[INFO] crate flann 0.1.0 is already in cache [INFO] checking flann-0.1.0 against master#b61e69433951e31f7bd746e22f516a48ad41623b for prs-64470-and-65389 [INFO] extracting crate flann 0.1.0 into /workspace/builds/worker-1/source [INFO] validating manifest of crates.io crate flann 0.1.0 on toolchain b61e69433951e31f7bd746e22f516a48ad41623b [INFO] running `"/workspace/cargo-home/bin/cargo" "+b61e69433951e31f7bd746e22f516a48ad41623b" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started tweaking crates.io crate flann 0.1.0 [INFO] finished tweaking crates.io crate flann 0.1.0 [INFO] tweaked toml for crates.io crate flann 0.1.0 written to /workspace/builds/worker-1/source/Cargo.toml [INFO] running `"/workspace/cargo-home/bin/cargo" "+b61e69433951e31f7bd746e22f516a48ad41623b" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] running `"/workspace/cargo-home/bin/cargo" "+b61e69433951e31f7bd746e22f516a48ad41623b" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+b61e69433951e31f7bd746e22f516a48ad41623b" "check" "--frozen" "--all" "--all-targets"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 444f49a42d3f16ab02780ff2700b2ab288f6fe4bb6fa83822816812e4b6e5933 [INFO] running `"docker" "start" "-a" "444f49a42d3f16ab02780ff2700b2ab288f6fe4bb6fa83822816812e4b6e5933"` [INFO] [stderr] Compiling bindgen v0.32.3 [INFO] [stderr] Checking assert_approx_eq v1.1.0 [INFO] [stderr] Compiling clang-sys v0.21.2 [INFO] [stderr] Compiling proc-macro2 v0.2.3 [INFO] [stderr] Checking failure v0.1.6 [INFO] [stderr] Compiling quote v0.4.2 [INFO] [stderr] Compiling flann-sys v0.1.0 [INFO] [stderr] error: failed to run custom build command for `flann-sys v0.1.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/flann-sys-0728327d2f34ea0b/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:rustc-link-lib=gomp [INFO] [stderr] cargo:rustc-link-lib=stdc++ [INFO] [stderr] running: "cmake" "/opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/flann-sys-0.1.0/flann" "-DBUILD_EXAMPLES=OFF" "-DBUILD_TESTS=OFF" "-DBUILD_DOC=OFF" "-DBUILD_PYTHON_BINDINGS=OFF" "-DBUILD_MATLAB_BINDINGS=OFF" "-DUSE_OPENMP=ON" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/flann-sys-024242ba96ff6001/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_BUILD_TYPE=Debug" [INFO] [stderr] -- The C compiler identification is GNU 7.4.0 [INFO] [stderr] -- The CXX compiler identification is GNU 7.4.0 [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc -- works [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ -- works [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Found PythonInterp: /usr/bin/python (found version "2.7.15") [INFO] [stderr] -- Could NOT find HDF5 (missing: HDF5_LIBRARIES HDF5_INCLUDE_DIRS) (found version "") [INFO] [stderr] -- Could NOT find GTest (missing: GTEST_LIBRARY GTEST_INCLUDE_DIR GTEST_MAIN_LIBRARY) [INFO] [stderr] -- Found OpenMP_C: -fopenmp [INFO] [stderr] -- Found OpenMP_CXX: -fopenmp [INFO] [stderr] -- Found OpenMP: TRUE [INFO] [stderr] -- Install prefix: /opt/rustwide/target/debug/build/flann-sys-024242ba96ff6001/out [INFO] [stderr] -- Build type: Debug [INFO] [stderr] -- Building C bindings: ON [INFO] [stderr] -- Building examples: OFF [INFO] [stderr] -- Building tests: OFF [INFO] [stderr] -- Building documentation: OFF [INFO] [stderr] -- Building python bindings: OFF [INFO] [stderr] -- Building matlab bindings: OFF [INFO] [stderr] -- Building CUDA library: OFF [INFO] [stderr] -- Using