[INFO] fetching crate openbabel 0.3.2...
[INFO] testing openbabel-0.3.2 against try#61cd42370816fd135c0f3b9debf2f5dfcf194594 for pr-98839
[INFO] extracting crate openbabel 0.3.2 into /workspace/builds/worker-3/source
[INFO] validating manifest of crates.io crate openbabel 0.3.2 on toolchain 61cd42370816fd135c0f3b9debf2f5dfcf194594
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+61cd42370816fd135c0f3b9debf2f5dfcf194594" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate openbabel 0.3.2
[INFO] removed 0 missing examples
[INFO] finished tweaking crates.io crate openbabel 0.3.2
[INFO] tweaked toml for crates.io crate openbabel 0.3.2 written to /workspace/builds/worker-3/source/Cargo.toml
[INFO] crate crates.io crate openbabel 0.3.2 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+61cd42370816fd135c0f3b9debf2f5dfcf194594" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5873ed620acfc3295992aedd9294443d62a478a48ba243bc5e6c4f5abaffa05f" "/opt/rustwide/cargo-home/bin/cargo" "+61cd42370816fd135c0f3b9debf2f5dfcf194594" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 5e27604feee60131eb36bd8bea3aad0854f48a0ada1b2ac339beae60fa4cff6d
[INFO] running `Command { std: "docker" "start" "-a" "5e27604feee60131eb36bd8bea3aad0854f48a0ada1b2ac339beae60fa4cff6d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "5e27604feee60131eb36bd8bea3aad0854f48a0ada1b2ac339beae60fa4cff6d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "5e27604feee60131eb36bd8bea3aad0854f48a0ada1b2ac339beae60fa4cff6d", kill_on_drop: false }`
[INFO] [stdout] 5e27604feee60131eb36bd8bea3aad0854f48a0ada1b2ac339beae60fa4cff6d
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5873ed620acfc3295992aedd9294443d62a478a48ba243bc5e6c4f5abaffa05f" "/opt/rustwide/cargo-home/bin/cargo" "+61cd42370816fd135c0f3b9debf2f5dfcf194594" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 81e770d28ba15e423e980ab92977423a1b5fa99396ff947e12b49da6785f9dfc
[INFO] running `Command { std: "docker" "start" "-a" "81e770d28ba15e423e980ab92977423a1b5fa99396ff947e12b49da6785f9dfc", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.37
[INFO] [stderr]    Compiling cc v1.0.73
[INFO] [stderr]    Compiling unicode-xid v0.2.2
[INFO] [stderr]    Compiling syn v1.0.91
[INFO] [stderr]    Compiling scratch v1.0.1
[INFO] [stderr]    Compiling termcolor v1.1.3
[INFO] [stderr]    Compiling cxxbridge-flags v1.0.67
[INFO] [stderr]    Compiling unicode-width v0.1.9
[INFO] [stderr]    Compiling once_cell v1.12.0
[INFO] [stderr]    Compiling fs_extra v1.2.0
[INFO] [stderr]    Compiling codespan-reporting v0.11.1
[INFO] [stderr]    Compiling quote v1.0.18
[INFO] [stderr]    Compiling link-cplusplus v1.0.6
[INFO] [stderr]    Compiling cxx v1.0.67
[INFO] [stderr]    Compiling cxx-build v1.0.68
[INFO] [stderr]    Compiling cxxbridge-macro v1.0.67
[INFO] [stderr]    Compiling openbabel-sys v0.1.7+openbabel-3.1.1
[INFO] [stderr]    Compiling openbabel v0.3.2 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 1m 44s
[INFO] running `Command { std: "docker" "inspect" "81e770d28ba15e423e980ab92977423a1b5fa99396ff947e12b49da6785f9dfc", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "81e770d28ba15e423e980ab92977423a1b5fa99396ff947e12b49da6785f9dfc", kill_on_drop: false }`
[INFO] [stdout] 81e770d28ba15e423e980ab92977423a1b5fa99396ff947e12b49da6785f9dfc
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5873ed620acfc3295992aedd9294443d62a478a48ba243bc5e6c4f5abaffa05f" "/opt/rustwide/cargo-home/bin/cargo" "+61cd42370816fd135c0f3b9debf2f5dfcf194594" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] af0a744e3ab4255ede4c9e965845e6b98b67a5470dfd22d970f17078e8c96019
[INFO] running `Command { std: "docker" "start" "-a" "af0a744e3ab4255ede4c9e965845e6b98b67a5470dfd22d970f17078e8c96019", kill_on_drop: false }`
[INFO] [stderr]    Compiling autocfg v1.1.0
[INFO] [stderr]    Compiling lazy_static v1.4.0
[INFO] [stderr]    Compiling crossbeam-utils v0.8.8
[INFO] [stderr]    Compiling semver v1.0.9
[INFO] [stderr]    Compiling serde v1.0.137
[INFO] [stderr]    Compiling libc v0.2.126
[INFO] [stderr]    Compiling cfg-if v1.0.0
[INFO] [stderr]    Compiling memchr v2.5.0
[INFO] [stderr]    Compiling rayon-core v1.9.3
[INFO] [stderr]    Compiling scopeguard v1.1.0
[INFO] [stderr]    Compiling either v1.6.1
[INFO] [stderr]    Compiling serde_json v1.0.81
[INFO] [stderr]    Compiling ryu v1.0.10
[INFO] [stderr]    Compiling plotters-backend v0.3.2
[INFO] [stderr]    Compiling itoa v1.0.2
[INFO] [stderr]    Compiling regex-automata v0.1.10
[INFO] [stderr]    Compiling serde_derive v1.0.137
