[INFO] updating cached repository https://github.com/esrice/trio_binning [INFO] running `"git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "-c" "remote.origin.fetch=refs/heads/*:refs/heads/*" "fetch" "origin" "--force" "--prune"` [INFO] [stderr] From https://github.com/esrice/trio_binning [INFO] [stderr] dfbf9bf..bae4095 master -> master [INFO] running `"git" "rev-parse" "HEAD"` [INFO] [stdout] bae4095b7071c00dc857de52d6755d07f481ffdf [INFO] checking esrice/trio_binning against master#b61e69433951e31f7bd746e22f516a48ad41623b for prs-64470-and-65389 [INFO] running `"git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fesrice%2Ftrio_binning" "/workspace/builds/worker-6/source"` [INFO] [stderr] Cloning into '/workspace/builds/worker-6/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/esrice/trio_binning on toolchain b61e69433951e31f7bd746e22f516a48ad41623b [INFO] running `"/workspace/cargo-home/bin/cargo" "+b61e69433951e31f7bd746e22f516a48ad41623b" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started tweaking git repo https://github.com/esrice/trio_binning [INFO] finished tweaking git repo https://github.com/esrice/trio_binning [INFO] tweaked toml for git repo https://github.com/esrice/trio_binning written to /workspace/builds/worker-6/source/Cargo.toml [INFO] crate git repo https://github.com/esrice/trio_binning already has a lockfile, it will not be regenerated [INFO] running `"/workspace/cargo-home/bin/cargo" "+b61e69433951e31f7bd746e22f516a48ad41623b" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+b61e69433951e31f7bd746e22f516a48ad41623b" "check" "--frozen" "--all" "--all-targets"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] d5aa18c94156d48aa07aec5788503a3f0b0f8ab5c706a88bab31366ec4dca357 [INFO] running `"docker" "start" "-a" "d5aa18c94156d48aa07aec5788503a3f0b0f8ab5c706a88bab31366ec4dca357"` [INFO] [stderr] Compiling serde v1.0.72 [INFO] [stderr] Compiling termcolor v1.0.1 [INFO] [stderr] Checking ieee754 v0.2.2 [INFO] [stderr] Checking term_size v0.3.1 [INFO] [stderr] Checking slice-deque v0.1.11 [INFO] [stderr] Compiling memchr v2.0.1 [INFO] [stderr] Compiling regex-syntax v0.6.2 [INFO] [stderr] Compiling bzip2-sys v0.1.6 (https://github.com/alexcrichton/bzip2-rs.git#54aef435) [INFO] [stderr] Compiling which v1.0.5 [INFO] [stderr] Compiling humantime v1.1.1 [INFO] [stderr] Compiling libz-sys v1.0.25 [INFO] [stderr] Compiling lzma-sys v0.1.11 [INFO] [stderr] Compiling fs-utils v1.1.0 [INFO] [stderr] Checking itertools v0.6.5 [INFO] [stderr] Checking textwrap v0.10.0 [INFO] [stderr] Compiling aho-corasick v0.6.6 [INFO] [stderr] Compiling miniz-sys v0.1.10 [INFO] [stderr] Checking smallvec v0.6.4 [INFO] [stderr] Checking buf_redux v0.7.1 [INFO] [stderr] Compiling quote v0.6.8 [INFO] [stderr] Compiling libloading v0.5.0 [INFO] [stderr] Checking clap v2.32.0 [INFO] [stderr] Compiling thread_local v0.3.6 [INFO] [stderr] Checking parking_lot_core v0.2.14 [INFO] [stderr] Compiling syn v0.14.9 [INFO] [stderr] Checking flate2 v1.0.2 [INFO] [stderr] Checking crossbeam-deque v0.5.2 [INFO] [stderr] Checking regex v1.0.2 [INFO] [stderr] Compiling clang-sys v0.22.0 [INFO] [stderr] Compiling regex v0.2.11 [INFO] [stderr] Checking parking_lot v0.6.3 [INFO] [stderr] Checking crossbeam-channel v0.2.4 [INFO] [stderr] Checking crossbeam v0.4.1 [INFO] [stderr] Compiling env_logger v0.5.12 [INFO] [stderr] Compiling bindgen v0.36.1 [INFO] [stderr] Compiling serde_derive v1.0.72 [INFO] [stderr] Checking bio-types v0.2.0 [INFO] [stderr] Checking seq_io v0.3.0 [INFO] [stderr] Compiling rust-htslib v0.21.1-alpha.0 (https://github.com/rust-bio/rust-htslib.git?rev=1f9736e#1f9736ef) [INFO] [stderr] Checking trio_binning v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/seq.rs:27:40 [INFO] [stderr] | [INFO] [stderr] 27 | type Result = result::Result>; [INFO] [stderr] | ^^^^^^^^^^^^ help: use `dyn`: `dyn error::Error` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/seq.rs:27:40 [INFO] [stderr] | [INFO] [stderr] 27 | type Result = result::Result>; [INFO] [stderr] | ^^^^^^^^^^^^ help: use `dyn`: `dyn error::Error` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/classify.rs:128:17 [INFO] [stderr] | [INFO] [stderr] 128 | let mut haplotype; [INFO] [stderr] | ----^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_mut)]` on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/threads.rs:86:25 [INFO] [stderr] | [INFO] [stderr] 86 | let mut haplotype; [INFO] [stderr] | ----^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/classify.rs:128:17 [INFO] [stderr] | [INFO] [stderr] 128 | let mut haplotype; [INFO] [stderr] | ----^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_mut)]` on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/threads.rs:86:25 [INFO] [stderr] | [INFO] [stderr] 86 | let mut haplotype; [INFO] [stderr] | ----^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/bin/classify_by_kmers.rs:12:35 [INFO] [stderr] | [INFO] [stderr] 12 | type BoxResult = Result>; [INFO] [stderr] | ^^^^^^^^^^^^ help: use `dyn`: `dyn error::Error` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/bin/classify_by_alignment.rs:13:35 [INFO] [stderr] | [INFO] [stderr] 13 | type BoxResult = Result>; [INFO] [stderr] | ^^^^^^^^^^^^ help: use `dyn`: `dyn error::Error` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/bin/classify_by_alignment.rs:13:35 [INFO] [stderr] | [INFO] [stderr] 13 | type BoxResult = Result>; [INFO] [stderr] | ^^^^^^^^^^^^ help: use `dyn`: `dyn error::Error` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/bin/classify_by_kmers.rs:12:35 [INFO] [stderr] | [INFO] [stderr] 12 | type BoxResult = Result>; [INFO] [stderr] | ^^^^^^^^^^^^ help: use `dyn`: `dyn error::Error` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 3m 05s [INFO] running `"docker" "inspect" "d5aa18c94156d48aa07aec5788503a3f0b0f8ab5c706a88bab31366ec4dca357"` [INFO] running `"docker" "rm" "-f" "d5aa18c94156d48aa07aec5788503a3f0b0f8ab5c706a88bab31366ec4dca357"` [INFO] [stdout] d5aa18c94156d48aa07aec5788503a3f0b0f8ab5c706a88bab31366ec4dca357