drop: false }`
[INFO] [stderr] warning: elided lifetime has a name
[INFO] [stderr]   --> bam_tools/src/reader/records.rs:16:58
[INFO] [stderr]    |
[INFO] [stderr] 15 | impl<'a> Records<'a> {
[INFO] [stderr]    |      -- lifetime `'a` declared here
[INFO] [stderr] 16 |     pub(crate) fn new(reader: &'a mut Reader) -> Records<'_> {
[INFO] [stderr]    |                                                          ^^ this elided lifetime gets resolved as `'a`
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(elided_named_lifetimes)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: variable does not need to be mutable
[INFO] [stderr]    --> bam_tools/src/sorting/sort.rs:108:5
[INFO] [stderr]     |
[INFO] [stderr] 108 |     mut writer: &mut W,
[INFO] [stderr]     |     ----^^^^^^
[INFO] [stderr]     |     |
[INFO] [stderr]     |     help: remove this `mut`
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(unused_mut)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: variable does not need to be mutable
[INFO] [stderr]    --> bam_tools/src/sorting/sort.rs:109:5
[INFO] [stderr]     |
[INFO] [stderr] 109 |     mut index_writer: &mut IndexW,
[INFO] [stderr]     |     ----^^^^^^^^^^^^
[INFO] [stderr]     |     |
[INFO] [stderr]     |     help: remove this `mut`
[INFO] [stderr] 
[INFO] [stderr] warning: variable does not need to be mutable
[INFO] [stderr]    --> bam_tools/src/sorting/sort.rs:146:5
[INFO] [stderr]     |
[INFO] [stderr] 146 |     mut index_file_to_create: Option<IndexW>,
[INFO] [stderr]     |     ----^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]     |     |
[INFO] [stderr]     |     help: remove this `mut`
[INFO] [stderr] 
[INFO] [stderr] warning: field `track_progress` is never read
[INFO] [stderr]   --> bam_tools/src/reader.rs:22:5
[INFO] [stderr]    |
[INFO] [stderr] 17 | pub struct Reader {
[INFO] [stderr]    |            ------ field in this struct
[INFO] [stderr] ...
[INFO] [stderr] 22 |     track_progress: Option<u64>,
[INFO] [stderr]    |     ^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(dead_code)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: methods `get_name` and `get_refid` are never used
[INFO] [stderr]    --> bam_tools/src/record/bamrawrecord.rs:107:19
[INFO] [stderr]     |
[INFO] [stderr] 15  | impl<'a> BAMRawRecord<'a> {
[INFO] [stderr]     | ------------------------- methods in this implementation
[INFO] [stderr] ...
[INFO] [stderr] 107 |     pub(crate) fn get_name(&self) -> &str {
[INFO] [stderr]     |                   ^^^^^^^^
[INFO] [stderr] ...
[INFO] [stderr] 111 |     pub(crate) fn get_refid(&self) -> i32 {
[INFO] [stderr]     |                   ^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: `bam_tools` (lib) generated 6 warnings (run `cargo fix --lib -p bam_tools` to apply 3 suggestions)
[INFO] [stderr] warning: unexpected `cfg` condition value: `python-ffi`
[INFO] [stderr]   --> gbam_tools/src/lib.rs:29:11
[INFO] [stderr]    |
[INFO] [stderr] 29 | #[cfg(not(feature = "python-ffi"))]
[INFO] [stderr]    |           ^^^^^^^^^^^^^^^^^^^^^^ help: remove the condition
[INFO] [stderr]    |
[INFO] [stderr]    = note: no expected values for `feature`
[INFO] [stderr]    = help: consider adding `python-ffi` as a feature in `Cargo.toml`
[INFO] [stderr]    = note: see <https://doc.rust-lang.org/nightly/rustc/check-cfg/cargo-specifics.html> for more information about checking conditional configuration
[INFO] [stderr]    = note: `#[warn(unexpected_cfgs)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unexpected `cfg` condition value: `python-ffi`
[INFO] [stderr]    --> gbam_tools/src/reader/parse_tmplt.rs:138:7
[INFO] [stderr]     |
[INFO] [stderr] 138 | #[cfg(feature = "python-ffi")]
