[INFO] fetching crate bio 0.41.0...
[INFO] crate bio 0.41.0 is already in cache
[INFO] crate bio 0.41.0 is already in cache
[INFO] crate bio 0.41.0 is already in cache
[INFO] crate bio 0.41.0 is already in cache
[INFO] crate bio 0.41.0 is already in cache
[INFO] crate bio 0.41.0 is already in cache
[INFO] crate bio 0.41.0 is already in cache
[INFO] crate bio 0.41.0 is already in cache
[INFO] crate bio 0.41.0 is already in cache
[INFO] crate bio 0.41.0 is already in cache
[INFO] crate bio 0.41.0 is already in cache
[INFO] crate bio 0.41.0 is already in cache
[INFO] crate bio 0.41.0 is already in cache
[INFO] crate bio 0.41.0 is already in cache
[INFO] checking bio-0.41.0 against master#7308c22c6a8d77e82187e290e1f7459870e48d12 for pr-99447
[INFO] extracting crate bio 0.41.0 into /workspace/builds/worker-2/source
[INFO] validating manifest of crates.io crate bio 0.41.0 on toolchain 7308c22c6a8d77e82187e290e1f7459870e48d12
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+7308c22c6a8d77e82187e290e1f7459870e48d12" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate bio 0.41.0
[INFO] finished tweaking crates.io crate bio 0.41.0
[INFO] tweaked toml for crates.io crate bio 0.41.0 written to /workspace/builds/worker-2/source/Cargo.toml
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+7308c22c6a8d77e82187e290e1f7459870e48d12" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }`
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+7308c22c6a8d77e82187e290e1f7459870e48d12" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded custom_derive v0.1.7
[INFO] [stderr]   Downloaded thiserror-impl v1.0.32
[INFO] [stderr]   Downloaded bytecount v0.6.3
[INFO] [stderr]   Downloaded enum-map-derive v0.6.0
[INFO] [stderr]   Downloaded libm v0.1.4
[INFO] [stderr]   Downloaded bio-types v0.13.0
[INFO] [stderr]   Downloaded pest_derive v2.2.1
[INFO] [stderr]   Downloaded derive-new v0.5.9
[INFO] [stderr]   Downloaded packed_simd_2 v0.3.8
[INFO] [stderr]   Downloaded rawpointer v0.2.1
[INFO] [stderr]   Downloaded strum_macros v0.23.1
[INFO] [stderr]   Downloaded wait-timeout v0.2.0
[INFO] [stderr]   Downloaded quick-error v2.0.1
[INFO] [stderr]   Downloaded rand_xorshift v0.3.0
[INFO] [stderr]   Downloaded sha-1 v0.10.0
[INFO] [stderr]   Downloaded crypto-common v0.1.6
[INFO] [stderr]   Downloaded block-buffer v0.10.2
[INFO] [stderr]   Downloaded ordered-float v1.1.1
[INFO] [stderr]   Downloaded feature-probe v0.1.1
[INFO] [stderr]   Downloaded ucd-trie v0.1.4
[INFO] [stderr]   Downloaded multimap v0.8.3
[INFO] [stderr]   Downloaded rustc_version v0.1.7
[INFO] [stderr]   Downloaded getset v0.1.2
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded bv v0.11.1
[INFO] [stderr]   Downloaded strum_macros v0.24.3
[INFO] [stderr]   Downloaded num-complex v0.4.2
[INFO] [stderr]   Downloaded approx v0.5.1
[INFO] [stderr]   Downloaded matrixmultiply v0.3.2
[INFO] [stderr]   Downloaded num-integer v0.1.45
[INFO] [stderr]   Downloaded rusty-fork v0.3.0
[INFO] [stderr]   Downloaded pest v2.2.1
[INFO] [stderr]   Downloaded semver v0.1.20
[INFO] [stderr]   Downloaded enum-map v1.1.1
[INFO] [stderr]   Downloaded itertools-num v0.1.3
[INFO] [stderr]   Downloaded ndarray v0.15.6
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded digest v0.10.3
[INFO] [stderr]   Downloaded generic-array v0.14.6
[INFO] [stderr]   Downloaded pest_meta v2.2.1
[INFO] [stderr]   Downloaded simba v0.5.1
