[INFO] fetching crate sigalign 0.1.0... [INFO] checking sigalign-0.1.0 against master#e652caa679a304af11fc04f1f12452f255a82593 for pr-98000 [INFO] extracting crate sigalign 0.1.0 into /workspace/builds/worker-4/source [INFO] validating manifest of crates.io crate sigalign 0.1.0 on toolchain e652caa679a304af11fc04f1f12452f255a82593 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+e652caa679a304af11fc04f1f12452f255a82593" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate sigalign 0.1.0 [INFO] finished tweaking crates.io crate sigalign 0.1.0 [INFO] tweaked toml for crates.io crate sigalign 0.1.0 written to /workspace/builds/worker-4/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+e652caa679a304af11fc04f1f12452f255a82593" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+e652caa679a304af11fc04f1f12452f255a82593" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded rusqlite v0.26.3 [INFO] [stderr] Downloaded fm-index v0.1.2 [INFO] [stderr] Downloaded libdivsufsort-rs v0.1.1 [INFO] [stderr] Downloaded fid v0.1.7 [INFO] [stderr] Downloaded lt-fm-index v0.4.2 [INFO] [stderr] Downloaded bio v0.39.2 [INFO] [stderr] Downloaded bio v0.37.1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:ac0d0aa6ec8ed129e241004a6179c99fa0d2616f50ba759c5b60bd26d0fafa02" "/opt/rustwide/cargo-home/bin/cargo" "+e652caa679a304af11fc04f1f12452f255a82593" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 46dbab5e89c0ffaa1bdcf6fdd35e9378074df17c2550277e985e2199863af7b9 [INFO] running `Command { std: "docker" "start" "-a" "46dbab5e89c0ffaa1bdcf6fdd35e9378074df17c2550277e985e2199863af7b9", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "46dbab5e89c0ffaa1bdcf6fdd35e9378074df17c2550277e985e2199863af7b9", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "46dbab5e89c0ffaa1bdcf6fdd35e9378074df17c2550277e985e2199863af7b9", kill_on_drop: false }` [INFO] [stdout] 46dbab5e89c0ffaa1bdcf6fdd35e9378074df17c2550277e985e2199863af7b9 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:ac0d0aa6ec8ed129e241004a6179c99fa0d2616f50ba759c5b60bd26d0fafa02" "/opt/rustwide/cargo-home/bin/cargo" "+e652caa679a304af11fc04f1f12452f255a82593" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 2b2ddfc3f9b268985e9c61f50a1d207e3a211be42e24919e449264734076cfab [INFO] running `Command { std: "docker" "start" "-a" "2b2ddfc3f9b268985e9c61f50a1d207e3a211be42e24919e449264734076cfab", kill_on_drop: false }` [INFO] [stderr] Compiling autocfg v1.1.0 [INFO] [stderr] Compiling proc-macro2 v1.0.40 [INFO] [stderr] Compiling unicode-ident v1.0.1 [INFO] [stderr] Compiling quote v1.0.20 [INFO] [stderr] Compiling syn v1.0.98 [INFO] [stderr] Compiling libm v0.2.2 [INFO] [stderr] Compiling libc v0.2.126 [INFO] [stderr] Checking cfg-if v1.0.0 [INFO] [stderr] Compiling serde_derive v1.0.137 [INFO] [stderr] Compiling serde v1.0.137 [INFO] [stderr] Compiling version_check v0.9.4 [INFO] [stderr] Compiling memchr v2.5.0 [INFO] [stderr] Checking once_cell v1.12.0 [INFO] [stderr] Compiling cc v1.0.73 [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Checking ppv-lite86 v0.2.16 [INFO] [stderr] Compiling crossbeam-utils v0.8.9 [INFO] [stderr] Checking either v1.6.1 [INFO] [stderr] Compiling typenum v1.15.0 [INFO] [stderr] Compiling unicode-segmentation v1.9.0 [INFO] [stderr] Checking ryu v1.0.10 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[INFO] [stderr] Checking sigalign v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `Deserialize` [INFO] [stdout] --> src/lib.rs:63:24 [INFO] [stdout] | [INFO] [stdout] 63 | use serde::{Serialize, Deserialize, de::DeserializeOwned}; [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `AlignmentResult` [INFO] [stdout] --> src/core/evaluating.rs:3:13 [INFO] [stdout] | [INFO] [stdout] 3 | use super::{AlignmentResult, AlignmentPosition, AlignmentOperation, AlignmentType}; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `PatternLocation` [INFO] [stdout] --> src/algorithm/semi_global.rs:2:43 [INFO] [stdout] | [INFO] [stdout] 2 | use super::{Sequence, ReferenceInterface, PatternLocation}; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `AlignmentType` [INFO] [stdout] --> src/algorithm/semi_global/evaluating.rs:2:69 [INFO] [stdout] | [INFO] [stdout] 2 | use super::{AlignmentResult, AlignmentPosition, AlignmentOperation, AlignmentType, AlignmentHashSet}; [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Deserialize` [INFO] [stdout] --> src/lib.rs:63:24 [INFO] [stdout] | [INFO] [stdout] 63 | use serde::{Serialize, Deserialize, de::DeserializeOwned}; [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `AlignmentResult` [INFO] [stdout] --> src/core/evaluating.rs:3:13 [INFO] [stdout] | [INFO] [stdout] 3 | use super::{AlignmentResult, AlignmentPosition, AlignmentOperation, AlignmentType}; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `PatternLocation` [INFO] [stdout] --> src/algorithm/semi_global.rs:2:43 [INFO] [stdout] | [INFO] [stdout] 2 | use super::{Sequence, ReferenceInterface, PatternLocation}; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `PatternLocation` [INFO] [stdout] --> src/algorithm/local.rs:2:43 [INFO] [stdout] | [INFO] [stdout] 2 | use