[INFO] [stderr]     |       ^^^^^^^^^^^^^^^^^^^^^^ help: remove the condition
[INFO] [stderr]     |
[INFO] [stderr]     = note: no expected values for `feature`
[INFO] [stderr]     = help: consider adding `python-ffi` as a feature in `Cargo.toml`
[INFO] [stderr]     = note: see <https://doc.rust-lang.org/nightly/rustc/check-cfg/cargo-specifics.html> for more information about checking conditional configuration
[INFO] [stderr] 
[INFO] [stderr] warning: unused import: `byteorder::LittleEndian`
[INFO] [stderr]  --> gbam_tools/src/reader/reader.rs:8:5
[INFO] [stderr]   |
[INFO] [stderr] 8 | use byteorder::LittleEndian;
[INFO] [stderr]   |     ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unused import: `std::convert::TryInto`
[INFO] [stderr]  --> gbam_tools/src/query/depth.rs:3:5
[INFO] [stderr]   |
[INFO] [stderr] 3 | use std::convert::TryInto;
[INFO] [stderr]   |     ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: unused import: `RangeInclusive`
[INFO] [stderr]  --> gbam_tools/src/query/depth.rs:5:16
[INFO] [stderr]   |
[INFO] [stderr] 5 | use std::ops::{RangeInclusive, Range};
[INFO] [stderr]   |                ^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: unnecessary parentheses around `while` condition
[INFO] [stderr]   --> gbam_tools/src/query/depth.rs:74:10
[INFO] [stderr]    |
[INFO] [stderr] 74 |     while(last_rec - first_rec > 1){
[INFO] [stderr]    |          ^                        ^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(unused_parens)]` on by default
[INFO] [stderr] help: remove these parentheses
[INFO] [stderr]    |
[INFO] [stderr] 74 -     while(last_rec - first_rec > 1){
[INFO] [stderr] 74 +     while last_rec - first_rec > 1 {
[INFO] [stderr]    |
[INFO] [stderr] 
[INFO] [stderr] warning: unused variable: `file_meta`
[INFO] [stderr]   --> gbam_tools/src/query/depth.rs:58:55
[INFO] [stderr]    |
[INFO] [stderr] 58 | ...rds: Arc<Vec<DepthUnit>>, file_meta: Arc<FileMeta>, index_file: Option<Arc<Vec<u32>>>, number_of_records: usize, ref_id: i32, mut cove...
[INFO] [stderr]    |                              ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_file_meta`
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(unused_variables)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unused variable: `number_of_records`
[INFO] [stderr]   --> gbam_tools/src/query/depth.rs:58:116
[INFO] [stderr]    |
[INFO] [stderr] 58 | ...n<Arc<Vec<u32>>>, number_of_records: usize, ref_id: i32, mut coverage_arr: Vec<i32>, ref_len: usize) -> Vec<i32> {
[INFO] [stderr]    |                      ^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_number_of_records`
[INFO] [stderr] 
[INFO] [stderr] warning: unused variable: `file`
[INFO] [stderr]    --> gbam_tools/src/query/depth.rs:278:17
[INFO] [stderr]     |
[INFO] [stderr] 278 |             let file = gbam_file.try_clone().unwrap();
[INFO] [stderr]     |                 ^^^^ help: if this is intentional, prefix it with an underscore: `_file`
[INFO] [stderr] 
[INFO] [stderr] warning: function `find_leftmost_block` is never used
[INFO] [stderr]    --> gbam_tools/src/query/depth.rs:335:4
[INFO] [stderr]     |
[INFO] [stderr] 335 | fn find_leftmost_block(id: i32, block_metas: &Vec<BlockMeta>) -> Option<i64> {
[INFO] [stderr]     |    ^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(dead_code)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: function `find_rightmost_block` is never used
[INFO] [stderr]    --> gbam_tools/src/query/depth.rs:352:4
[INFO] [stderr]     |
[INFO] [stderr] 352 | fn find_rightmost_block(id: i32, block_metas: &Vec<BlockMeta>) -> i64 {
[INFO] [stderr]     |    ^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: call to `.clone()` on a reference in this situation does nothing
