[INFO] cloning repository https://github.com/Cardosaum/cdr3-parser [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/Cardosaum/cdr3-parser" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FCardosaum%2Fcdr3-parser", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FCardosaum%2Fcdr3-parser'... [INFO] updating cached repository https://github.com/Cardosaum/cdr3-parser [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "-c" "remote.origin.fetch=refs/heads/*:refs/heads/*" "fetch" "origin" "--force" "--prune", kill_on_drop: false }` [INFO] updating cached repository https://github.com/Cardosaum/cdr3-parser [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "-c" "remote.origin.fetch=refs/heads/*:refs/heads/*" "fetch" "origin" "--force" "--prune", kill_on_drop: false }` [INFO] updating cached repository https://github.com/Cardosaum/cdr3-parser [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "-c" "remote.origin.fetch=refs/heads/*:refs/heads/*" "fetch" "origin" "--force" "--prune", kill_on_drop: false }` [INFO] updating cached repository https://github.com/Cardosaum/cdr3-parser [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "-c" "remote.origin.fetch=refs/heads/*:refs/heads/*" "fetch" "origin" "--force" "--prune", kill_on_drop: false }` [INFO] updating cached repository https://github.com/Cardosaum/cdr3-parser [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "-c" "remote.origin.fetch=refs/heads/*:refs/heads/*" "fetch" "origin" "--force" "--prune", kill_on_drop: false }` [INFO] updating cached repository https://github.com/Cardosaum/cdr3-parser [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "-c" "remote.origin.fetch=refs/heads/*:refs/heads/*" "fetch" "origin" "--force" "--prune", kill_on_drop: false }` [INFO] updating cached repository https://github.com/Cardosaum/cdr3-parser [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "-c" "remote.origin.fetch=refs/heads/*:refs/heads/*" "fetch" "origin" "--force" "--prune", kill_on_drop: false }` [INFO] updating cached repository https://github.com/Cardosaum/cdr3-parser [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "-c" "remote.origin.fetch=refs/heads/*:refs/heads/*" "fetch" "origin" "--force" "--prune", kill_on_drop: false }` [INFO] updating cached repository https://github.com/Cardosaum/cdr3-parser [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "-c" "remote.origin.fetch=refs/heads/*:refs/heads/*" "fetch" "origin" "--force" "--prune", kill_on_drop: false }` [INFO] updating cached repository https://github.com/Cardosaum/cdr3-parser [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "-c" "remote.origin.fetch=refs/heads/*:refs/heads/*" "fetch" "origin" "--force" "--prune", kill_on_drop: false }` [INFO] updating cached repository https://github.com/Cardosaum/cdr3-parser [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "-c" "remote.origin.fetch=refs/heads/*:refs/heads/*" "fetch" "origin" "--force" "--prune", kill_on_drop: false }` [INFO] updating cached repository https://github.com/Cardosaum/cdr3-parser [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "-c" "remote.origin.fetch=refs/heads/*:refs/heads/*" "fetch" "origin" "--force" "--prune", kill_on_drop: false }` [INFO] updating cached repository https://github.com/Cardosaum/cdr3-parser [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "-c" "remote.origin.fetch=refs/heads/*:refs/heads/*" "fetch" "origin" "--force" "--prune", kill_on_drop: false }` [INFO] updating cached repository https://github.com/Cardosaum/cdr3-parser [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "-c" "remote.origin.fetch=refs/heads/*:refs/heads/*" "fetch" "origin" "--force" "--prune", kill_on_drop: false }` [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] c2bf5d1c91df652b60451b8dac65d97f2f74a5d3 [INFO] checking Cardosaum/cdr3-parser against try#7b91cbfbcf4c73b95e666e0f8972d2f7262ce27e for pr-99880 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FCardosaum%2Fcdr3-parser" "/workspace/builds/worker-6/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-6/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/Cardosaum/cdr3-parser