[INFO] [stderr]   Downloaded nalgebra v0.27.1
[INFO] [stderr]   Downloaded rand_distr v0.4.3
[INFO] [stderr]   Downloaded num-rational v0.4.1
[INFO] [stderr]   Downloaded statrs v0.15.0
[INFO] [stderr]   Downloaded libm v0.2.4
[INFO] [stderr]   Downloaded rustversion v1.0.9
[INFO] [stderr]   Downloaded thiserror v1.0.32
[INFO] [stderr]   Downloaded petgraph v0.6.2
[INFO] [stderr]   Downloaded proptest v1.0.0
[INFO] [stderr]   Downloaded bit-set v0.5.3
[INFO] [stderr]   Downloaded fixedbitset v0.4.2
[INFO] [stderr]   Downloaded bit-vec v0.6.3
[INFO] [stderr]   Downloaded pest_generator v2.2.1
[INFO] [stderr]   Downloaded nalgebra-macros v0.1.0
[INFO] [stderr]   Downloaded strum v0.23.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:824c28ce115f6b999260af6986f3384c158e782489540e41c0b698ca1d9fd927" "/opt/rustwide/cargo-home/bin/cargo" "+7308c22c6a8d77e82187e290e1f7459870e48d12" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 95c3b546b982217c1fd6e2628af0aed2b5957fcc7eaccd884faadf09ef40ae33
[INFO] running `Command { std: "docker" "start" "-a" "95c3b546b982217c1fd6e2628af0aed2b5957fcc7eaccd884faadf09ef40ae33", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "95c3b546b982217c1fd6e2628af0aed2b5957fcc7eaccd884faadf09ef40ae33", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "95c3b546b982217c1fd6e2628af0aed2b5957fcc7eaccd884faadf09ef40ae33", kill_on_drop: false }`
[INFO] [stdout] 95c3b546b982217c1fd6e2628af0aed2b5957fcc7eaccd884faadf09ef40ae33
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:824c28ce115f6b999260af6986f3384c158e782489540e41c0b698ca1d9fd927" "/opt/rustwide/cargo-home/bin/cargo" "+7308c22c6a8d77e82187e290e1f7459870e48d12" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] b9225143da288e2ae175a8a882293ae13ab6a8882f56a632aeca7cffdca6db02
[INFO] running `Command { std: "docker" "start" "-a" "b9225143da288e2ae175a8a882293ae13ab6a8882f56a632aeca7cffdca6db02", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.43
[INFO] [stderr]    Compiling unicode-ident v1.0.3
[INFO] [stderr]    Compiling quote v1.0.21
[INFO] [stderr]    Compiling autocfg v1.1.0
[INFO] [stderr]    Compiling syn v1.0.99
[INFO] [stderr]    Compiling libm v0.2.4
[INFO] [stderr]    Compiling libc v0.2.129
[INFO] [stderr]     Checking cfg-if v1.0.0
[INFO] [stderr]    Compiling serde_derive v1.0.143
[INFO] [stderr]    Compiling memchr v2.5.0
[INFO] [stderr]    Compiling serde v1.0.143
[INFO] [stderr]    Compiling version_check v0.9.4
[INFO] [stderr]     Checking ppv-lite86 v0.2.16
[INFO] [stderr]    Compiling rustversion v1.0.9
[INFO] [stderr]     Checking lazy_static v1.4.0
[INFO] [stderr]    Compiling typenum v1.15.0
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling paste v1.0.8
[INFO] [stderr]     Checking regex-syntax v0.6.27
[INFO] [stderr]    Compiling unicode-segmentation v1.9.0
[INFO] [stderr]    Compiling heck v0.4.0
[INFO] [stderr]     Checking regex-automata v0.1.10
[INFO] [stderr]     Checking byteorder v1.4.3
[INFO] [stderr]     Checking hashbrown v0.12.3
[INFO] [stderr]    Compiling anyhow v1.0.60
[INFO] [stderr]     Checking remove_dir_all v0.5.3
[INFO] [stderr]     Checking bit-vec v0.6.3
[INFO] [stderr]     Checking fastrand v1.8.0
[INFO] [stderr]     Checking fnv v1.0.7
[INFO] [stderr]     Checking fixedbitset v0.4.2
[INFO] [stderr]     Checking ryu v1.0.11
[INFO] [stderr]     Checking itoa v0.4.8
[INFO] [stderr]     Checking either v1.7.0