[INFO] [stderr]   --> gbam_tools/src/bam/bam_to_gbam.rs:73:72
[INFO] [stderr]    |
[INFO] [stderr] 73 |         Some(BufWriter::with_capacity(33_554_432, File::create(out_path.clone().to_owned()+".gbai").unwrap()))
[INFO] [stderr]    |                                                                        ^^^^^^^^ help: remove this redundant call
[INFO] [stderr]    |
[INFO] [stderr]    = note: the type `str` does not implement `Clone`, so calling `clone` on `&str` copies the reference, which does not do anything and can be removed
[INFO] [stderr]    = note: `#[warn(noop_method_call)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: `gbam_tools` (lib) generated 12 warnings (run `cargo fix --lib -p gbam_tools` to apply 5 suggestions)
[INFO] [stderr] warning: `gbam_tools` (lib test) generated 12 warnings (12 duplicates)
[INFO] [stderr] warning: `bam_tools` (lib test) generated 6 warnings (6 duplicates)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.19s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/bam_tools-78432a01aeb87b80)
[INFO] [stdout] 
[INFO] [stdout] running 13 tests
[INFO] [stdout] test block::tests::test_data_mut ... ok
[INFO] [stdout] test block::tests::test_set_len ... ok
[INFO] [stdout] test block::tests::test_is_eof ... ok
[INFO] [stdout] test block::tests::test_virtual_position ... ok
[INFO] [stdout] test virtual_position::tests::test_from_u64_for_virtual_position ... ok
[INFO] [stdout] test sorting::flags::tests::test_from_u16_for_flags ... ok
[INFO] [stdout] test virtual_position::tests::test_from_virtual_position_for_u64 ... ok
[INFO] [stdout] test sorting::flags::tests::test_contains ... ok
[INFO] [stdout] test block::tests::test_set_position ... ok
[INFO] [stdout] test virtual_position::tests::test_try_from_u64_u16_tuple_for_virtual_position ... ok
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/gbam_binary-9e1e6dfae658f51e)
[INFO] [stdout] test sorting::flags::tests::test_from_flags_for_u16 ... ok
[INFO] [stdout] test virtual_position::tests::test_from_virtual_position_for_u64_u16_tuple ... ok
[INFO] [stdout] test sorting::flags::tests::test_default ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 13 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 9 tests
[INFO] [stdout] test tests::test_parse_tag_with_empty_target_tag ... ok
[INFO] [stdout] test tests::test_parse_tag_with_longer_tag ... ok
[INFO] [stdout] test tests::test_parse_tag_with_multiple_tags ... ok
[INFO] [stdout] test tests::test_parse_tag_with_no_null_terminator ... ok
[INFO] [stdout] test tests::test_parse_tag_with_empty_tags ... ok
[INFO] [stdout] test tests::test_parse_tag_with_partial_tag_match ... ok
[INFO] [stdout] test tests::test_parse_tag_with_null_terminator_at_end ... ok
[INFO] [stdout] test tests::test_parse_tag_with_nonexistent_tag ... ok
[INFO] [stdout] test tests::test_parse_tag_with_exact_match ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 9 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/gbam_tools-7a92be2910a50182)
[INFO] [stdout] 
[INFO] [stdout] running 2 tests
[INFO] [stdout] test utils::bed::tests::test_region_query ... ok
[INFO] [stdout] test utils::bed::tests::test_bed_reader ... FAILED
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout] 
[INFO] [stdout] ---- utils::bed::tests::test_bed_reader stdout ----
[INFO] [stdout] 
[INFO] [stdout] thread 'utils::bed::tests::test_bed_reader' panicked at gbam_tools/src/utils/bed.rs:112:42:
[INFO] [stdout] called `Result::unwrap()` on an `Err` value: Kind(InvalidData)
[INFO] [stdout] stack backtrace:
[INFO] [stdout]    0:     0x5ec68c0ea38a - std::backtrace_rs::backtrace::libunwind::trace::hb059275cfc8d6126
