[INFO] cloning repository https://github.com/ARU-life-sciences/hmm_tblout
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/ARU-life-sciences/hmm_tblout" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FARU-life-sciences%2Fhmm_tblout", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FARU-life-sciences%2Fhmm_tblout'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 85b9ca67067878e63880fdaf94f30c0b0686e88b
[INFO] testing ARU-life-sciences/hmm_tblout against nightly-2025-01-18 for randomize-layout-2
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FARU-life-sciences%2Fhmm_tblout" "/workspace/builds/worker-7-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-7-tc1/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/ARU-life-sciences/hmm_tblout on toolchain nightly-2025-01-18
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+nightly-2025-01-18" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/ARU-life-sciences/hmm_tblout
[INFO] finished tweaking git repo https://github.com/ARU-life-sciences/hmm_tblout
[INFO] tweaked toml for git repo https://github.com/ARU-life-sciences/hmm_tblout written to /workspace/builds/worker-7-tc1/source/Cargo.toml
[INFO] crate git repo https://github.com/ARU-life-sciences/hmm_tblout already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+nightly-2025-01-18" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:819108c5571ea2e421544af4d832f968d213c87fbe3707a016657f43d2f853bc" "/opt/rustwide/cargo-home/bin/cargo" "+nightly-2025-01-18" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 503f2fe48e96a1dedbae055d8955378afd364ead0a72ef4f48fc7b0f271cc44d
[INFO] running `Command { std: "docker" "start" "-a" "503f2fe48e96a1dedbae055d8955378afd364ead0a72ef4f48fc7b0f271cc44d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "503f2fe48e96a1dedbae055d8955378afd364ead0a72ef4f48fc7b0f271cc44d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "503f2fe48e96a1dedbae055d8955378afd364ead0a72ef4f48fc7b0f271cc44d", kill_on_drop: false }`
[INFO] [stdout] 503f2fe48e96a1dedbae055d8955378afd364ead0a72ef4f48fc7b0f271cc44d
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:819108c5571ea2e421544af4d832f968d213c87fbe3707a016657f43d2f853bc" "/opt/rustwide/cargo-home/bin/cargo" "+nightly-2025-01-18" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] f1bfadb98c6b36ddda15dbaf24b71d69f7766c9f284482b28d80981d11f0e932
[INFO] running `Command { std: "docker" "start" "-a" "f1bfadb98c6b36ddda15dbaf24b71d69f7766c9f284482b28d80981d11f0e932", kill_on_drop: false }`
[INFO] [stderr]    Compiling hmm_tblout v0.2.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 0.36s
[INFO] running `Command { std: "docker" "inspect" "f1bfadb98c6b36ddda15dbaf24b71d69f7766c9f284482b28d80981d11f0e932", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f1bfadb98c6b36ddda15dbaf24b71d69f7766c9f284482b28d80981d11f0e932", kill_on_drop: false }`
[INFO] [stdout] f1bfadb98c6b36ddda15dbaf24b71d69f7766c9f284482b28d80981d11f0e932
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:819108c5571ea2e421544af4d832f968d213c87fbe3707a016657f43d2f853bc" "/opt/rustwide/cargo-home/bin/cargo" "+nightly-2025-01-18" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] d4e05ad6f5c3ea303b85de15b63311d1cc69f880143c3d3dd1fdec2964001b79
[INFO] running `Command { std: "docker" "start" "-a" "d4e05ad6f5c3ea303b85de15b63311d1cc69f880143c3d3dd1fdec2964001b79", kill_on_drop: false }`
[INFO] [stderr]    Compiling hmm_tblout v0.2.1 (/opt/rustwide/workdir)
[INFO] [stdout] warning: constant `NHMMSCAN_FILE` is never used
[INFO] [stdout]    --> src/lib.rs:136:11
[INFO] [stdout]     |
[INFO] [stdout] 136 |     const NHMMSCAN_FILE: &str = "# target name        accession  query name           accession  hmmfrom hmm to alifrom  ali to envfrom  ...
[INFO] [stdout]     |           ^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: constant `HMMSCAN_FILE` is never used
[INFO] [stdout]    --> src/lib.rs:157:11
[INFO] [stdout]     |
[INFO] [stdout] 157 |     const HMMSCAN_FILE: &str = "#                                                               --- full sequence ---- --- best 1 domain ...
[INFO] [stdout]     |           ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: constant `HMMSEARCH_FILE` is never used
[INFO] [stdout]    --> src/lib.rs:185:11
[INFO] [stdout]     |
[INFO] [stdout] 185 |     const HMMSEARCH_FILE: &str = "#                                                               --- full sequence ---- --- best 1 domai...