on toolchain 7b91cbfbcf4c73b95e666e0f8972d2f7262ce27e [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+7b91cbfbcf4c73b95e666e0f8972d2f7262ce27e" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/Cardosaum/cdr3-parser [INFO] finished tweaking git repo https://github.com/Cardosaum/cdr3-parser [INFO] tweaked toml for git repo https://github.com/Cardosaum/cdr3-parser written to /workspace/builds/worker-6/source/Cargo.toml [INFO] crate git repo https://github.com/Cardosaum/cdr3-parser already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+7b91cbfbcf4c73b95e666e0f8972d2f7262ce27e" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:ecb52c4cf6672b83cc996368a05b4a059042425f2b6ba9cd23a06cdead5d8d70" "/opt/rustwide/cargo-home/bin/cargo" "+7b91cbfbcf4c73b95e666e0f8972d2f7262ce27e" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 304aa6eb18716b9a7c1df44ad3ae1a69f878ed48ab0425deb40b7dd26defff27 [INFO] running `Command { std: "docker" "start" "-a" "304aa6eb18716b9a7c1df44ad3ae1a69f878ed48ab0425deb40b7dd26defff27", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "304aa6eb18716b9a7c1df44ad3ae1a69f878ed48ab0425deb40b7dd26defff27", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "304aa6eb18716b9a7c1df44ad3ae1a69f878ed48ab0425deb40b7dd26defff27", kill_on_drop: false }` [INFO] [stdout] 304aa6eb18716b9a7c1df44ad3ae1a69f878ed48ab0425deb40b7dd26defff27 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:ecb52c4cf6672b83cc996368a05b4a059042425f2b6ba9cd23a06cdead5d8d70" "/opt/rustwide/cargo-home/bin/cargo" "+7b91cbfbcf4c73b95e666e0f8972d2f7262ce27e" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 4e87ef56708b708248fcb52e95e9670f19917231ae9e1b323618592f3ed24c8b [INFO] running `Command { std: "docker" "start" "-a" "4e87ef56708b708248fcb52e95e9670f19917231ae9e1b323618592f3ed24c8b", kill_on_drop: false }` [INFO] [stderr] Compiling autocfg v1.0.1 [INFO] [stderr] Compiling proc-macro2 v1.0.27 [INFO] [stderr] Compiling unicode-xid v0.2.2 [INFO] [stderr] Compiling syn v1.0.73 [INFO] [stderr] Compiling libm v0.2.1 [INFO] [stderr] Compiling libc v0.2.97 [INFO] [stderr] Checking cfg-if v1.0.0 [INFO] [stderr] Compiling serde_derive v1.0.126 [INFO] [stderr] Compiling serde v1.0.126 [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Compiling memchr v2.4.0 [INFO] [stderr] Compiling getrandom v0.1.16 [INFO] [stderr] Compiling crossbeam-utils v0.8.5 [INFO] [stderr] Checking ppv-lite86 v0.2.10 [INFO] [stderr] Compiling typenum v1.13.0 [INFO] [stderr] Compiling crossbeam-epoch v0.9.5 [INFO] [stderr] Compiling strsim v0.10.0 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Compiling fnv v1.0.7 [INFO] [stderr] Compiling ryu v1.0.5 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling ident_case v1.0.1 [INFO] [stderr] Compiling cc v1.0.69 [INFO] [stderr] Compiling unicode-segmentation v1.7.1 [INFO] [stderr] Compiling rayon-core v1.9.1 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Checking scopeguard v1.1.0 [INFO] [stderr] Compiling fs_extra v1.2.0 [INFO] [stderr] Checking itoa v0.4.7 [INFO] [stderr] Compiling anyhow v1.0.41 [INFO] [stderr] Checking regex-automata v0.1.10 [INFO] [stderr] Checking hashbrown v0.9.1 [INFO] [stderr] Compiling rustversion v1.0.5 [INFO] [stderr] Checking either v1.6.1 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling ndarray v0.14.0 [INFO] [stderr] Checking regex-syntax v0.6.25 [INFO] [stderr] Checking fixedbitset v0.2.0 [INFO] [stderr] Compiling bio v0.34.0 [INFO] [stderr] Checking bit-vec v0.6.3 [INFO] [stderr] Compiling serde_json v1.0.64 [INFO] [stderr] Checking byteorder v1.4.3 [INFO] [stderr] Checking array-macro v1.0.5 [INFO] [stderr] Checking unicode-width v0.1.8 [INFO] [stderr] Checking bytecount v0.6.2 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking strsim v0.8.0 [INFO] [stderr] Checking strum v0.20.0 [INFO] [stderr] Checking triple_accel v0.3.4 [INFO] [stderr] Checking ansi_term v0.11.0 [INFO] [stderr] Checking matrixmultiply v0.2.4 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling memoffset v0.6.4 [INFO] [stderr] Compiling num-rational v0.2.4 [INFO] [stderr] Compiling indexmap v1.6.2 [INFO] [stderr] Compiling num-bigint v0.4.0 [INFO] [stderr] Compiling num-rational v0.4.0 [INFO] [stderr] Compiling num-iter v0.1.42 [INFO] [stderr] Compiling rayon v1.5.1 [INFO] [stderr] Compiling heck v0.3.3 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Checking itertools v0.9.0 [INFO] [stderr] Checking bit-set v0.5.2 [INFO] [stderr] Checking fxhash v0.2.1 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling jemalloc-sys v0.3.2 [INFO] [stderr] Checking crossbeam-channel v0.5.1 [INFO] [stderr] Compiling quote v1.0.9 [INFO] [stderr] Checking aho-corasick v0.7.18 [INFO] [stderr] Checking csv-core v0.1.10 [INFO] [stderr] Checking term_size v0.3.2 [INFO] [stderr] Checking num_cpus v1.13.0 [INFO] [stderr] Checking atty v0.2.14 [INFO] [stderr] Checking textwrap v0.11.0 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Checking petgraph v0.5.1 [INFO] [stderr] Checking crossbeam-deque v0.8.0 [INFO] [stderr] Checking regex v1.5.4 [INFO] [stderr] Checking generic-array v0.13.3 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Checking approx v0.3.2 [INFO] [stderr] Checking num-complex v0.3.1 [INFO] [stderr] Checking ordered-float v1.1.1 [INFO] [stderr] Checking num-complex v0.4.0 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking alga v0.9.3 [INFO] [stderr] Checking rand_distr v0.2.2 [INFO] [stderr] Checking nalgebra v0.19.0 [INFO] [stderr] Checking num v0.4.0 [INFO] [stderr] Compiling darling_core v0.13.0 [INFO] [stderr] Compiling velcro_core v0.5.2 [INFO] [stderr] Compiling thiserror-impl v1.0.25 [INFO] [stderr] Compiling darling_macro v0.13.0 [INFO] [stderr] Compiling enum-map-derive v0.4.6 [INFO] [stderr] Compiling strum_macros v0.20.1 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Compiling velcro_macros v0.5.2 [INFO] [stderr] Compiling getset v0.0.9 [INFO] [stderr] Checking enum-map v0.6.4 [INFO] [stderr] Checking statrs v0.13.0 [INFO] [stderr] Compiling darling v0.13.0 [INFO] [stderr] Compiling serde_with_macros v1.4.2 [INFO] [stderr] Checking velcro v0.5.3 [INFO] [stderr] Checking thiserror v1.0.25 [INFO] [stderr] Checking bio-types v0.11.0 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking bstr v0.2.16 [INFO] [stderr] Checking multimap v0.8.3 [INFO] [stderr] Checking serde_with v1.9.3 [INFO] [stderr] Checking clap v2.33.3 [INFO] [stderr] Checking csv v1.1.6 [INFO] [stderr] Checking jemallocator v0.3.2 [INFO] [stderr] Checking cdr3-parser v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused variable: `sequence` [INFO] [stdout] --> src/cdr3/cdr3.rs:121:24 [INFO] [stdout] | [INFO] [stdout] 121 | pub fn aa_groups<'seq>(sequence: String) -> BTreeMap> { [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_sequence` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `v` [INFO] [stdout] --> src/cdr3/protein_analysis.rs:322:22 [INFO] [stdout] | [INFO] [stdout] 322 | for (aa, v) in &self.count_amino_acids() { [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_v` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `v` [INFO] [stdout] --> src/cdr3/protein_analysis.rs:360:30 [INFO] [stdout] | [INFO] [stdout] 360 | .filter(|(k, v)| **k == 'Y' || **k == 'W' || **k == 'F') [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_v` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `k` [INFO] [stdout] --> src/cdr3/protein_analysis.rs:361:24 [INFO] [stdout] | [INFO] [stdout] 361 | .map(|(k, v)| *v) [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_k` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `n` [INFO] [stdout] --> src/cdr3/protein_analysis.rs:520:25 [INFO] [stdout] | [INFO] [stdout] 520 | if let Some(n) = pKnterminal.get_mut(&nterm) {} [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_n` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `sequence` [INFO] [stdout] --> src/cdr3/cdr3.rs:121:24 [INFO] [stdout] | [INFO] [stdout] 121 | pub fn aa_groups<'seq>(sequence: String) -> BTreeMap> { [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_sequence` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `v` [INFO] [stdout] --> src/cdr3/protein_analysis.rs:322:22 [INFO] [stdout] | [INFO] [stdout] 322 | for (aa, v) in &self.count_amino_acids() { [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_v` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `v` [INFO] [stdout] --> src/cdr3/protein_analysis.rs:360:30 [INFO] [stdout] | [INFO] [stdout] 360 | .filter(|(k, v)| **k == 'Y' || **k == 'W' || **k == 'F') [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_v` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `k` [INFO] [stdout] --> src/cdr3/protein_analysis.rs:361:24 [INFO] [stdout] | [INFO] [stdout] 361 | .map(|(k, v)| *v) [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_k` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `n` [INFO] [stdout] --> src/cdr3/protein_analysis.rs:520:25 [INFO] [stdout] | [INFO] [stdout] 520 | if let Some(n) = pKnterminal.get_mut(&nterm) {} [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_n` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/cdr3/protein_analysis.rs:272:49 [INFO] [stdout] | [INFO] [stdout] 272 | pub fn new(sequence: &str, quantity: usize, mut pH: Option) -> Self { [INFO] [stdout] | ----^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/cdr3/protein_analysis.rs:272:49 [INFO] [stdout] | [INFO] [stdout] 272 | pub fn new(sequence: &str, quantity: usize, mut pH: Option) -> Self { [INFO] [stdout] | ----^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/cdr3/protein_analysis.rs:502:17 [INFO] [stdout] | [INFO] [stdout] 502 | let mut pos_pKs: HashMap = POSITIVE_PKS.clone(); [INFO] [stdout] | ----^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/cdr3/protein_analysis.rs:503:17 [INFO] [stdout] | [INFO] [stdout] 503 | let mut neg_pKs: HashMap = NEGATIVE_PKS.clone(); [INFO] [stdout] | ----^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `molecular_weight` is never used [INFO] [stdout] --> src/cdr3/cdr3.rs:61:8 [INFO] [stdout] | [INFO] [stdout] 61 | pub fn molecular_weight(sequence: &str) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `aromaticity` is never used [INFO] [stdout] --> src/cdr3/cdr3.rs:103:8 [INFO] [stdout] | [INFO] [stdout] 103 | pub fn aromaticity(sequence: &str) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `create_cdr3_dict` is never used [INFO] [stdout] --> src/cdr3/cdr3.rs:110:8 [INFO] [stdout] | [INFO] [stdout] 110 | pub fn create_cdr3_dict(cdr3_sequence: Vec) -> BTreeMap { [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `aa_groups` is never used [INFO] [stdout] --> src/cdr3/cdr3.rs:121:8 [INFO] [stdout] | [INFO] [stdout] 121 | pub fn aa_groups<'seq>(sequence: String) -> BTreeMap> { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function `pK_table` is never used [INFO] [stdout] --> src/cdr3/protein_analysis.rs:500:8 [INFO] [stdout] | [INFO] [stdout] 500 | fn pK_table(&mut self) -> (HashMap, HashMap) { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function `select_charged` is never used [INFO] [stdout] --> src/cdr3/protein_analysis.rs:530:8 [INFO] [stdout] | [INFO] [stdout] 530 | fn select_charged(&mut self) -> HashMap { [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/cdr3/protein_analysis.rs:502:17 [INFO] [stdout] | [INFO] [stdout] 502 | let mut pos_pKs: HashMap = POSITIVE_PKS.clone(); [INFO] [stdout] | ----^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/cdr3/protein_analysis.rs:503:17 [INFO] [stdout] | [INFO] [stdout] 503 | let mut neg_pKs: HashMap = NEGATIVE_PKS.clone(); [INFO] [stdout] | ----^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `MW` should have a snake case name [INFO] [stdout] --> src/cdr3/cdr3.rs:24:9 [INFO] [stdout] | [INFO] [stdout] 24 | pub MW: f64, [INFO] [stdout] | ^^ help: convert the identifier to snake case: `mw` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_snake_case)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `AV` should have a snake case name [INFO] [stdout] --> src/cdr3/cdr3.rs:25:9 [INFO] [stdout] | [INFO] [stdout] 25 | pub AV: f64, [INFO] [stdout] | ^^ help: convert the identifier to snake case: `av` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `IP` should