[INFO] [stdout]                                at /rustc/6067b36314ab5eb2eb47cecc464545ba58e1ad24/library/std/src/../../backtrace/src/backtrace/libunwind.rs:116:5
[INFO] [stdout]    1:     0x5ec68c0ea38a - std::backtrace_rs::backtrace::trace_unsynchronized::h2da071e4327ce3ee
[INFO] [stdout]                                at /rustc/6067b36314ab5eb2eb47cecc464545ba58e1ad24/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5
[INFO] [stdout]    2:     0x5ec68c0ea38a - std::sys::backtrace::_print_fmt::h842a1474e6f8d23f
[INFO] [stdout]                                at /rustc/6067b36314ab5eb2eb47cecc464545ba58e1ad24/library/std/src/sys/backtrace.rs:66:9
[INFO] [stdout]    3:     0x5ec68c0ea38a - <std::sys::backtrace::BacktraceLock::print::DisplayBacktrace as core::fmt::Display>::fmt::h71a62eb3b9696b12
[INFO] [stdout]                                at /rustc/6067b36314ab5eb2eb47cecc464545ba58e1ad24/library/std/src/sys/backtrace.rs:39:26
[INFO] [stdout]    4:     0x5ec68c111953 - core::fmt::rt::Argument::fmt::hdb6b616786b41dc1
[INFO] [stdout]                                at /rustc/6067b36314ab5eb2eb47cecc464545ba58e1ad24/library/core/src/fmt/rt.rs:177:76
[INFO] [stdout]    5:     0x5ec68c111953 - core::fmt::write::h2cc1698af7e2d686
[INFO] [stdout]                                at /rustc/6067b36314ab5eb2eb47cecc464545ba58e1ad24/library/core/src/fmt/mod.rs:1440:21
[INFO] [stdout]    6:     0x5ec68c0e6ee3 - std::io::Write::write_fmt::hab1b4cd059a79022
[INFO] [stdout]                                at /rustc/6067b36314ab5eb2eb47cecc464545ba58e1ad24/library/std/src/io/mod.rs:1887:15
[INFO] [stdout]    7:     0x5ec68c0ea1d2 - std::sys::backtrace::BacktraceLock::print::h147fe35b4ea13b08
[INFO] [stdout]                                at /rustc/6067b36314ab5eb2eb47cecc464545ba58e1ad24/library/std/src/sys/backtrace.rs:42:9
[INFO] [stdout]    8:     0x5ec68c0eb7af - std::panicking::default_hook::{{closure}}::hbd44223dbdc0d208
[INFO] [stdout]                                at /rustc/6067b36314ab5eb2eb47cecc464545ba58e1ad24/library/std/src/panicking.rs:298:22
[INFO] [stdout]    9:     0x5ec68c0eb5c8 - std::panicking::default_hook::h20f81eb0576efcec
[INFO] [stdout]                                at /rustc/6067b36314ab5eb2eb47cecc464545ba58e1ad24/library/std/src/panicking.rs:322:9
[INFO] [stdout]   10:     0x5ec68c0a88c3 - <alloc::boxed::Box<F,A> as core::ops::function::Fn<Args>>::call::hdb53814c496a4d34
[INFO] [stdout]                                at /rustc/6067b36314ab5eb2eb47cecc464545ba58e1ad24/library/alloc/src/boxed.rs:2027:9
[INFO] [stdout]   11:     0x5ec68c0a88c3 - test::test_main::{{closure}}::hc0a4963c59427c24
[INFO] [stdout]                                at /rustc/6067b36314ab5eb2eb47cecc464545ba58e1ad24/library/test/src/lib.rs:134:21
[INFO] [stdout]   12:     0x5ec68c0ec2a3 - <alloc::boxed::Box<F,A> as core::ops::function::Fn<Args>>::call::h591b2225413a77e9
[INFO] [stdout]                                at /rustc/6067b36314ab5eb2eb47cecc464545ba58e1ad24/library/alloc/src/boxed.rs:2027:9
[INFO] [stdout]   13:     0x5ec68c0ec2a3 - std::panicking::rust_panic_with_hook::h625eea43051b2edc
[INFO] [stdout]                                at /rustc/6067b36314ab5eb2eb47cecc464545ba58e1ad24/library/std/src/panicking.rs:839:13
[INFO] [stdout]   14:     0x5ec68c0ebf5a - std::panicking::begin_panic_handler::{{closure}}::h4f9159cfbc3f6bd3
[INFO] [stdout]                                at /rustc/6067b36314ab5eb2eb47cecc464545ba58e1ad24/library/std/src/panicking.rs:704:13
[INFO] [stdout]   15:     0x5ec68c0ea889 - std::sys::backtrace::__rust_end_short_backtrace::h0390abce48353151
[INFO] [stdout]                                at /rustc/6067b36314ab5eb2eb47cecc464545ba58e1ad24/library/std/src/sys/backtrace.rs:168:18