OpenMP support: ON [INFO] [stderr] -- Using MPI support: OFF [INFO] [stderr] -- Configuring incomplete, errors occurred! [INFO] [stderr] See also "/opt/rustwide/target/debug/build/flann-sys-024242ba96ff6001/out/build/CMakeFiles/CMakeOutput.log". [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] CMake Warning at CMakeLists.txt:78 (message): [INFO] [stderr] hdf5 library not found, some tests will not be run [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Warning at CMakeLists.txt:117 (message): [INFO] [stderr] gtest library not found, some tests will not be run [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Warning (dev) at /usr/share/cmake-3.10/Modules/FindOpenMP.cmake:310 (if): [INFO] [stderr] if given arguments: [INFO] [stderr] [INFO] [stderr] "TRUE" [INFO] [stderr] [INFO] [stderr] An argument named "TRUE" appears in a conditional statement. Policy [INFO] [stderr] CMP0012 is not set: if() recognizes numbers and boolean constants. Run [INFO] [stderr] "cmake --help-policy CMP0012" for policy details. Use the cmake_policy [INFO] [stderr] command to set the policy and suppress this warning. [INFO] [stderr] Call Stack (most recent call first): [INFO] [stderr] /usr/share/cmake-3.10/Modules/FindOpenMP.cmake:425 (_OPENMP_GET_SPEC_DATE) [INFO] [stderr] CMakeLists.txt:122 (find_package) [INFO] [stderr] This warning is for project developers. Use -Wno-dev to suppress it. [INFO] [stderr] [INFO] [stderr] CMake Warning (dev) at /usr/share/cmake-3.10/Modules/FindOpenMP.cmake:310 (if): [INFO] [stderr] if given arguments: [INFO] [stderr] [INFO] [stderr] "TRUE" [INFO] [stderr] [INFO] [stderr] An argument named "TRUE" appears in a conditional statement. Policy [INFO] [stderr] CMP0012 is not set: if() recognizes numbers and boolean constants. Run [INFO] [stderr] "cmake --help-policy CMP0012" for policy details. Use the cmake_policy [INFO] [stderr] command to set the policy and suppress this warning. [INFO] [stderr] Call Stack (most recent call first): [INFO] [stderr] /usr/share/cmake-3.10/Modules/FindOpenMP.cmake:425 (_OPENMP_GET_SPEC_DATE) [INFO] [stderr] CMakeLists.txt:122 (find_package) [INFO] [stderr] This warning is for project developers. Use -Wno-dev to suppress it. [INFO] [stderr] [INFO] [stderr] CMake Error: Could not open file for write in copy operation /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/flann-sys-0.1.0/flann/src/cpp/flann/config.h.tmp [INFO] [stderr] CMake Error: : System Error: Read-only file system [INFO] [stderr] CMake Error at src/cpp/CMakeLists.txt:5 (configure_file): [INFO] [stderr] configure_file Problem configuring file [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] thread 'main' panicked at ' [INFO] [stderr] command did not execute successfully, got: exit code: 1 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.42/src/lib.rs:861:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x5626b8d45284 - backtrace::backtrace::libunwind::trace::h836120cb2cfba712 [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.37/src/backtrace/libunwind.rs:88 [INFO] [stderr] 1: 0x5626b8d45284 - backtrace::backtrace::trace_unsynchronized::h363db4af51bde585 [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.37/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x5626b8d45284 - std::sys_common::backtrace::_print_fmt::h33a80c84a606d44e [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:76 [INFO] [stderr] 3: 0x5626b8d45284 - ::fmt::hc3acf58b6df6127f [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:60 [INFO] [stderr] 4: 0x5626b8d6b65c - core::fmt::write::hdef7f8cce8f6a662 [INFO] [stderr] at src/libcore/fmt/mod.rs:1028 [INFO] [stderr] 5: 0x5626b8d41477 - std::io::Write::write_fmt::h42f193674aa0004e [INFO] [stderr] at src/libstd/io/mod.rs:1412 [INFO] [stderr] 6: 0x5626b8d47f45 - std::sys_common::backtrace::_print::h5da26908d886b2c7 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:64 [INFO] [stderr] 7: 0x5626b8d47f45 - std::sys_common::backtrace::print::h8a6f66fe88800872 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:49 [INFO] [stderr] 8: 0x5626b8d47f45 - std::panicking::default_hook::{{closure}}::h2eebe3935948e7ad [INFO] [stderr] at src/libstd/panicking.rs:196 [INFO] [stderr] 9: 0x5626b8d47c36 - std::panicking::default_hook::h6b14b1c7e8865653 [INFO] [stderr] at src/libstd/panicking.rs:210 [INFO] [stderr] 10: 0x5626b8d48645 - std::panicking::rust_panic_with_hook::h41b9717c69a7f473 [INFO] [stderr] at src/libstd/panicking.rs:473 [INFO] [stderr] 11: 0x5626b8d481e2 - std::panicking::continue_panic_fmt::ha3ba417ec3a5f012 [INFO] [stderr] at src/libstd/panicking.rs:380 [INFO] [stderr] 12: 0x5626b8d4813c - std::panicking::begin_panic_fmt::h602c5c3dcb40cb68 [INFO] [stderr] at src/libstd/panicking.rs:335 [INFO] [stderr] 13: 0x5626b86b1af6 - cmake::fail::hb7a03a6a0545042b [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.42/src/lib.rs:861 [INFO] [stderr] 14: 0x5626b86b147a - cmake::run::haa2b6bab7fc2bb90 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.42/src/lib.rs:839 [INFO] [stderr] 15: 0x5626b86acec4 - cmake::Config::build::hf3dc5ae60faa0a79 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.42/src/lib.rs:674 [INFO] [stderr] 16: 0x5626b86a6ec8 - build_script_build::main::h203d625aa04146f6 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/flann-sys-0.1.0/build.rs:30 [INFO] [stderr] 17: 0x5626b86a8210 - std::rt::lang_start::{{closure}}::h2f4947de311aba99 [INFO] [stderr] at /rustc/b61e69433951e31f7bd746e22f516a48ad41623b/src/libstd/rt.rs:64 [INFO] [stderr] 18: 0x5626b8d48073 - std::rt::lang_start_internal::{{closure}}::h9d98976b820605e6 [INFO] [stderr] at src/libstd/rt.rs:49 [INFO] [stderr] 19: 0x5626b8d48073 - std::panicking::try::do_call::heb5bc60e15dbcb52 [INFO] [stderr] at src/libstd/panicking.rs:292 [INFO] [stderr] 20: 0x5626b8d5019a - __rust_maybe_catch_panic [INFO] [stderr] at src/libpanic_unwind/lib.rs:80 [INFO] [stderr] 21: 0x5626b8d48b3d - std::panicking::try::hf9b0b6a7905c4995 [INFO] [stderr] at src/libstd/panicking.rs:271 [INFO] [stderr] 22: 0x5626b8d48b3d - std::panic::catch_unwind::h4f7be31483141e83 [INFO] [stderr] at src/libstd/panic.rs:394 [INFO] [stderr] 23: 0x5626b8d48b3d - std::rt::lang_start_internal::h3053de7339f9193e [INFO] [stderr] at src/libstd/rt.rs:48 [INFO] [stderr] 24: 0x5626b86a81e9 - std::rt::lang_start::hae7fc418f419fc00 [INFO] [stderr] at /rustc/b61e69433951e31f7bd746e22f516a48ad41623b/src/libstd/rt.rs:64 [INFO] [stderr] 25: 0x5626b86a72aa - main [INFO] [stderr] 26: 0x7f926f76ab97 - __libc_start_main [INFO] [stderr] 27: 0x5626b86a6b3a - _start [INFO] [stderr] 28: 0x0 - [INFO] [stderr] [INFO] running `"docker" "inspect" "444f49a42d3f16ab02780ff2700b2ab288f6fe4bb6fa83822816812e4b6e5933"` [INFO] running `"docker" "rm" "-f" "444f49a42d3f16ab02780ff2700b2ab288f6fe4bb6fa83822816812e4b6e5933"` [INFO] [stdout] 444f49a42d3f16ab02780ff2700b2ab288f6fe4bb6fa83822816812e4b6e5933