[INFO] [stdout]     |           ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 1.39s
[INFO] running `Command { std: "docker" "inspect" "d4e05ad6f5c3ea303b85de15b63311d1cc69f880143c3d3dd1fdec2964001b79", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "d4e05ad6f5c3ea303b85de15b63311d1cc69f880143c3d3dd1fdec2964001b79", kill_on_drop: false }`
[INFO] [stdout] d4e05ad6f5c3ea303b85de15b63311d1cc69f880143c3d3dd1fdec2964001b79
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:819108c5571ea2e421544af4d832f968d213c87fbe3707a016657f43d2f853bc" "/opt/rustwide/cargo-home/bin/cargo" "+nightly-2025-01-18" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] ef892a01289a175cf3fffb8fc96ba77924da4fe9b9b9d170862ee66b3e4a44c0
[INFO] running `Command { std: "docker" "start" "-a" "ef892a01289a175cf3fffb8fc96ba77924da4fe9b9b9d170862ee66b3e4a44c0", kill_on_drop: false }`
[INFO] [stderr] warning: constant `NHMMSCAN_FILE` is never used
[INFO] [stderr]    --> src/lib.rs:136:11
[INFO] [stderr]     |
[INFO] [stderr] 136 |     const NHMMSCAN_FILE: &str = "# target name        accession  query name           accession  hmmfrom hmm to alifrom  ali to envfrom  ...
[INFO] [stderr]     |           ^^^^^^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(dead_code)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: constant `HMMSCAN_FILE` is never used
[INFO] [stderr]    --> src/lib.rs:157:11
[INFO] [stderr]     |
[INFO] [stderr] 157 |     const HMMSCAN_FILE: &str = "#                                                               --- full sequence ---- --- best 1 domain ...
[INFO] [stderr]     |           ^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: constant `HMMSEARCH_FILE` is never used
[INFO] [stderr]    --> src/lib.rs:185:11
[INFO] [stderr]     |
[INFO] [stderr] 185 |     const HMMSEARCH_FILE: &str = "#                                                               --- full sequence ---- --- best 1 domai...
[INFO] [stderr]     |           ^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: `hmm_tblout` (lib test) generated 3 warnings
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.03s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/hmm_tblout-94deeadb397e7342)
[INFO] [stdout] 
[INFO] [stdout] running 5 tests
[INFO] [stdout] test tests::test_jackhmmer_meta ... ok
[INFO] [stdout] test tests::test_jackhmmer_records ... ok
[INFO] [stdout] test tests::test_whole_file ... ok
[INFO] [stdout] test tests::test_phmmer_records ... ok
[INFO] [stdout] test tests::test_meta ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 5 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests hmm_tblout
[INFO] [stdout] 
[INFO] [stdout] running 1 test
[INFO] [stdout] test src/lib.rs - (line 7) - compile ... FAILED
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout] 
[INFO] [stdout] ---- src/lib.rs - (line 7) stdout ----
[INFO] [stdout] error[E0254]: the name `hmm_tblout` is defined multiple times
[INFO] [stdout]  --> src/lib.rs:9:5
[INFO] [stdout]   |
[INFO] [stdout] 3 | extern crate r#hmm_tblout;
[INFO] [stdout]   | -------------------------- previous import of the extern crate `hmm_tblout` here
[INFO] [stdout] 4 | use hmm_tblout;
[INFO] [stdout]   |     ^^^^^^^^^^ `hmm_tblout` reimported here
[INFO] [stdout]   |
[INFO] [stdout]   = note: `hmm_tblout` must be defined only once in the type namespace of this module
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to 1 previous error
[INFO] [stdout] 
[INFO] [stdout] For more information about this error, try `rustc --explain E0254`.
[INFO] [stdout] Couldn't compile the test.
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout]     src/lib.rs - (line 7)
[INFO] [stdout] 
[INFO] [stdout] test result: FAILED. 0 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.11s
[INFO] [stdout] 
[INFO] [stderr] error: doctest failed, to rerun pass `--doc`
[INFO] running `Command { std: "docker" "inspect" "ef892a01289a175cf3fffb8fc96ba77924da4fe9b9b9d170862ee66b3e4a44c0", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ef892a01289a175cf3fffb8fc96ba77924da4fe9b9b9d170862ee66b3e4a44c0", kill_on_drop: false }`
[INFO] [stdout] ef892a01289a175cf3fffb8fc96ba77924da4fe9b9b9d170862ee66b3e4a44c0