super::{Sequence, ReferenceInterface, PatternLocation}; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `AlignmentType` [INFO] [stdout] --> src/algorithm/semi_global/evaluating.rs:2:69 [INFO] [stdout] | [INFO] [stdout] 2 | use super::{AlignmentResult, AlignmentPosition, AlignmentOperation, AlignmentType, AlignmentHashSet}; [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Penalties` [INFO] [stdout] --> src/algorithm/local/anchoring.rs:1:38 [INFO] [stdout] | [INFO] [stdout] 1 | use super::{PRECISION_SCALE, Cutoff, Penalties, MinPenaltyForPattern}; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `PatternLocation` [INFO] [stdout] --> src/algorithm/local.rs:2:43 [INFO] [stdout] | [INFO] [stdout] 2 | use super::{Sequence, ReferenceInterface, PatternLocation}; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `Anchor`, `Anchors` [INFO] [stdout] --> src/algorithm/local/extending/dwfa.rs:4:13 [INFO] [stdout] | [INFO] [stdout] 4 | use super::{Anchors, Anchor, Extension}; [INFO] [stdout] | ^^^^^^^ ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Penalties` [INFO] [stdout] --> src/algorithm/local/anchoring.rs:1:38 [INFO] [stdout] | [INFO] [stdout] 1 | use super::{PRECISION_SCALE, Cutoff, Penalties, MinPenaltyForPattern}; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `Cutoff`, `Penalties` [INFO] [stdout] --> src/algorithm/local/evaluating.rs:1:13 [INFO] [stdout] | [INFO] [stdout] 1 | use super::{Cutoff, Penalties}; [INFO] [stdout] | ^^^^^^ ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `Anchor`, `Anchors` [INFO] [stdout] --> src/algorithm/local/extending/dwfa.rs:4:13 [INFO] [stdout] | [INFO] [stdout] 4 | use super::{Anchors, Anchor, Extension}; [INFO] [stdout] | ^^^^^^^ ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Sequence` [INFO] [stdout] --> src/algorithm/local/evaluating.rs:2:13 [INFO] [stdout] | [INFO] [stdout] 2 | use super::{Sequence}; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `Cutoff`, `Penalties` [INFO] [stdout] --> src/algorithm/local/evaluating.rs:1:13 [INFO] [stdout] | [INFO] [stdout] 1 | use super::{Cutoff, Penalties}; [INFO] [stdout] | ^^^^^^ ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `AlignmentType` [INFO] [stdout] --> src/algorithm/local/evaluating.rs:3:69 [INFO] [stdout] | [INFO] [stdout] 3 | use super::{AlignmentResult, AlignmentPosition, AlignmentOperation, AlignmentType, AlignmentHashSet}; [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Sequence` [INFO] [stdout] --> src/algorithm/local/evaluating.rs:2:13 [INFO] [stdout] | [INFO] [stdout] 2 | use super::{Sequence}; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `AlignmentType` [INFO] [stdout] --> src/algorithm/local/evaluating.rs:3:69 [INFO] [stdout] | [INFO] [stdout] 3 | use super::{AlignmentResult, AlignmentPosition, AlignmentOperation, AlignmentType, AlignmentHashSet}; [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Extension` [INFO] [stdout] --> src/algorithm/local/evaluating.rs:4:30 [INFO] [stdout] | [INFO] [stdout] 4 | use super::{Anchors, Anchor, Extension}; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Extension` [INFO] [stdout] --> src/algorithm/local/evaluating.rs:4:30 [INFO] [stdout] | [INFO] [stdout] 4 | use super::{Anchors, Anchor, Extension}; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `Component`, `Components`, `DropoffWaveFront`, `WaveFrontScore` [INFO] [stdout] --> src/algorithm/local/evaluating.rs:5:13 [INFO] [stdout] | [INFO] [stdout] 5 | use super::{DropoffWaveFront, WaveFrontScore, Components, Component}; [INFO] [stdout] | ^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^ ^^^^^^^^^^ ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `error_msg` [INFO] [stdout] --> src/reference/basic_sequence_provider/file_reader.rs:1:21 [INFO] [stdout] | [INFO] [stdout] 1 | use crate::{Result, error_msg}; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `Component`, `Components`, `DropoffWaveFront`, `WaveFrontScore` [INFO] [stdout] --> src/algorithm/local/evaluating.rs:5:13 [INFO] [stdout] | [INFO] [stdout] 5 | use super::{DropoffWaveFront, WaveFrontScore, Components, Component}; [INFO] [stdout] | ^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^ ^^^^^^^^^^ ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `error_msg` [INFO] [stdout] --> src/reference/basic_sequence_provider/file_reader.rs:1:21 [INFO] [stdout] | [INFO] [stdout] 1 | use crate::{Result, error_msg}; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `Read`, `Write`, `fs::read` [INFO] [stdout] --> src/reference/basic_sequence_provider/file_reader.rs:4:11 [INFO] [stdout] | [INFO] [stdout] 4 | use std::{fs::read, io::{Read, Write, BufReader}}; [INFO] [stdout] | ^^^^^^^^ ^^^^ ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `fastq` [INFO] [stdout] --> src/reference/basic_sequence_provider/file_reader.rs:7:22 [INFO] [stdout] | [INFO] [stdout] 7 | use bio::io::{fasta, fastq}; [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `Read`, `Write`, `fs::read` [INFO] [stdout] --> src/reference/basic_sequence_provider/file_reader.rs:4:11 [INFO] [stdout] | [INFO] [stdout] 4 | use std::{fs::read, io::{Read, Write, BufReader}}; [INFO] [stdout] | ^^^^^^^^ ^^^^ ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `bio::io::fasta::IndexedReader` [INFO] [stdout] --> src/reference/basic_sequence_provider/file_reader.