[INFO] fetching crate genomic_interval_pipeline 0.1.3... [INFO] crate genomic_interval_pipeline 0.1.3 is already in cache [INFO] crate genomic_interval_pipeline 0.1.3 is already in cache [INFO] crate genomic_interval_pipeline 0.1.3 is already in cache [INFO] crate genomic_interval_pipeline 0.1.3 is already in cache [INFO] crate genomic_interval_pipeline 0.1.3 is already in cache [INFO] crate genomic_interval_pipeline 0.1.3 is already in cache [INFO] crate genomic_interval_pipeline 0.1.3 is already in cache [INFO] crate genomic_interval_pipeline 0.1.3 is already in cache [INFO] crate genomic_interval_pipeline 0.1.3 is already in cache [INFO] crate genomic_interval_pipeline 0.1.3 is already in cache [INFO] crate genomic_interval_pipeline 0.1.3 is already in cache [INFO] crate genomic_interval_pipeline 0.1.3 is already in cache [INFO] crate genomic_interval_pipeline 0.1.3 is already in cache [INFO] crate genomic_interval_pipeline 0.1.3 is already in cache [INFO] checking genomic_interval_pipeline-0.1.3 against master#7308c22c6a8d77e82187e290e1f7459870e48d12 for pr-99447 [INFO] extracting crate genomic_interval_pipeline 0.1.3 into /workspace/builds/worker-6/source [INFO] validating manifest of crates.io crate genomic_interval_pipeline 0.1.3 on toolchain 7308c22c6a8d77e82187e290e1f7459870e48d12 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+7308c22c6a8d77e82187e290e1f7459870e48d12" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate genomic_interval_pipeline 0.1.3 [INFO] finished tweaking crates.io crate genomic_interval_pipeline 0.1.3 [INFO] tweaked toml for crates.io crate genomic_interval_pipeline 0.1.3 written to /workspace/builds/worker-6/source/Cargo.toml [INFO] crate crates.io crate genomic_interval_pipeline 0.1.3 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+7308c22c6a8d77e82187e290e1f7459870e48d12" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded newtype_derive v0.1.6 [INFO] [stderr] Downloaded rustc_version v0.1.7 [INFO] [stderr] Downloaded semver v0.1.20 [INFO] [stderr] Downloaded structopt v0.3.20 [INFO] [stderr] Downloaded rust-htslib v0.35.2 [INFO] [stderr] Downloaded linear-map v1.2.0 [INFO] [stderr] Downloaded syn v1.0.50 [INFO] [stderr] Downloaded bio-types v0.7.0 [INFO] [stderr] Downloaded derefable v0.1.0 [INFO] [stderr] Downloaded libloading v0.6.5 [INFO] [stderr] Downloaded hdf5-types v0.7.0 [INFO] [stderr] Downloaded hdf5-sys v0.7.0 [INFO] [stderr] Downloaded hdf5-derive v0.7.0 [INFO] [stderr] Downloaded ascii v1.0.0 [INFO] [stderr] Downloaded ndarray v0.13.1 [INFO] [stderr] Downloaded memrange v0.1.3 [INFO] [stderr] Downloaded structopt-derive v0.4.13 [INFO] [stderr] Downloaded smallvec v1.5.0 [INFO] [stderr] Downloaded ieee754 v0.2.6 [INFO] [stderr] Downloaded theban_interval_tree v0.7.1 [INFO] [stderr] Downloaded pbr v1.0.3 [INFO] [stderr] Downloaded fs-utils v1.1.4 [INFO] [stderr] Downloaded hdf5 v0.7.0 [INFO] [stderr] Downloaded hts-sys v1.11.1-fix1 [INFO] [stderr] Downloaded curl-sys v0.4.38+curl-7.73.0 [INFO] [stderr] Downloaded openssl-src v111.12.0+1.1.1h [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:824c28ce115f6b999260af6986f3384c158e782489540e41c0b698ca1d9fd927" "/opt/rustwide/cargo-home/bin/cargo" "+7308c22c6a8d77e82187e290e1f7459870e48d12" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] cc45f6d7892caf0a1c7f43895d3a3079aa52fc33ae6ba562f90e418a3a50d6ea [INFO] running `Command { std: "docker" "start" "-a" "cc45f6d7892caf0a1c7f43895d3a3079aa52fc33ae6ba562f90e418a3a50d6ea", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "cc45f6d7892caf0a1c7f43895d3a3079aa52fc33ae6ba562f90e418a3a50d6ea", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "cc45f6d7892caf0a1c7f43895d3a3079aa52fc33ae6ba562f90e418a3a50d6ea", kill_on_drop: false }` [INFO] [stdout] cc45f6d7892caf0a1c7f43895d3a3079aa52fc33ae6ba562f90e418a3a50d6ea [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:824c28ce115f6b999260af6986f3384c158e782489540e41c0b698ca1d9fd927" "/opt/rustwide/cargo-home/bin/cargo" "+7308c22c6a8d77e82187e290e1f7459870e48d12" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 831b62f0773749d498e0250b59ab9160041d9c6f5f3deda21e4f55f026645773 [INFO] running `Command { std: "docker" "start" "-a" "831b62f0773749d498e0250b59ab9160041d9c6f5f3deda21e4f55f026645773", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.80 [INFO] [stderr] Compiling autocfg v1.0.1 [INFO] [stderr] Compiling pkg-config v0.3.19 [INFO] [stderr] Compiling proc-macro2 v1.0.24 [INFO] [stderr] Compiling memchr v2.3.4 [INFO] [stderr] Compiling unicode-xid v0.2.1 [INFO] [stderr] Compiling syn v1.0.50 [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Compiling version_check v0.9.2 [INFO] [stderr] Checking cfg-if v0.1.10 [INFO] [stderr] Compiling proc-macro2 v0.4.30 [INFO] [stderr] Compiling regex-syntax v0.6.21 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Checking tinyvec_macros v0.1.0 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Checking matches v0.1.8 [INFO] [stderr] Compiling unicode-xid v0.1.0 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Compiling serde_derive v1.0.117 [INFO] [stderr] Compiling maybe-uninit v2.0.0 [INFO] [stderr] Compiling syn v0.15.44 [INFO] [stderr] Compiling serde v1.0.117 [INFO] [stderr] Compiling crc32fast v1.2.1 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Compiling ndarray v0.13.1 [INFO] [stderr] Compiling log v0.4.11 [INFO] [stderr] Checking scopeguard v1.1.0 [INFO] [stderr] Compiling unicode-segmentation v1.7.0 [INFO] [stderr] Checking percent-encoding v2.1.0 [INFO] [stderr] Checking smallvec v1.5.0 [INFO] [stderr] Checking unicode-width v0.1.8 [INFO] [stderr] Checking ascii v1.0.0 [INFO] [stderr] Checking adler v0.2.3 [INFO] [stderr] Compiling hdf5 v0.7.0 [INFO] [stderr] Checking ansi_term v0.11.0 [INFO] [stderr] Checking rustc-serialize v0.3.24 [INFO] [stderr] Checking strsim v0.8.0 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking ieee754 v0.2.6 [INFO] [stderr] Checking termcolor v1.1.2 [INFO] [stderr] Checking linear-map v1.2.0 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking thread_local v1.0.1 [INFO] [stderr] Compiling libloading v0.6.5 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Checking tinyvec v1.1.0 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling crossbeam-utils v0.7.2 [INFO] [stderr] Compiling miniz_oxide v0.4.3 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.4 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Checking unicode-bidi v0.3.4 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Checking humantime v1.3.0 [INFO] [stderr] Checking matrixmultiply v0.2.3 [INFO] [stderr] Checking lock_api v0.3.4 [INFO] [stderr] Checking textwrap v0.11.0 [INFO] [stderr] Checking form_urlencoded v1.0.0 [INFO] [stderr] Compiling heck v0.3.1 [INFO] [stderr] Checking unicode-normalization v0.1.16 [INFO] [stderr] Checking memrange v0.1.3 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Checking aho-corasick v0.7.15 [INFO] [stderr] Compiling jobserver v0.1.21 [INFO] [stderr] Compiling quote v0.6.13 [INFO] [stderr] Compiling quote v1.0.7 [INFO] [stderr] Checking atty v0.2.14 [INFO] [stderr] Checking parking_lot_core v0.7.2 [INFO] [stderr] Checking rand v0.4.6 [INFO] [stderr] Checking time v0.1.44 [INFO] [stderr] Checking hdf5-types v0.7.0 [INFO] [stderr] Checking idna v0.2.0 [INFO] [stderr] Checking flate2 v1.0.19 [INFO] [stderr] Checking regex v1.4.2 [INFO] [stderr] Compiling cc v1.0.65 [INFO] [stderr] Checking clap v2.33.3 [INFO] [stderr] Checking crossbeam-channel v0.4.4 [INFO] [stderr] Checking parking_lot v0.10.2 [INFO] [stderr] Checking rand v0.3.23 [INFO] [stderr] Checking url v2.2.0 [INFO] [stderr] Compiling openssl-src v111.12.0+1.1.1h [INFO] [stderr] Checking pbr v1.0.3 [INFO] [stderr] Checking theban_interval_tree v0.7.1 [INFO] [stderr] Checking env_logger v0.7.1 [INFO] [stderr] Compiling libz-sys v1.1.2 [INFO] [stderr] Compiling bzip2-sys v0.1.9+1.0.8 [INFO] [stderr] Compiling curl-sys v0.4.38+curl-7.73.0 [INFO] [stderr] Compiling lzma-sys v0.1.17 [INFO] [stderr] Compiling hts-sys v1.11.1-fix1 [INFO] [stderr] Compiling openssl-sys v0.9.58 [INFO] [stderr] Compiling derefable v0.1.0 [INFO] [stderr] Compiling hdf5-sys v0.7.0 [INFO] [stderr] Compiling thiserror-impl v1.0.22 [INFO] [stderr] Compiling derive-new v0.5.8 [INFO] [stderr] Compiling structopt-derive v0.4.13 [INFO] [stderr] Compiling hdf5-derive v0.7.0 [INFO] [stderr] Checking thiserror v1.0.22 [INFO] [stderr] Checking structopt v0.3.20 [INFO] [stderr] Checking bio-types v0.7.0 [INFO] [stderr] Checking rust-htslib v0.35.2 [INFO] [stderr] Checking genomic_interval_pipeline v0.1.3 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 2m 27s [INFO] running `Command { std: "docker" "inspect" "831b62f0773749d498e0250b59ab9160041d9c6f5f3deda21e4f55f026645773", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "831b62f0773749d498e0250b59ab9160041d9c6f5f3deda21e4f55f026645773", kill_on_drop: false }` [INFO] [stdout] 831b62f0773749d498e0250b59ab9160041d9c6f5f3deda21e4f55f026645773