[INFO] crate flann-sys 0.1.0 is already in cache [INFO] checking flann-sys-0.1.0 against try#ba14a92a10441c4b839ce71e6ef5f7a48bbff18f for prs-64470-and-65389 [INFO] extracting crate flann-sys 0.1.0 into /workspace/builds/worker-9/source [INFO] validating manifest of crates.io crate flann-sys 0.1.0 on toolchain ba14a92a10441c4b839ce71e6ef5f7a48bbff18f [INFO] running `"/workspace/cargo-home/bin/cargo" "+ba14a92a10441c4b839ce71e6ef5f7a48bbff18f" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started tweaking crates.io crate flann-sys 0.1.0 [INFO] finished tweaking crates.io crate flann-sys 0.1.0 [INFO] tweaked toml for crates.io crate flann-sys 0.1.0 written to /workspace/builds/worker-9/source/Cargo.toml [INFO] running `"/workspace/cargo-home/bin/cargo" "+ba14a92a10441c4b839ce71e6ef5f7a48bbff18f" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] running `"/workspace/cargo-home/bin/cargo" "+ba14a92a10441c4b839ce71e6ef5f7a48bbff18f" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+ba14a92a10441c4b839ce71e6ef5f7a48bbff18f" "check" "--frozen" "--all" "--all-targets"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] a474f86d98f85395aeae6c6c720036770ba5a86dbeccb12bbebd1683556e19b1 [INFO] running `"docker" "start" "-a" "a474f86d98f85395aeae6c6c720036770ba5a86dbeccb12bbebd1683556e19b1"` [INFO] [stderr] Compiling bindgen v0.32.3 [INFO] [stderr] Compiling clang-sys v0.21.2 [INFO] [stderr] Compiling flann-sys v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] error: failed to run custom build command for `flann-sys v0.1.0 (/opt/rustwide/workdir)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/flann-sys-ecc1d6467e23125a/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:rustc-link-lib=gomp [INFO] [stderr] cargo:rustc-link-lib=stdc++ [INFO] [stderr] running: "cmake" "/opt/rustwide/workdir/flann" "-DBUILD_EXAMPLES=OFF" "-DBUILD_TESTS=OFF" "-DBUILD_DOC=OFF" "-DBUILD_PYTHON_BINDINGS=OFF" "-DBUILD_MATLAB_BINDINGS=OFF" "-DUSE_OPENMP=ON" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/flann-sys-ba46df1f206c5883/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_BUILD_TYPE=Debug" [INFO] [stderr] -- The C compiler identification is GNU 7.4.0 [INFO] [stderr] -- The CXX compiler identification is GNU 7.4.0 [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc -- works [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ -- works [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Found PythonInterp: /usr/bin/python (found version "2.7.15") [INFO] [stderr] -- Could NOT find HDF5 (missing: HDF5_LIBRARIES HDF5_INCLUDE_DIRS) (found version "") [INFO] [stderr] -- Could NOT find GTest (missing: GTEST_LIBRARY GTEST_INCLUDE_DIR GTEST_MAIN_LIBRARY) [INFO] [stderr] -- Found OpenMP_C: -fopenmp [INFO] [stderr] -- Found OpenMP_CXX: -fopenmp [INFO] [stderr] -- Found OpenMP: TRUE [INFO] [stderr] -- Install prefix: /opt/rustwide/target/debug/build/flann-sys-ba46df1f206c5883/out [INFO] [stderr] -- Build type: Debug [INFO] [stderr] -- Building C bindings: ON [INFO] [stderr] -- Building examples: OFF [INFO] [stderr] -- Building tests: OFF [INFO] [stderr] -- Building documentation: OFF [INFO] [stderr] -- Building python bindings: OFF [INFO] [stderr] -- Building matlab bindings: OFF [INFO] [stderr] -- Building CUDA library: OFF [INFO] [stderr] -- Using OpenMP support: ON [INFO] [stderr] -- Using MPI support: OFF [INFO] [stderr] -- Configuring incomplete, errors occurred! [INFO] [stderr] See also "/opt/rustwide/target/debug/build/flann-sys-ba46df1f206c5883/out/build/CMakeFiles/CMakeOutput.log". [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] CMake Warning at CMakeLists.txt:78 (message): [INFO] [stderr] hdf5 library not found, some tests will not be run [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Warning at CMakeLists.txt:117 (message): [INFO] [stderr] gtest library not found, some tests will not be run [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Warning (dev) at /usr/share/cmake-3.10/Modules/FindOpenMP.cmake:310 (if): [INFO] [stderr] if given arguments: [INFO] [stderr] [INFO] [stderr] "TRUE" [INFO] [stderr] [INFO] [stderr] An argument named "TRUE" appears in a conditional statement. Policy [INFO] [stderr] CMP0012 is not set: if() recognizes numbers and boolean constants. Run [INFO] [stderr] "cmake --help-policy CMP0012" for policy details. Use the cmake_policy [INFO] [stderr] command to set the policy and suppress this warning. [INFO] [stderr] Call Stack (most recent call first): [INFO] [stderr] /usr/share/cmake-3.10/Modules/FindOpenMP.cmake:425 (_OPENMP_GET_SPEC_DATE) [INFO] [stderr] CMakeLists.txt:122 (find_package) [INFO] [stderr] This warning is for project developers. Use -Wno-dev to suppress it. [INFO] [stderr] [INFO] [stderr] CMake Warning (dev) at /usr/share/cmake-3.10/Modules/FindOpenMP.cmake:310 (if): [INFO] [stderr] if given arguments: [INFO] [stderr] [INFO] [stderr] "TRUE" [INFO] [stderr] [INFO] [stderr] An argument named "TRUE" appears in a conditional statement. Policy [INFO] [stderr] CMP0012 is not set: if() recognizes numbers and boolean constants. Run [INFO] [stderr] "cmake --help-policy CMP0012" for policy details. Use the cmake_policy [INFO] [stderr] command to set the policy and suppress this warning. [INFO] [stderr] Call Stack (most recent call first): [INFO] [stderr] /usr/share/cmake-3.10/Modules/FindOpenMP.cmake:425 (_OPENMP_GET_SPEC_DATE) [INFO] [stderr] CMakeLists.txt:122 (find_package) [INFO] [stderr] This warning is for project developers. Use -Wno-dev to suppress it. [INFO] [stderr] [INFO] [stderr] CMake Error: Could not open file for write in copy operation /opt/rustwide/workdir/flann/src/cpp/flann/config.h.tmp [INFO] [stderr] CMake Error: : System Error: Read-only file system [INFO] [stderr] CMake Error at src/cpp/CMakeLists.txt:5 (configure_file): [INFO] [stderr] configure_file Problem configuring file [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] thread 'main' panicked at ' [INFO] [stderr] command did not execute successfully, got: exit code: 1 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.42/src/lib.rs:861:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x562e9ae5daf4 - backtrace::backtrace::libunwind::trace::hed9e2a0309170f7a [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.37/src/backtrace/libunwind.rs:88 [INFO] [stderr] 1: 0x562e9ae5daf4 - backtrace::backtrace::trace_unsynchronized::h9afd3890a045e254 [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.37/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x562e9ae5daf4 - std::sys_common::backtrace::_print_fmt::h0c9217c367fe7d99 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:76 [INFO] [stderr] 3: 0x562e9ae5daf4 - ::fmt::h1e25c3c7d15a8f7a [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:60 [INFO] [stderr] 4: 0x562e9ae83ecc - core::fmt::write::h222d255985e63ab4 [INFO] [stderr] at src/libcore/fmt/mod.rs:1028 [INFO] [stderr] 5: 0x562e9ae59ce7 - std::io::Write::write_fmt::hff0ed662005260ac [INFO] [stderr] at src/libstd/io/mod.rs:1412 [INFO] [stderr] 6: 0x562e9ae607b5 - std::sys_common::backtrace::_print::hc8e1f3adcde2a297 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:64 [INFO] [stderr] 7: 0x562e9ae607b5 - std::sys_common::backtrace::print::h441b47455c622a48 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:49 [INFO] [stderr] 8: 0x562e9ae607b5 - std::panicking::default_hook::{{closure}}::hf4fb5bc24f0ac057 [INFO] [stderr] at src/libstd/panicking.rs:196 [INFO] [stderr] 9: 0x562e9ae604a6 - std::panicking::default_hook::h13a0b47a82531fb5 [INFO] [stderr] at src/libstd/panicking.rs:210 [INFO] [stderr] 10: 0x562e9ae60eb5 - std::panicking::rust_panic_with_hook::h4a8bd1cefdd0c63e [INFO] [stderr] at src/libstd/panicking.rs:473 [INFO] [stderr] 11: 0x562e9ae60a52 - std::panicking::continue_panic_fmt::h208e402b637bb007 [INFO] [stderr] at src/libstd/panicking.rs:380 [INFO] [stderr] 12: 0x562e9ae609ac - std::panicking::begin_panic_fmt::h759c58e152ee310f [INFO] [stderr] at src/libstd/panicking.rs:335 [INFO] [stderr] 13: 0x562e9a7caa06 - cmake::fail::ha94beffebd6c8365 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.42/src/lib.rs:861 [INFO] [stderr] 14: 0x562e9a7ca38a - cmake::run::h8eb28f5dd4be0279 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.42/src/lib.rs:839 [INFO] [stderr] 15: 0x562e9a7c5dd4 - cmake::Config::build::h9002611bbcbb8f68 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.42/src/lib.rs:674 [INFO] [stderr] 16: 0x562e9a7c2ba8 - build_script_build::main::h87ca1be2bdd93414 [INFO] [stderr] at /opt/rustwide/workdir/build.rs:30 [INFO] [stderr] 17: 0x562e9a7c2240 - std::rt::lang_start::{{closure}}::hf226aaf9334fc08e [INFO] [stderr] at /rustc/ba14a92a10441c4b839ce71e6ef5f7a48bbff18f/src/libstd/rt.rs:64 [INFO] [stderr] 18: 0x562e9ae608e3 - std::rt::lang_start_internal::{{closure}}::h79de390c1f22a575 [INFO] [stderr] at src/libstd/rt.rs:49 [INFO] [stderr] 19: 0x562e9ae608e3 - std::panicking::try::do_call::h7ab738dd9e6d8623 [INFO] [stderr] at src/libstd/panicking.rs:292 [INFO] [stderr] 20: 0x562e9ae68a0a - __rust_maybe_catch_panic [INFO] [stderr] at src/libpanic_unwind/lib.rs:80 [INFO] [stderr] 21: 0x562e9ae613ad - std::panicking::try::h02240b4a14001fb3 [INFO] [stderr] at src/libstd/panicking.rs:271 [INFO] [stderr] 22: 0x562e9ae613ad - std::panic::catch_unwind::hf518ccf3f5414b1b [INFO] [stderr] at src/libstd/panic.rs:394 [INFO] [stderr] 23: 0x562e9ae613ad - std::rt::lang_start_internal::hb1418bf06dc13abc [INFO] [stderr] at src/libstd/rt.rs:48 [INFO] [stderr] 24: 0x562e9a7c2219 - std::rt::lang_start::hda38645ba05761ed [INFO] [stderr] at /rustc/ba14a92a10441c4b839ce71e6ef5f7a48bbff18f/src/libstd/rt.rs:64 [INFO] [stderr] 25: 0x562e9a7c2f8a - main [INFO] [stderr] 26: 0x7f5f7b438b97 - __libc_start_main [INFO] [stderr] 27: 0x562e9a7bfa4a - _start [INFO] [stderr] 28: 0x0 - [INFO] [stderr] [INFO] running `"docker" "inspect" "a474f86d98f85395aeae6c6c720036770ba5a86dbeccb12bbebd1683556e19b1"` [INFO] running `"docker" "rm" "-f" "a474f86d98f85395aeae6c6c720036770ba5a86dbeccb12bbebd1683556e19b1"` [INFO] [stdout] a474f86d98f85395aeae6c6c720036770ba5a86dbeccb12bbebd1683556e19b1