[INFO] [stderr]     Checking quick-error v1.2.3
[INFO] [stderr]     Checking bytecount v0.6.3
[INFO] [stderr]     Checking quick-error v2.0.1
[INFO] [stderr]     Checking triple_accel v0.4.0
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking strum v0.23.0
[INFO] [stderr]     Checking bitflags v1.3.2
[INFO] [stderr]     Checking matrixmultiply v0.3.2
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling num-traits v0.2.15
[INFO] [stderr]    Compiling num-integer v0.1.45
[INFO] [stderr]    Compiling num-rational v0.4.1
[INFO] [stderr]    Compiling indexmap v1.9.1
[INFO] [stderr]    Compiling heck v0.3.3
[INFO] [stderr]     Checking itertools v0.10.3
[INFO] [stderr]     Checking bit-set v0.5.3
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking aho-corasick v0.7.18
[INFO] [stderr]     Checking csv-core v0.1.10
[INFO] [stderr]     Checking petgraph v0.6.2
[INFO] [stderr]     Checking getrandom v0.2.7
[INFO] [stderr]     Checking wait-timeout v0.2.0
[INFO] [stderr]     Checking tempfile v3.3.0
[INFO] [stderr]     Checking rand_core v0.6.3
[INFO] [stderr]     Checking rusty-fork v0.3.0
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking rand_xorshift v0.3.0
[INFO] [stderr]     Checking regex v1.6.0
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]     Checking num-complex v0.4.2
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]     Checking ordered-float v1.1.1
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]     Checking proptest v1.0.0
[INFO] [stderr]     Checking simba v0.5.1
[INFO] [stderr]     Checking ndarray v0.15.6
[INFO] [stderr]    Compiling thiserror-impl v1.0.32
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]    Compiling strum_macros v0.24.3
[INFO] [stderr]    Compiling enum-map-derive v0.6.0
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling strum_macros v0.23.1
[INFO] [stderr]    Compiling getset v0.1.2
[INFO] [stderr]     Checking enum-map v1.1.1
[INFO] [stderr]     Checking thiserror v1.0.32
[INFO] [stderr]     Checking nalgebra v0.27.1
[INFO] [stderr]     Checking bio-types v0.13.0
[INFO] [stderr]     Checking bstr v0.2.17
[INFO] [stderr]     Checking multimap v0.8.3
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking csv v1.1.6
[INFO] [stderr]     Checking statrs v0.15.0
[INFO] [stderr]     Checking bio v0.41.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: use of deprecated associated function `ndarray::impl_methods::<impl ndarray::ArrayBase<S, D>>::genrows`: Renamed to .rows()
[INFO] [stdout]    --> src/pattern_matching/pssm/mod.rs:299:27
[INFO] [stdout]     |
[INFO] [stdout] 299 |         for row in scores.genrows() {
[INFO] [stdout]     |                           ^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `ndarray::impl_methods::<impl ndarray::ArrayBase<S, D>>::genrows`: Renamed to .rows()
[INFO] [stdout]    --> src/pattern_matching/pssm/mod.rs:299:27
[INFO] [stdout]     |
[INFO] [stdout] 299 |         for row in scores.genrows() {
[INFO] [stdout]     |                           ^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 33.27s
[INFO] running `Command { std: "docker" "inspect" "b9225143da288e2ae175a8a882293ae13ab6a8882f56a632aeca7cffdca6db02", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b9225143da288e2ae175a8a882293ae13ab6a8882f56a632aeca7cffdca6db02", kill_on_drop: false }`
[INFO] [stdout] b9225143da288e2ae175a8a882293ae13ab6a8882f56a632aeca7cffdca6db02