have a snake case name [INFO] [stdout] --> src/cdr3/cdr3.rs:26:5 [INFO] [stdout] | [INFO] [stdout] 26 | IP: f64, [INFO] [stdout] | ^^ help: convert the identifier to snake case: `ip` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `P` should have a snake case name [INFO] [stdout] --> src/cdr3/cdr3.rs:282:13 [INFO] [stdout] | [INFO] [stdout] 282 | let mut P = ProteinAnalysis::new(sequence, quantity, None); [INFO] [stdout] | ^ help: convert the identifier to snake case: `p` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `H` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:65:13 [INFO] [stdout] | [INFO] [stdout] 65 | let H: HashMap> = [INFO] [stdout] | ^ help: convert the identifier to snake case: `h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `neg_pKs` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:246:5 [INFO] [stdout] | [INFO] [stdout] 246 | neg_pKs: HashMap, [INFO] [stdout] | ^^^^^^^ help: convert the identifier to snake case: `neg_p_ks` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `pos_pKs` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:248:5 [INFO] [stdout] | [INFO] [stdout] 248 | pos_pKs: HashMap, [INFO] [stdout] | ^^^^^^^ help: convert the identifier to snake case: `pos_p_ks` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `charge_at_pH` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:258:9 [INFO] [stdout] | [INFO] [stdout] 258 | pub charge_at_pH: Option, [INFO] [stdout] | ^^^^^^^^^^^^ help: convert the identifier to snake case: `charge_at_p_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pH` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:272:53 [INFO] [stdout] | [INFO] [stdout] 272 | pub fn new(sequence: &str, quantity: usize, mut pH: Option) -> Self { [INFO] [stdout] | ^^ help: convert the identifier to snake case: `p_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `PA` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:273:17 [INFO] [stdout] | [INFO] [stdout] 273 | let mut PA = ProteinAnalysis { [INFO] [stdout] | ^^ help: convert the identifier to snake case: `pa` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `charge_at_pH` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:435:12 [INFO] [stdout] | [INFO] [stdout] 435 | pub fn charge_at_pH(&mut self, mut pH: Option) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^ help: convert the identifier to snake case: `charge_at_p_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pH` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:435:40 [INFO] [stdout] | [INFO] [stdout] 435 | pub fn charge_at_pH(&mut self, mut pH: Option) -> f64 { [INFO] [stdout] | ^^ help: convert the identifier to snake case: `p_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pK` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:442:22 [INFO] [stdout] | [INFO] [stdout] 442 | for (aa, pK) in &self.pos_pKs { [INFO] [stdout] | ^^ help: convert the identifier to snake case: `p_k` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pK` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:453:22 [INFO] [stdout] | [INFO] [stdout] 453 | for (aa, pK) in &self.neg_pKs { [INFO] [stdout] | ^^ help: convert the identifier to snake case: `p_k` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `pK_table` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:500:8 [INFO] [stdout] | [INFO] [stdout] 500 | fn pK_table(&mut self) -> (HashMap, HashMap) { [INFO] [stdout] | ^^^^^^^^ help: convert the identifier to snake case: `p_k_table` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pos_pKs` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:502:21 [INFO] [stdout] | [INFO] [stdout] 502 | let mut pos_pKs: HashMap = POSITIVE_PKS.clone(); [INFO] [stdout] | ^^^^^^^ help: convert the identifier to snake case: `pos_p_ks` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `neg_pKs` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:503:21 [INFO] [stdout] | [INFO] [stdout] 503 | let mut neg_pKs: HashMap = NEGATIVE_PKS.clone(); [INFO] [stdout] | ^^^^^^^ help: convert the identifier to snake case: `neg_p_ks` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pKnterminal` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:517:21 [INFO] [stdout] | [INFO] [stdout] 517 | let mut pKnterminal = PKNTERMINAL.clone(); [INFO] [stdout] | ^^^^^^^^^^^ help: convert the identifier to snake case: `p_knterminal` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pKcterminal` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:518:21 [INFO] [stdout] | [INFO] [stdout] 518 | let mut pKcterminal = PKCTERMINAL.clone(); [INFO] [stdout] | ^^^^^^^^^^^ help: convert the identifier to snake case: `p_kcterminal` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pH` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:555:13 [INFO] [stdout] | [INFO] [stdout] 555 | mut pH: Option, [INFO] [stdout] | ^^ help: convert the identifier to snake case: `p_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `molecular_weight` is never used [INFO] [stdout] --> src/cdr3/cdr3.rs:61:8 [INFO] [stdout] | [INFO] [stdout] 61 | pub fn molecular_weight(sequence: &str) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `aromaticity` is never used [INFO] [stdout] --> src/cdr3/cdr3.rs:103:8 [INFO] [stdout] | [INFO] [stdout] 103 | pub fn aromaticity(sequence: &str) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `create_cdr3_dict` is never used [INFO] [stdout] --> src/cdr3/cdr3.rs:110:8 [INFO] [stdout] | [INFO] [stdout] 110 | pub fn create_cdr3_dict(cdr3_sequence: Vec) -> BTreeMap { [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `aa_groups` is never used [INFO] [stdout] --> src/cdr3/cdr3.rs:121:8 [INFO] [stdout] | [INFO] [stdout] 121 | pub fn aa_groups<'seq>(sequence: String) -> BTreeMap> { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function `pK_table` is never used [INFO] [stdout] --> src/cdr3/protein_analysis.rs:500:8 [INFO] [stdout] | [INFO] [stdout] 500 | fn pK_table(&mut self) -> (HashMap, HashMap) { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function `select_charged` is never used [INFO] [stdout] --> src/cdr3/protein_analysis.rs:530:8 [INFO] [stdout] | [INFO] [stdout] 530 | fn select_charged(&mut self) -> HashMap { [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `MW` should have a snake case name [INFO] [stdout] --> src/cdr3/cdr3.rs:24:9 [INFO] [stdout] | [INFO] [stdout] 24 | pub MW: f64, [INFO] [stdout] | ^^ help: convert the identifier to snake case: `mw` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_snake_case)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `AV` should have a snake case name [INFO] [stdout] --> src/cdr3/cdr3.rs:25:9 [INFO] [stdout] | [INFO] [stdout] 25 | pub AV: f64, [INFO] [stdout] | ^^ help: convert the identifier to snake case: `av` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `IP` should have a snake case name [INFO] [stdout] --> src/cdr3/cdr3.rs:26:5 [INFO] [stdout] | [INFO] [stdout] 26 | IP: f64, [INFO] [stdout] | ^^ help: convert the identifier to snake case: `ip` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `P` should have a snake case name [INFO] [stdout] --> src/cdr3/cdr3.rs:282:13 [INFO] [stdout] | [INFO] [stdout] 282 | let mut P = ProteinAnalysis::new(sequence, quantity, None); [INFO] [stdout] | ^ help: convert the identifier to snake case: `p` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `H` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:65:13 [INFO] [stdout] | [INFO] [stdout] 65 | let H: HashMap> = [INFO] [stdout] | ^ help: convert the identifier to snake case: `h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `neg_pKs` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:246:5 [INFO] [stdout] | [INFO] [stdout] 246 | neg_pKs: HashMap, [INFO] [stdout] | ^^^^^^^ help: convert the identifier to snake case: `neg_p_ks` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `pos_pKs` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:248:5 [INFO] [stdout] | [INFO] [stdout] 248 | pos_pKs: HashMap, [INFO] [stdout] | ^^^^^^^ help: convert the identifier to snake case: `pos_p_ks` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `charge_at_pH` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:258:9 [INFO] [stdout] | [INFO] [stdout] 258 | pub charge_at_pH: Option, [INFO] [stdout] | ^^^^^^^^^^^^ help: convert the identifier to snake case: `charge_at_p_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pH` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:272:53 [INFO] [stdout] | [INFO] [stdout] 272 | pub fn new(sequence: &str, quantity: usize, mut pH: Option) -> Self { [INFO] [stdout] | ^^ help: convert the identifier to snake case: `p_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `PA` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:273:17 [INFO] [stdout] | [INFO] [stdout] 273 | let mut PA = ProteinAnalysis { [INFO] [stdout] | ^^ help: convert the identifier to snake case: `pa` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `charge_at_pH` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:435:12 [INFO] [stdout] | [INFO] [stdout] 435 | pub fn charge_at_pH(&mut self, mut pH: Option) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^ help: convert the identifier to snake case: `charge_at_p_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pH` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:435:40 [INFO] [stdout] | [INFO] [stdout] 435 | pub fn charge_at_pH(&mut self, mut pH: Option) -> f64 { [INFO] [stdout] | ^^ help: convert the identifier to snake case: `p_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pK` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:442:22 [INFO] [stdout] | [INFO] [stdout] 442 | for (aa, pK) in &self.pos_pKs { [INFO] [stdout] | ^^ help: convert the identifier to snake case: `p_k` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pK` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:453:22 [INFO] [stdout] | [INFO] [stdout] 453 | for (aa, pK) in &self.neg_pKs { [INFO] [stdout] | ^^ help: convert the identifier to snake case: `p_k` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `pK_table` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:500:8 [INFO] [stdout] | [INFO] [stdout] 500 | fn pK_table(&mut self) -> (HashMap, HashMap) { [INFO] [stdout] | ^^^^^^^^ help: convert the identifier to snake case: `p_k_table` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pos_pKs` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:502:21 [INFO] [stdout] | [INFO] [stdout] 502 | let mut pos_pKs: HashMap = POSITIVE_PKS.clone(); [INFO] [stdout] | ^^^^^^^ help: convert the identifier to snake case: `pos_p_ks` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `neg_pKs` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:503:21 [INFO] [stdout] | [INFO] [stdout] 503 | let mut neg_pKs: HashMap = NEGATIVE_PKS.clone(); [INFO] [stdout] | ^^^^^^^ help: convert the identifier to snake case: `neg_p_ks` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pKnterminal` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:517:21 [INFO] [stdout] | [INFO] [stdout] 517 | let mut pKnterminal = PKNTERMINAL.clone(); [INFO] [stdout] | ^^^^^^^^^^^ help: convert the identifier to snake case: `p_knterminal` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pKcterminal` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:518:21 [INFO] [stdout] | [INFO] [stdout] 518 | let mut pKcterminal = PKCTERMINAL.clone(); [INFO] [stdout] | ^^^^^^^^^^^ help: convert the identifier to snake case: `p_kcterminal` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pH` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:555:13 [INFO] [stdout] | [INFO] [stdout] 555 | mut pH: Option, [INFO] [stdout] | ^^ help: convert the identifier to snake case: `p_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 34 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 34 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1m 21s [INFO] running `Command { std: "docker" "inspect" "4e87ef56708b708248fcb52e95e9670f19917231ae9e1b323618592f3ed24c8b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4e87ef56708b708248fcb52e95e9670f19917231ae9e1b323618592f3ed24c8b", kill_on_drop: false }` [INFO] [stdout] 4e87ef56708b708248fcb52e95e9670f19917231ae9e1b323618592f3ed24c8b