[INFO] [stdout]   16:     0x5ec68c0ebbed - rust_begin_unwind
[INFO] [stdout]                                at /rustc/6067b36314ab5eb2eb47cecc464545ba58e1ad24/library/std/src/panicking.rs:695:5
[INFO] [stdout]   17:     0x5ec68c110400 - core::panicking::panic_fmt::h9e7c637e9e5f29c9
[INFO] [stdout]                                at /rustc/6067b36314ab5eb2eb47cecc464545ba58e1ad24/library/core/src/panicking.rs:75:14
[INFO] [stdout]   18:     0x5ec68c1107a6 - core::result::unwrap_failed::h7979f09313fe1849
[INFO] [stdout]                                at /rustc/6067b36314ab5eb2eb47cecc464545ba58e1ad24/library/core/src/result.rs:1704:5
[INFO] [stdout]   19:     0x5ec68c06e496 - core::result::Result<T,E>::unwrap::h9a4ff0850f0b82f0
[INFO] [stdout]                                at /rustc/6067b36314ab5eb2eb47cecc464545ba58e1ad24/library/core/src/result.rs:1109:23
[INFO] [stdout]   20:     0x5ec68c06e496 - gbam_tools::utils::bed::tests::test_bed_reader::h60d92431a15b8b4d
[INFO] [stdout]                                at /opt/rustwide/workdir/gbam_tools/src/utils/bed.rs:112:19
[INFO] [stdout]   21:     0x5ec68c06e3d7 - gbam_tools::utils::bed::tests::test_bed_reader::{{closure}}::hc9ebf0b7cb8f8e7b
[INFO] [stdout]                                at /opt/rustwide/workdir/gbam_tools/src/utils/bed.rs:106:25
[INFO] [stdout]   22:     0x5ec68c06b616 - core::ops::function::FnOnce::call_once::he7d3ab2bc8cb2ad4
[INFO] [stdout]                                at /rustc/6067b36314ab5eb2eb47cecc464545ba58e1ad24/library/core/src/ops/function.rs:250:5
[INFO] [stdout]   23:     0x5ec68c0ae01b - core::ops::function::FnOnce::call_once::he27718dfdd183f43
[INFO] [stdout]                                at /rustc/6067b36314ab5eb2eb47cecc464545ba58e1ad24/library/core/src/ops/function.rs:250:5
[INFO] [stdout]   24:     0x5ec68c0ae01b - test::__rust_begin_short_backtrace::h4e84902998457a5d
[INFO] [stdout]                                at /rustc/6067b36314ab5eb2eb47cecc464545ba58e1ad24/library/test/src/lib.rs:632:18
[INFO] [stdout]   25:     0x5ec68c0acf53 - test::run_test_in_process::{{closure}}::h7176fd18fc1feca0
[INFO] [stdout]                                at /rustc/6067b36314ab5eb2eb47cecc464545ba58e1ad24/library/test/src/lib.rs:655:60
[INFO] [stdout]   26:     0x5ec68c0acf53 - <core::panic::unwind_safe::AssertUnwindSafe<F> as core::ops::function::FnOnce<()>>::call_once::hf79cff2a624d8cf7
[INFO] [stdout]                                at /rustc/6067b36314ab5eb2eb47cecc464545ba58e1ad24/library/core/src/panic/unwind_safe.rs:272:9
[INFO] [stdout]   27:     0x5ec68c0acf53 - std::panicking::try::do_call::h3da0561d9ab99c25
[INFO] [stdout]                                at /rustc/6067b36314ab5eb2eb47cecc464545ba58e1ad24/library/std/src/panicking.rs:587:40
[INFO] [stdout]   28:     0x5ec68c0acf53 - std::panicking::try::h41c9fa508bc61df6
[INFO] [stdout]                                at /rustc/6067b36314ab5eb2eb47cecc464545ba58e1ad24/library/std/src/panicking.rs:550:19
[INFO] [stdout]   29:     0x5ec68c0acf53 - std::panic::catch_unwind::h6b3ff07bb5afad93
[INFO] [stdout]                                at /rustc/6067b36314ab5eb2eb47cecc464545ba58e1ad24/library/std/src/panic.rs:358:14
[INFO] [stdout]   30:     0x5ec68c0acf53 - test::run_test_in_process::hc7253dd11b39b9f4
[INFO] [stdout]                                at /rustc/6067b36314ab5eb2eb47cecc464545ba58e1ad24/library/test/src/lib.rs:655:27
[INFO] [stdout]   31:     0x5ec68c0acf53 - test::run_test::{{closure}}::hfb2007f8649c30bb
[INFO] [stdout]                                at /rustc/6067b36314ab5eb2eb47cecc464545ba58e1ad24/library/test/src/lib.rs:576:43
[INFO] [stdout]   32:     0x5ec68c070035 - test::run_test::{{closure}}::h56a17aa7a282a9f4