[INFO] [stderr]    Compiling half v1.8.2
[INFO] [stderr]    Compiling same-file v1.0.6
[INFO] [stderr]    Compiling itoa v0.4.8
[INFO] [stderr]    Compiling bitflags v1.3.2
[INFO] [stderr]    Compiling regex-syntax v0.6.26
[INFO] [stderr]    Compiling oorandom v11.1.3
[INFO] [stderr]    Compiling textwrap v0.11.0
[INFO] [stderr]    Compiling itertools v0.10.3
[INFO] [stderr]    Compiling walkdir v2.3.2
[INFO] [stderr]    Compiling plotters-svg v0.3.1
[INFO] [stderr]    Compiling clap v2.34.0
[INFO] [stderr]    Compiling memoffset v0.6.5
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.8
[INFO] [stderr]    Compiling num-traits v0.2.15
[INFO] [stderr]    Compiling rayon v1.5.3
[INFO] [stderr]    Compiling rustc_version v0.4.0
[INFO] [stderr]    Compiling crossbeam-channel v0.5.4
[INFO] [stderr]    Compiling csv-core v0.1.10
[INFO] [stderr]    Compiling regex v1.5.6
[INFO] [stderr]    Compiling num_cpus v1.13.1
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling cast v0.2.7
[INFO] [stderr]    Compiling crossbeam-deque v0.8.1
[INFO] [stderr]    Compiling criterion-plot v0.4.4
[INFO] [stderr]    Compiling plotters v0.3.1
[INFO] [stderr]    Compiling bstr v0.2.17
[INFO] [stderr]    Compiling serde_cbor v0.11.2
[INFO] [stderr]    Compiling tinytemplate v1.2.1
[INFO] [stderr]    Compiling csv v1.1.6
[INFO] [stderr]    Compiling criterion v0.3.5
[INFO] [stderr]    Compiling openbabel v0.3.2 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 17.06s
[INFO] running `Command { std: "docker" "inspect" "af0a744e3ab4255ede4c9e965845e6b98b67a5470dfd22d970f17078e8c96019", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "af0a744e3ab4255ede4c9e965845e6b98b67a5470dfd22d970f17078e8c96019", kill_on_drop: false }`
[INFO] [stdout] af0a744e3ab4255ede4c9e965845e6b98b67a5470dfd22d970f17078e8c96019
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5873ed620acfc3295992aedd9294443d62a478a48ba243bc5e6c4f5abaffa05f" "/opt/rustwide/cargo-home/bin/cargo" "+61cd42370816fd135c0f3b9debf2f5dfcf194594" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] df69cc3fc9304cb4a102c12433cf1b436503ef9077b5fd7e0a5581edd73263eb
[INFO] running `Command { std: "docker" "start" "-a" "df69cc3fc9304cb4a102c12433cf1b436503ef9077b5fd7e0a5581edd73263eb", kill_on_drop: false }`
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.60s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/openbabel-78f979c53800257b)
[INFO] [stdout] 
[INFO] [stdout] running 4 tests
[INFO] [stdout] test smartspattern::test_mod_smartspattern::test_match ... ok
[INFO] [stdout] test molecule::test_mod_molecule::test_molecule ... ok
[INFO] [stderr] ==============================
[INFO] [stderr] *** Open Babel Error  in ReadPatternFile
[INFO] [stderr]   Cannot open patterns.txt
[INFO] [stderr] 
[INFO] [stderr] ==============================
[INFO] [stderr] *** Open Babel Error  in ReadPatternFile
[INFO] [stderr]   Cannot open patterns.txt
[INFO] [stderr] 
[INFO] [stderr] ==============================
[INFO] [stderr] *** Open Babel Error  in ReadPatternFile
[INFO] [stderr]   Cannot open SMARTS_InteLigand.txt
[INFO] [stderr] 
[INFO] [stderr] ==============================
[INFO] [stderr] *** Open Babel Error  in ReadPatternFile
[INFO] [stderr]   Cannot open patterns.txt
[INFO] [stderr] 
[INFO] [stderr] ==============================
[INFO] [stderr] *** Open Babel Error  in ReadPatternFile
[INFO] [stderr]   Cannot open SMARTS_InteLigand.txt
[INFO] [stderr] 
[INFO] [stderr] ==============================
[INFO] [stderr] *** Open Babel Error  in ReadPatternFile
[INFO] [stderr]   Cannot open SMARTS_InteLigand.txt
[INFO] [stderr] 
[INFO] [stdout] test fingerprint::test_mod_fingerprint::test_get_fp ... ok
[INFO] [stdout] test fingerprint::test_mod_fingerprint::test_get_fp_for_smiles_vec ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests openbabel
[INFO] [stdout] 
[INFO] [stdout] running 3 tests
[INFO] [stdout] test src/smartspattern.rs - smartspattern (line 5) ... ok
[INFO] [stdout] test src/fingerprint.rs - fingerprint (line 12) ... ok
[INFO] [stdout] test src/molecule.rs - molecule (line 5) ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 3 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 3.79s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "df69cc3fc9304cb4a102c12433cf1b436503ef9077b5fd7e0a5581edd73263eb", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "df69cc3fc9304cb4a102c12433cf1b436503ef9077b5fd7e0a5581edd73263eb", kill_on_drop: false }`
[INFO] [stdout] df69cc3fc9304cb4a102c12433cf1b436503ef9077b5fd7e0a5581edd73263eb