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use bio::io::fasta::IndexedReader; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `fastq` [INFO] [stdout] --> src/reference/basic_sequence_provider/file_reader.rs:7:22 [INFO] [stdout] | [INFO] [stdout] 7 | use bio::io::{fasta, fastq}; [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `error_msg` [INFO] [stdout] --> src/reference/basic_sequence_provider/in_memory.rs:1:21 [INFO] [stdout] | [INFO] [stdout] 1 | use crate::{Result, error_msg}; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `bio::io::fasta::IndexedReader` [INFO] [stdout] --> src/reference/basic_sequence_provider/file_reader.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use bio::io::fasta::IndexedReader; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `error_msg` [INFO] [stdout] --> src/reference/basic_sequence_provider/in_memory.rs:1:21 [INFO] [stdout] | [INFO] [stdout] 1 | use crate::{Result, error_msg}; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `error_msg` [INFO] [stdout] --> src/reference/basic_sequence_provider/indexed_fasta.rs:1:21 [INFO] [stdout] | [INFO] [stdout] 1 | use crate::{Result, error_msg}; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `error_msg` [INFO] [stdout] --> src/reference/basic_sequence_provider/indexed_fasta.rs:1:21 [INFO] [stdout] | [INFO] [stdout] 1 | use crate::{Result, error_msg}; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `FastaReader`, `Labeling`, `reverse_complement_of_nucleotide_sequence` [INFO] [stdout] --> src/reference/basic_sequence_provider/indexed_fasta.rs:2:31 [INFO] [stdout] | [INFO] [stdout] 2 | use super::{SequenceProvider, Labeling, FastaReader, reverse_complement_of_nucleotide_sequence}; [INFO] [stdout] | ^^^^^^^^ ^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `FastaReader`, `Labeling`, `reverse_complement_of_nucleotide_sequence` [INFO] [stdout] --> src/reference/basic_sequence_provider/indexed_fasta.rs:2:31 [INFO] [stdout] | [INFO] [stdout] 2 | use super::{SequenceProvider, Labeling, FastaReader, reverse_complement_of_nucleotide_sequence}; [INFO] [stdout] | ^^^^^^^^ ^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `Deserialize`, `Serialize` [INFO] [stdout] --> src/reference/basic_sequence_provider/indexed_fasta.rs:8:13 [INFO] [stdout] | [INFO] [stdout] 8 | use serde::{Serialize, Deserialize}; [INFO] [stdout] | ^^^^^^^^^ ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `Deserialize`, `Serialize` [INFO] [stdout] --> src/reference/basic_sequence_provider/indexed_fasta.rs:8:13 [INFO] [stdout] | [INFO] [stdout] 8 | use serde::{Serialize, Deserialize}; [INFO] [stdout] | ^^^^^^^^^ ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Index` [INFO] [stdout] --> src/reference/basic_sequence_provider/indexed_fasta.rs:9:22 [INFO] [stdout] | [INFO] [stdout] 9 | use bio::io::fasta::{Index, IndexedReader}; [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Index` [INFO] [stdout] --> src/reference/basic_sequence_provider/indexed_fasta.rs:9:22 [INFO] [stdout] | [INFO] [stdout] 9 | use bio::io::fasta::{Index, IndexedReader}; [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::path::Path` [INFO] [stdout] --> src/reference/basic_sequence_provider/indexed_fasta.rs:11:5 [INFO] [stdout] | [INFO] [stdout] 11 | use std::path::Path; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::path::Path` [INFO] [stdout] --> src/reference/basic_sequence_provider/indexed_fasta.rs:11:5 [INFO] [stdout] | [INFO] [stdout] 11 | use std::path::Path; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `super::*` [INFO] [stdout] --> src/reference/basic_sequence_provider/sqlite.rs:199:9 [INFO] [stdout] | [INFO] [stdout] 199 | use super::*; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `AlignmentOperation`, `AlignmentPosition`, `AlignmentResult`, `AlignmentType` [INFO] [stdout] --> src/aligner/interpreter.rs:2:84 [INFO] [stdout] | [INFO] [stdout] 2 | ...tResultsWithLabelByRecordIndex, AlignmentResult, AlignmentPosition, AlignmentOperation, AlignmentType}; [INFO] [stdout] | ^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `IO` [INFO] [stdout] --> src/reference/test_reference.rs:3:59 [INFO] [stdout] | [INFO] [stdout] 3 | use lt_fm_index::{FmIndex, LtFmIndexConfig, LtFmIndexAll, IO}; [INFO] [stdout] | ^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `Deserialize`, `Serialize` [INFO] [stdout] --> src/aligner/interpreter.rs:5:13 [INFO] [stdout] | [INFO] [stdout] 5 | use serde::{Deserialize, Serialize}; [INFO] [stdout] | ^^^^^^^^^^^ ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::collections::HashMap` [INFO] [stdout] --> src/aligner/interpreter.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use std::collections::HashMap; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `AlignmentOperation`, `AlignmentPosition`, `AlignmentResult`, `AlignmentType` [INFO] [stdout] --> src/aligner/interpreter.rs:2:84 [INFO] [stdout] | [INFO] [stdout] 2 | ...tResultsWithLabelByRecordIndex, AlignmentResult, AlignmentPosition, AlignmentOperation, AlignmentType}; [INFO] [stdout] | ^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `AccumulatedLength` [INFO] [stdout] --> src/deprecated/alignment/anchor.rs:2:15 [INFO] [stdout] | [INFO] [stdout] 2 | Database, AccumulatedLength, SearchRange, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `Deserialize`, `Serialize` [INFO] [stdout] --> src/aligner/interpreter.rs:5:13 [INFO] [stdout] | [INFO] [stdout] 5 | use serde::{Deserialize, Serialize}; [INFO] [stdout] | ^^^^^^^^^^^ ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::collections::HashMap` [INFO] [stdout] --> src/aligner/interpreter.