[INFO] [stdout]                                at /rustc/6067b36314ab5eb2eb47cecc464545ba58e1ad24/library/test/src/lib.rs:606:41
[INFO] [stdout]   33:     0x5ec68c070035 - std::sys::backtrace::__rust_begin_short_backtrace::hd2d2d2fb8e8c6aac
[INFO] [stdout]                                at /rustc/6067b36314ab5eb2eb47cecc464545ba58e1ad24/library/std/src/sys/backtrace.rs:152:18
[INFO] [stdout]   34:     0x5ec68c07391a - std::thread::Builder::spawn_unchecked_::{{closure}}::{{closure}}::h4faa3f9db6133423
[INFO] [stdout]                                at /rustc/6067b36314ab5eb2eb47cecc464545ba58e1ad24/library/std/src/thread/mod.rs:559:17
[INFO] [stdout]   35:     0x5ec68c07391a - <core::panic::unwind_safe::AssertUnwindSafe<F> as core::ops::function::FnOnce<()>>::call_once::hf2e855a36a4ea846
[INFO] [stdout]                                at /rustc/6067b36314ab5eb2eb47cecc464545ba58e1ad24/library/core/src/panic/unwind_safe.rs:272:9
[INFO] [stdout]   36:     0x5ec68c07391a - std::panicking::try::do_call::h2f73af3616c35465
[INFO] [stdout]                                at /rustc/6067b36314ab5eb2eb47cecc464545ba58e1ad24/library/std/src/panicking.rs:587:40
[INFO] [stdout]   37:     0x5ec68c07391a - std::panicking::try::hd1660ce9efadef5a
[INFO] [stdout]                                at /rustc/6067b36314ab5eb2eb47cecc464545ba58e1ad24/library/std/src/panicking.rs:550:19
[INFO] [stdout]   38:     0x5ec68c07391a - std::panic::catch_unwind::h5ee8d7823b8ca744
[INFO] [stdout]                                at /rustc/6067b36314ab5eb2eb47cecc464545ba58e1ad24/library/std/src/panic.rs:358:14
[INFO] [stdout]   39:     0x5ec68c07391a - std::thread::Builder::spawn_unchecked_::{{closure}}::h53c3a1894dce8407
[INFO] [stdout]                                at /rustc/6067b36314ab5eb2eb47cecc464545ba58e1ad24/library/std/src/thread/mod.rs:557:30
[INFO] [stdout]   40:     0x5ec68c07391a - core::ops::function::FnOnce::call_once{{vtable.shim}}::h048ce291ad4f62bf
[INFO] [stdout]                                at /rustc/6067b36314ab5eb2eb47cecc464545ba58e1ad24/library/core/src/ops/function.rs:250:5
[INFO] [stdout]   41:     0x5ec68c0f01db - <alloc::boxed::Box<F,A> as core::ops::function::FnOnce<Args>>::call_once::ha52bedf99a3b4981
[INFO] [stdout]                                at /rustc/6067b36314ab5eb2eb47cecc464545ba58e1ad24/library/alloc/src/boxed.rs:2013:9
[INFO] [stdout]   42:     0x5ec68c0f01db - <alloc::boxed::Box<F,A> as core::ops::function::FnOnce<Args>>::call_once::h567748934d80ccf8
[INFO] [stdout]                                at /rustc/6067b36314ab5eb2eb47cecc464545ba58e1ad24/library/alloc/src/boxed.rs:2013:9
[INFO] [stdout]   43:     0x5ec68c0f01db - std::sys::pal::unix::thread::Thread::new::thread_start::h2d970728ae887adc
[INFO] [stdout]                                at /rustc/6067b36314ab5eb2eb47cecc464545ba58e1ad24/library/std/src/sys/pal/unix/thread.rs:106:17
[INFO] [stdout]   44:     0x7c201e3cdac3 - <unknown>
[INFO] [stdout]   45:     0x7c201e45ea04 - clone
[INFO] [stdout]   46:                0x0 - <unknown>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout]     utils::bed::tests::test_bed_reader
[INFO] [stdout] 
[INFO] [stdout] test result: FAILED. 1 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.14s
[INFO] [stdout] 
[INFO] [stderr] error: test failed, to rerun pass `-p gbam_tools --lib`
[INFO] running `Command { std: "docker" "inspect" "c2e92a2223d666db09d093a4f8e7b39e5e664438e749589ff7760486f2bc20b2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c2e92a2223d666db09d093a4f8e7b39e5e664438e749589ff7760486f2bc20b2", kill_on_drop: false }`
[INFO] [stdout] c2e92a2223d666db09d093a4f8e7b39e5e664438e749589ff7760486f2bc20b2
