[INFO] fetching crate li_stephens_py_hkhan 0.1.1... [INFO] crate li_stephens_py_hkhan 0.1.1 is already in cache [INFO] crate li_stephens_py_hkhan 0.1.1 is already in cache [INFO] crate li_stephens_py_hkhan 0.1.1 is already in cache [INFO] crate li_stephens_py_hkhan 0.1.1 is already in cache [INFO] crate li_stephens_py_hkhan 0.1.1 is already in cache [INFO] crate li_stephens_py_hkhan 0.1.1 is already in cache [INFO] crate li_stephens_py_hkhan 0.1.1 is already in cache [INFO] crate li_stephens_py_hkhan 0.1.1 is already in cache [INFO] crate li_stephens_py_hkhan 0.1.1 is already in cache [INFO] crate li_stephens_py_hkhan 0.1.1 is already in cache [INFO] crate li_stephens_py_hkhan 0.1.1 is already in cache [INFO] crate li_stephens_py_hkhan 0.1.1 is already in cache [INFO] crate li_stephens_py_hkhan 0.1.1 is already in cache [INFO] crate li_stephens_py_hkhan 0.1.1 is already in cache [INFO] checking li_stephens_py_hkhan-0.1.1 against master#7308c22c6a8d77e82187e290e1f7459870e48d12 for pr-99447 [INFO] extracting crate li_stephens_py_hkhan 0.1.1 into /workspace/builds/worker-2/source [INFO] validating manifest of crates.io crate li_stephens_py_hkhan 0.1.1 on toolchain 7308c22c6a8d77e82187e290e1f7459870e48d12 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+7308c22c6a8d77e82187e290e1f7459870e48d12" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate li_stephens_py_hkhan 0.1.1 [INFO] finished tweaking crates.io crate li_stephens_py_hkhan 0.1.1 [INFO] tweaked toml for crates.io crate li_stephens_py_hkhan 0.1.1 written to /workspace/builds/worker-2/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+7308c22c6a8d77e82187e290e1f7459870e48d12" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+7308c22c6a8d77e82187e290e1f7459870e48d12" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded pyo3-macros v0.15.2 [INFO] [stderr] Downloaded indoc v0.3.6 [INFO] [stderr] Downloaded indoc-impl v0.3.6 [INFO] [stderr] Downloaded pyo3-build-config v0.15.2 [INFO] [stderr] Downloaded pyo3-macros-backend v0.15.2 [INFO] [stderr] Downloaded pyo3 v0.15.2 [INFO] [stderr] Downloaded li-stephens v0.1.0 [INFO] [stderr] Downloaded numpy v0.15.1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:824c28ce115f6b999260af6986f3384c158e782489540e41c0b698ca1d9fd927" "/opt/rustwide/cargo-home/bin/cargo" "+7308c22c6a8d77e82187e290e1f7459870e48d12" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 578e6e64efb9f5e13c031c9285f1b7b8fb817423b9061804deb1a5cfd510d3fe [INFO] running `Command { std: "docker" "start" "-a" "578e6e64efb9f5e13c031c9285f1b7b8fb817423b9061804deb1a5cfd510d3fe", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "578e6e64efb9f5e13c031c9285f1b7b8fb817423b9061804deb1a5cfd510d3fe", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "578e6e64efb9f5e13c031c9285f1b7b8fb817423b9061804deb1a5cfd510d3fe", kill_on_drop: false }` [INFO] [stdout] 578e6e64efb9f5e13c031c9285f1b7b8fb817423b9061804deb1a5cfd510d3fe [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:824c28ce115f6b999260af6986f3384c158e782489540e41c0b698ca1d9fd927" "/opt/rustwide/cargo-home/bin/cargo" "+7308c22c6a8d77e82187e290e1f7459870e48d12" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 8e2f92e257a17340677305cd2b532578569eedfdd2c8a6c9beaae424c9a1d0d2 [INFO] running `Command { std: "docker" "start" "-a" "8e2f92e257a17340677305cd2b532578569eedfdd2c8a6c9beaae424c9a1d0d2", kill_on_drop: false }` [INFO] [stderr] Compiling autocfg v1.1.0 [INFO] [stderr] Compiling proc-macro2 v1.0.43 [INFO] [stderr] Compiling unicode-ident v1.0.3 [INFO] [stderr] Compiling quote v1.0.21 [INFO] [stderr] Compiling pyo3-build-config v0.15.2 [INFO] [stderr] Compiling syn v1.0.99 [INFO] [stderr] Compiling proc-macro-hack v0.5.19 [INFO] [stderr] Compiling once_cell v1.13.0 [INFO] [stderr] Compiling libc v0.2.129 [INFO] [stderr] Compiling parking_lot_core v0.8.5 [INFO] [stderr] Checking cfg-if v1.0.0 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Checking smallvec v1.9.0 [INFO] [stderr] Checking scopeguard v1.1.0 [INFO] [stderr] Compiling unindent v0.1.10 [INFO] [stderr] Checking cfg-if v0.1.10 [INFO] [stderr] Checking instant v0.1.12 [INFO] [stderr] Checking matrixmultiply v0.3.2 [INFO] [stderr] Compiling num-traits v0.2.15 [INFO] [stderr] Compiling num-integer v0.1.45 [INFO] [stderr] Compiling lock_api v0.4.7 [INFO] [stderr] Compiling paste-impl v0.1.18 [INFO] [stderr] Compiling pyo3 v0.15.2 [INFO] [stderr] Checking paste v0.1.18 [INFO] [stderr] Checking parking_lot v0.11.2 [INFO] [stderr] Checking num-complex v0.4.2 [INFO] [stderr] Checking ndarray v0.15.6 [INFO] [stderr] Compiling pyo3-macros-backend v0.15.2 [INFO] [stderr] Checking li-stephens v0.1.0 [INFO] [stderr] Compiling indoc-impl v0.3.6 [INFO] [stderr] Compiling pyo3-macros v0.15.2 [INFO] [stderr] Checking indoc v0.3.6 [INFO] [stderr] Checking numpy v0.15.1 [INFO] [stderr] Checking li_stephens_py_hkhan v0.1.1 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `ndarray` [INFO] [stdout] --> src/lib.rs:1:5 [INFO] [stdout] | [INFO] [stdout] 1 | use ndarray; [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `IntoPyArray`, `PyArray1`, `PyArray2`, `PyArrayDyn`, `PyReadonlyArrayDyn` [INFO] [stdout] --> src/lib.rs:2:13 [INFO] [stdout] | [INFO] [stdout] 2 | use numpy::{IntoPyArray, PyArray1, PyArray2, PyArrayDyn, PyReadonlyArrayDyn}; [INFO] [stdout] | ^^^^^^^^^^^ ^^^^^^^^ ^^^^^^^^ ^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::collections::HashMap` [INFO] [stdout] --> src/lib.rs:5:5 [INFO] [stdout] | [INFO] [stdout] 5 | use std::collections::HashMap; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `ndarray` [INFO] [stdout] --> src/lib.rs:1:5 [INFO] [stdout] | [INFO] [stdout] 1 | use ndarray; [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `IntoPyArray`, `PyArray1`, `PyArray2`, `PyArrayDyn`, `PyReadonlyArrayDyn` [INFO] [stdout] --> src/lib.rs:2:13 [INFO] [stdout] | [INFO] [stdout] 2 | use numpy::{IntoPyArray, PyArray1, PyArray2, PyArrayDyn, PyReadonlyArrayDyn}; [INFO] [stdout] | ^^^^^^^^^^^ ^^^^^^^^ ^^^^^^^^ ^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::collections::HashMap` [INFO] [stdout] --> src/lib.rs:5:5 [INFO] [stdout] | [INFO] [stdout] 5 | use std::collections::HashMap; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `py` [INFO] [stdout] --> src/lib.rs:12:31 [INFO] [stdout] | [INFO] [stdout] 12 | fn li_stephens_probs<'py>(py: Python<'py>,haplotypes: Vec, test_haplotype: String, mutation_prob: f64, [INFO] [stdout] | ^^ help: if this is intentional, prefix it with an underscore: `_py` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `py` [INFO] [stdout] --> src/lib.rs:12:31 [INFO] [stdout] | [INFO] [stdout] 12 | fn li_stephens_probs<'py>(py: Python<'py>,haplotypes: Vec, test_haplotype: String, mutation_prob: f64, [INFO] [stdout] | ^^ help: if this is intentional, prefix it with an underscore: `_py` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 4 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 4 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 22.39s [INFO] running `Command { std: "docker" "inspect" "8e2f92e257a17340677305cd2b532578569eedfdd2c8a6c9beaae424c9a1d0d2", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "8e2f92e257a17340677305cd2b532578569eedfdd2c8a6c9beaae424c9a1d0d2", kill_on_drop: false }` [INFO] [stdout] 8e2f92e257a17340677305cd2b532578569eedfdd2c8a6c9beaae424c9a1d0d2