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use std::collections::HashMap; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `BacktraceResult`, `CigarReference`, `RefToBacktrace`, `WaveFront` [INFO] [stdout] --> src/deprecated/alignment/anchor.rs:6:5 [INFO] [stdout] | [INFO] [stdout] 6 | WaveFront, AnchorsToPassCheck, CigarReference, BacktraceResult, RefToBacktrace, [INFO] [stdout] | ^^^^^^^^^ ^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `AccumulatedLength` [INFO] [stdout] --> src/deprecated/alignment/anchor.rs:2:15 [INFO] [stdout] | [INFO] [stdout] 2 | Database, AccumulatedLength, SearchRange, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `ReverseIndex` [INFO] [stdout] --> src/deprecated/alignment/anchor.rs:10:28 [INFO] [stdout] | [INFO] [stdout] 10 | Operations, Opr, Clip, ReverseIndex, [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `BacktraceResult`, `CigarReference`, `RefToBacktrace`, `WaveFront` [INFO] [stdout] --> src/deprecated/alignment/anchor.rs:6:5 [INFO] [stdout] | [INFO] [stdout] 6 | WaveFront, AnchorsToPassCheck, CigarReference, BacktraceResult, RefToBacktrace, [INFO] [stdout] | ^^^^^^^^^ ^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `Duration`, `Instant` [INFO] [stdout] --> src/deprecated/alignment/anchor.rs:15:17 [INFO] [stdout] | [INFO] [stdout] 15 | use std::time::{Duration, Instant}; [INFO] [stdout] | ^^^^^^^^ ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `ReverseIndex` [INFO] [stdout] --> src/deprecated/alignment/anchor.rs:10:28 [INFO] [stdout] | [INFO] [stdout] 10 | Operations, Opr, Clip, ReverseIndex, [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Duration` [INFO] [stdout] --> src/deprecated/alignment/anchor.rs:15:17 [INFO] [stdout] | [INFO] [stdout] 15 | use std::time::{Duration, Instant}; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Penalty` [INFO] [stdout] --> src/deprecated/alignment/dwfa.rs:1:58 [INFO] [stdout] | [INFO] [stdout] 1 | use crate::deprecated::{SequenceLength, OperationLength, Penalty}; [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `AlignmentResult` [INFO] [stdout] --> src/deprecated/alignment/dwfa.rs:2:24 [INFO] [stdout] | [INFO] [stdout] 2 | use super::{Penalties, AlignmentResult}; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Penalty` [INFO] [stdout] --> src/deprecated/alignment/dwfa.rs:1:58 [INFO] [stdout] | [INFO] [stdout] 1 | use crate::deprecated::{SequenceLength, OperationLength, Penalty}; [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::path::Path` [INFO] [stdout] --> src/deprecated/io/fasta.rs:1:5 [INFO] [stdout] | [INFO] [stdout] 1 | use std::path::Path; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `AlignmentResult` [INFO] [stdout] --> src/deprecated/alignment/dwfa.rs:2:24 [INFO] [stdout] | [INFO] [stdout] 2 | use super::{Penalties, AlignmentResult}; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `Read`, `Write`, `fs::read` [INFO] [stdout] --> src/deprecated/io/fasta.rs:2:11 [INFO] [stdout] | [INFO] [stdout] 2 | use std::{fs::read, io::{Read, Write, BufReader}}; [INFO] [stdout] | ^^^^^^^^ ^^^^ ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `crate::*` [INFO] [stdout] --> src/deprecated/alignment/dwfa.rs:586:9 [INFO] [stdout] | [INFO] [stdout] 586 | use crate::*; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `bio::io::fasta::IndexedReader` [INFO] [stdout] --> src/deprecated/io/fasta.rs:7:5 [INFO] [stdout] | [INFO] [stdout] 7 | use bio::io::fasta::IndexedReader; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Duration` [INFO] [stdout] --> src/deprecated/alignment.rs:151:21 [INFO] [stdout] | [INFO] [stdout] 151 | use std::time::{Duration, Instant}; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::path::Path` [INFO] [stdout] --> src/deprecated/io/fasta.rs:1:5 [INFO] [stdout] | [INFO] [stdout] 1 | use std::path::Path; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `BufReader`, `Read`, `Write`, `fs::read` [INFO] [stdout] --> src/deprecated/io/index.rs:2:11 [INFO] [stdout] | [INFO] [stdout] 2 | use std::{fs::read, io::{Read, Write, BufReader}}; [INFO] [stdout] | ^^^^^^^^ ^^^^ ^^^^^ ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `Read`, `Write`, `fs::read` [INFO] [stdout] --> src/deprecated/io/fasta.rs:2:11 [INFO] [stdout] | [INFO] [stdout] 2 | use std::{fs::read, io::{Read, Write, BufReader}}; [INFO] [stdout] | ^^^^^^^^ ^^^^ ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::fs::File` [INFO] [stdout] --> src/deprecated/io/index.rs:3:5 [INFO] [stdout] | [INFO] [stdout] 3 | use std::fs::File; [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `FmIndex` [INFO] [stdout] --> src/deprecated/io/index.rs:56:19 [INFO] [stdout] | [INFO] [stdout] 56 | use lt_fm_index::{FmIndex, LtFmIndexAll, IO}; [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `bio::io::fasta::IndexedReader` [INFO] [stdout] --> src/deprecated/io/fasta.rs:7:5 [INFO] [stdout] | [INFO] [stdout] 7 | use bio::io::fasta::IndexedReader; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `crate::deprecated::utils::get_reverse_complement` [INFO] [stdout] --> src/deprecated/database/sequence_provider.rs:1:5 [INFO] [stdout] | [INFO] [stdout] 1 | use crate::deprecated::utils::get_reverse_complement; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `BufReader`, `Read`, `Write`, `fs::read` [INFO] [stdout] --> src/deprecated/io/index.rs:2:11 [INFO] [stdout] | [INFO] [stdout] 2 | use std::{fs::read, io::{Read, Write, BufReader}}; [INFO] [stdout] | ^^^^^^^^ ^^^^ ^^^^^ ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `FastaRecords`, `fasta_records` [INFO] [stdout] --> src/deprecated/database/sequence_provider.rs:2:36 [INFO] [stdout] | [INFO] [stdout] 2 | use crate::deprecated::io::fasta::{FastaRecords, fasta_records}; [INFO] [stdout] | ^^^^^^^^^^^^ ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::fs::File` [INFO] [stdout] --> src/deprecated/io/index.rs:3:5 [INFO] [stdout] | [INFO] [stdout] 3 | use std::fs::File; [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `read_lt_fm_index_from_file_path`, `read_lt_fm_index_from_inferred_path` [INFO] [stdout] --> src/deprecated/database/sequence_provider.rs:3:36 [INFO] [stdout] | [INFO] [stdout] 3 | use crate::deprecated::io::index::{read_lt_fm_index_from_file_path, read_lt_fm_index_from_inferred_path}; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `FmIndex` [INFO] [stdout] --> src/deprecated/io/index.rs:56:19 [INFO] [stdout] | [INFO] [stdout] 56 | use lt_fm_index::{FmIndex, LtFmIndexAll, IO}; [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `crate::deprecated::utils::get_reverse_complement` [INFO] [stdout] --> src/deprecated/database/sequence_provider.rs:1:5 [INFO] [stdout] | [INFO] [stdout] 1 | use crate::deprecated::utils::get_reverse_complement; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `Deserialize`, `Serialize` [INFO] [stdout] --> src/deprecated/database/sequence_provider.rs:6:13 [INFO] [stdout] | [INFO] [stdout] 6 | use serde::{Serialize, Deserialize}; [INFO] [stdout] | ^^^^^^^^^ ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `FastaRecords`, `fasta_records` [INFO] [stdout] --> src/deprecated/database/sequence_provider.rs:2:36 [INFO] [stdout] | [INFO] [stdout] 2 | use crate::deprecated::io::fasta::{FastaRecords, fasta_records}; [INFO] [stdout] | ^^^^^^^^^^^^ ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `read_lt_fm_index_from_file_path`, `read_lt_fm_index_from_inferred_path` [INFO] [stdout] --> src/deprecated/database/sequence_provider/memory.rs:3:36 [INFO] [stdout] | [INFO] [stdout] 3 | use crate::deprecated::io::index::{read_lt_fm_index_from_file_path, read_lt_fm_index_from_inferred_path}; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::default` [INFO] [stdout] --> src/deprecated/database/sequence_provider/fasta.rs:1:5 [INFO] [stdout] | [INFO] [stdout] 1 | use std::default; [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `read_lt_fm_index_from_file_path`, `read_lt_fm_index_from_inferred_path` [INFO] [stdout] --> src/deprecated/database/sequence_provider.rs:3:36 [INFO] [stdout] | [INFO] [stdout] 3 | use crate::deprecated::io::index::{read_lt_fm_index_from_file_path, read_lt_fm_index_from_inferred_path}; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::path::Path` [INFO] [stdout] --> src/deprecated/database/sequence_provider/fasta.rs:4:5 [INFO] [stdout] | [INFO] [stdout] 4 | use std::path::Path; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `Deserialize`, `Serialize` [INFO] [stdout] --> src/deprecated/database/sequence_provider.rs:6:13 [INFO] [stdout] | [INFO] [stdout] 6 | use serde::{Serialize, Deserialize}; [INFO] [stdout] | ^^^^^^^^^ ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Index` [INFO] [stdout] --> src/deprecated/database/sequence_provider/fasta.rs:9:22 [INFO] [stdout] | [INFO] [stdout] 9 | use bio::io::fasta::{Index, IndexedReader}; [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `read_lt_fm_index_from_file_path`, `read_lt_fm_index_from_inferred_path` [INFO] [stdout] --> src/deprecated/database/sequence_provider/memory.rs:3:36 [INFO] [stdout] | [INFO] [stdout] 3 | use crate::deprecated::io::index::{read_lt_fm_index_from_file_path, read_lt_fm_index_from_inferred_path}; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Error` [INFO] [stdout] --> src/deprecated.rs:18:22 [INFO] [stdout] | [INFO] [stdout] 18 | use anyhow::{Result, Error, anyhow}; [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::default` [INFO] [stdout] --> src/deprecated/database/sequence_provider/fasta.rs:1:5 [INFO] [stdout] | [INFO] [stdout] 1 | use std::default; [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::path::Path` [INFO] [stdout] --> src/deprecated/database/sequence_provider/fasta.rs:4:5 [INFO] [stdout] | [INFO] [stdout] 4 | use std::path::Path; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Index` [INFO] [stdout] --> src/deprecated/database/sequence_provider/fasta.rs:9:22 [INFO] [stdout] | [INFO] [stdout] 9 | use bio::io::fasta::{Index, IndexedReader}; [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `crate::*` [INFO] [stdout] --> src/deprecated/database/sequence_provider/fasta.rs:172:9 [INFO] [stdout] | [INFO] [stdout] 172 | use crate::*; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `crate::*` [INFO] [stdout] --> src/deprecated/database.rs:204:9 [INFO] [stdout] | [INFO] [stdout] 204 | use crate::*; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Error` [INFO] [stdout] --> src/deprecated.rs:18:22 [INFO] [stdout] | [INFO] [stdout] 18 | use anyhow::{Result, Error, anyhow}; [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `super::SequenceProvider` [INFO] [stdout] --> src/deprecated/database/sequence_provider/fasta.rs:6:5 [INFO] [stdout] | [INFO] [stdout] 6 | use super::SequenceProvider; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `query_length` [INFO] [stdout] --> src/algorithm/local/anchoring/preset.rs:137:9 [INFO] [stdout] | [INFO] [stdout] 137 | query_length: usize, [INFO] [stdout] | ^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_query_length` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `record_length` [INFO] [stdout] --> src/algorithm/local/anchoring/preset.rs:138:9 [INFO] [stdout] | [INFO] [stdout] 138 | record_length: usize, [INFO] [stdout] | ^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_record_length` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: value assigned to `pre_offset` is never read [INFO] [stdout] --> src/reference/basic_sequence_provider/indexed_fasta/fai.rs:16:13 [INFO] [stdout] | [INFO] [stdout] 16 | let mut pre_offset = 0; [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_assignments)]` on by default [INFO] [stdout] = help: maybe it is overwritten before being read? [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: value assigned to `pre_is_name` is never read [INFO] [stdout] --> src/reference/basic_sequence_provider/indexed_fasta/fai.rs:17:13 [INFO] [stdout] | [INFO] [stdout] 17 | let mut pre_is_name = false; [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = help: maybe it is overwritten before being read? [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `err` [INFO] [stdout] --> src/deprecated/io/index.rs:63:13 [INFO] [stdout] | [INFO] [stdout] 63 | Err(err) => Err("err".to_string()) [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_err` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `err` [INFO] [stdout] --> src/deprecated/io/index.rs:75:13 [INFO] [stdout] | [INFO] [stdout] 75 | Err(err) => Err("err".to_string()) [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_err` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `file_path` [INFO] [stdout] --> src/deprecated/database.rs:99:42 [INFO] [stdout] | [INFO] [stdout] 99 | pub fn load>(file_path: &str, sequence_provider: &'a P) { [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_file_path` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `sequence_provider` [INFO] [stdout] --> src/deprecated/database.rs:99:59 [INFO] [stdout] | [INFO] [stdout] 99 | pub fn load>(file_path: &str, sequence_provider: &'a P) { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_sequence_provider` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `res_for_db` [INFO] [stdout] --> src/deprecated/database.rs:112:13 [INFO] [stdout] | [INFO] [stdout] 112 | let res_for_db = aligner.alignment_with_query( [INFO] [stdout] | ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_res_for_db` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `buf_reader` [INFO] [stdout] --> src/deprecated/database/sequence_provider/fasta.rs:76:13 [INFO] [stdout] | [INFO] [stdout] 76 | let mut buf_reader = io::BufReader::new(f); [INFO] [stdout] | ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_buf_reader` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `buf` [INFO] [stdout] --> src/deprecated/database/sequence_provider/fasta.rs:77:13 [INFO] [stdout] | [INFO] [stdout] 77 | let mut buf = String::new(); [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_buf` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: value assigned to `pre_offset` is never read [INFO] [stdout] --> src/deprecated/database/sequence_provider/fasta.rs:89:13 [INFO] [stdout] | [INFO] [stdout] 89 | let mut pre_offset = 0; [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = help: maybe it is overwritten before being read? [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: value assigned to `pre_is_name` is never read [INFO] [stdout] --> src/deprecated/database/sequence_provider/fasta.rs:90:13 [INFO] [stdout] | [INFO] [stdout] 90 | let mut pre_is_name = false; [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = help: maybe it is overwritten before being read? [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `super::SequenceProvider` [INFO] [stdout] --> src/deprecated/database/sequence_provider/fasta.rs:6:5 [INFO] [stdout] | [INFO] [stdout] 6 | use super::SequenceProvider; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `query_length` [INFO] [stdout] --> src/algorithm/local/anchoring/preset.rs:137:9 [INFO] [stdout] | [INFO] [stdout] 137 | query_length: usize, [INFO] [stdout] | ^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_query_length` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `record_length` [INFO] [stdout] --> src/algorithm/local/anchoring/preset.rs:138:9 [INFO] [stdout] | [INFO] [stdout] 138 | record_length: usize, [INFO] [stdout] | ^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_record_length` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `spare_penalty_determinant` [INFO] [stdout] --> src/algorithm/local/anchoring/preset.rs:325:13 [INFO] [stdout] | [INFO] [stdout] 325 | let spare_penalty_determinant = SparePenaltyDeterminantPerPattern::new( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_spare_penalty_determinant` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: value assigned to `pre_offset` is never read [INFO] [stdout] --> src/reference/basic_sequence_provider/indexed_fasta/fai.rs:16:13 [INFO] [stdout] | [INFO] [stdout] 16 | let mut pre_offset = 0; [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_assignments)]` on by default [INFO] [stdout] = help: maybe it is overwritten before being read? [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: value assigned to `pre_is_name` is never read [INFO] [stdout] --> src/reference/basic_sequence_provider/indexed_fasta/fai.rs:17:13 [INFO] [stdout] | [INFO] [stdout] 17 | let mut pre_is_name = false; [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = help: maybe it is overwritten before being read? [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `pattern` [INFO] [stdout] --> src/reference/test_reference.rs:56:29 [INFO] [stdout] | [INFO] [stdout] 56 | fn is_searchable(&self, pattern: Sequence) -> bool { [INFO] [stdout] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_pattern` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `kmer_klt` [INFO] [stdout] --> src/deprecated/alignment/anchor.rs:854:13 [INFO] [stdout] | [INFO] [stdout] 854 | let kmer_klt = 13; [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_kmer_klt` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `ssr` [INFO] [stdout] --> src/deprecated/alignment/anchor.rs:855:13 [INFO] [stdout] | [INFO] [stdout] 855 | let ssr = 2; [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_ssr` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `kmer_klt` [INFO] [stdout] --> src/deprecated/alignment.rs:161:13 [INFO] [stdout] | [INFO] [stdout] 161 | let kmer_klt = 13; [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_kmer_klt` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `ssr` [INFO] [stdout] --> src/deprecated/alignment.rs:162:13 [INFO] [stdout] | [INFO] [stdout] 162 | let ssr = 2; [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_ssr` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `err` [INFO] [stdout] --> src/deprecated/io/index.rs:63:13 [INFO] [stdout] | [INFO] [stdout] 63 | Err(err) => Err("err".to_string()) [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_err` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `err` [INFO] [stdout] --> src/deprecated/io/index.rs:75:13 [INFO] [stdout] | [INFO] [stdout] 75 | Err(err) => Err("err".to_string()) [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_err` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `file_path` [INFO] [stdout] --> src/deprecated/database.rs:99:42 [INFO] [stdout] | [INFO] [stdout] 99 | pub fn load>(file_path: &str, sequence_provider: &'a P) { [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_file_path` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `sequence_provider` [INFO] [stdout] --> src/deprecated/database.rs:99:59 [INFO] [stdout] | [INFO] [stdout] 99 | pub fn load>(file_path: &str, sequence_provider: &'a P) { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_sequence_provider` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `res_for_db` [INFO] [stdout] --> src/deprecated/database.rs:112:13 [INFO] [stdout] | [INFO] [stdout] 112 | let res_for_db = aligner.alignment_with_query( [INFO] [stdout] | ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_res_for_db` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `buf_reader` [INFO] [stdout] --> src/deprecated/database/sequence_provider/fasta.rs:76:13 [INFO] [stdout] | [INFO] [stdout] 76 | let mut buf_reader = io::BufReader::new(f); [INFO] [stdout] | ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_buf_reader` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `buf` [INFO] [stdout] --> src/deprecated/database/sequence_provider/fasta.rs:77:13 [INFO] [stdout] | [INFO] [stdout] 77 | let mut buf = String::new(); [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_buf` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: value assigned to `pre_offset` is never read [INFO] [stdout] --> src/deprecated/database/sequence_provider/fasta.rs:89:13 [INFO] [stdout] | [INFO] [stdout] 89 | let mut pre_offset = 0; [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = help: maybe it is overwritten before being read? [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: value assigned to `pre_is_name` is never read [INFO] [stdout] --> src/deprecated/database/sequence_provider/fasta.rs:90:13 [INFO] [stdout] | [INFO] [stdout] 90 | let mut pre_is_name = false; [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = help: maybe it is overwritten before being read? [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `database` [INFO] [stdout] --> src/deprecated/database.rs:218:13 [INFO] [stdout] | [INFO] [stdout] 218 | let database = database_config.create_db(&seq_provider); [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_database` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `result_semi_global` [INFO] [stdout] --> src/lib.rs:106:13 [INFO] [stdout] | [INFO] [stdout] 106 | let result_semi_global: String = aligner.semi_global_alignment_labeled(&mut reference, query).unwrap(); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_result_semi_global` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `result_local` [INFO] [stdout] --> src/lib.rs:108:13 [INFO] [stdout] | [INFO] [stdout] 108 | let result_local: String = aligner.local_alignment_labeled(&mut reference, query).unwrap(); [INFO] [stdout] | ^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_result_local` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/deprecated/database/sequence_provider/fasta.rs:76:9 [INFO] [stdout] | [INFO] [stdout] 76 | let mut buf_reader = io::BufReader::new(f); [INFO] [stdout] | ----^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/deprecated/database/sequence_provider/fasta.rs:77:9 [INFO] [stdout] | [INFO] [stdout] 77 | let mut buf = String::new(); [INFO] [stdout] | ----^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/deprecated/database/sequence_provider/fasta.rs:76:9 [INFO] [stdout] | [INFO] [stdout] 76 | let mut buf_reader = io::BufReader::new(f); [INFO] [stdout] | ----^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/deprecated/database/sequence_provider/fasta.rs:77:9 [INFO] [stdout] | [INFO] [stdout] 77 | let mut buf = String::new(); [INFO] [stdout] | ----^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `add_owned_extension_and_get_right_traverse_candidates` [INFO] [stdout] --> src/algorithm/semi_global/extending.rs:434:8 [INFO] [stdout] | [INFO] [stdout] 434 | fn add_owned_extension_and_get_right_traverse_candidates(&mut self, original_anchor_index: usize, original_owned_extension: &Extensio... [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct is never constructed: `EachPatternMatches` [INFO] [stdout] --> src/algorithm/local/anchoring/preset.rs:207:8 [INFO] [stdout] | [INFO] [stdout] 207 | struct EachPatternMatches(Vec); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `new` [INFO] [stdout] --> src/algorithm/local/anchoring/preset.rs:210:8 [INFO] [stdout] | [INFO] [stdout] 210 | fn new( [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `count_unmatched_pattern` [INFO] [stdout] --> src/algorithm/local/anchoring/preset.rs:220:8 [INFO] [stdout] | [INFO] [stdout] 220 | fn count_unmatched_pattern(&self, start_index: usize, end_index: usize) -> usize { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `fasta_path` [INFO] [stdout] --> src/reference/basic_sequence_provider/indexed_fasta.rs:17:5 [INFO] [stdout] | [INFO] [stdout] 17 | fasta_path: String, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `IndexedFastaProvider` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `label_buffer` [INFO] [stdout] --> src/reference/basic_sequence_provider/indexed_fasta.rs:21:5 [INFO] [stdout] | [INFO] [stdout] 21 | label_buffer: String, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `IndexedFastaProvider` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `getting_sequence_statement` [INFO] [stdout] --> src/reference/basic_sequence_provider/sqlite.rs:184:8 [INFO] [stdout] | [INFO] [stdout] 184 | fn getting_sequence_statement(connection: &Connection) -> Result { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `clear_sequence_buffer` [INFO] [stdout] --> src/reference/basic_sequence_provider/sqlite.rs:192:8 [INFO] [stdout] | [INFO] [stdout] 192 | fn clear_sequence_buffer(&mut self) { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `create_check_points` [INFO] [stdout] --> src/deprecated/alignment/anchor.rs:491:8 [INFO] [stdout] | [INFO] [stdout] 491 | fn create_check_points(anchors_record: &mut Vec, penalties: &Penalties, cutoff: &Cutoff) { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `can_be_connected` [INFO] [stdout] --> src/deprecated/alignment/anchor.rs:508:8 [INFO] [stdout] | [INFO] [stdout] 508 | fn can_be_connected(fore: &Self, hind: &Self, penalties: &Penalties, cutoff: &Cutoff) -> bool { [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `m_fr` [INFO] [stdout] --> src/deprecated/alignment/dwfa.rs:25:5 [INFO] [stdout] | [INFO] [stdout] 25 | m_fr: WfFrPoint, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `WFS` has derived impls for the traits `Debug` and `Clone`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `i_fr` [INFO] [stdout] --> src/deprecated/alignment/dwfa.rs:26:5 [INFO] [stdout] | [INFO] [stdout] 26 | i_fr: WfFrPoint, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `WFS` has derived impls for the traits `Debug` and `Clone`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `d_fr` [INFO] [stdout] --> src/deprecated/alignment/dwfa.rs:27:5 [INFO] [stdout] | [INFO] [stdout] 27 | d_fr: WfFrPoint, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `WFS` has derived impls for the traits `Debug` and `Clone`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `m_bt` [INFO] [stdout] --> src/deprecated/alignment/dwfa.rs:28:5 [INFO] [stdout] | [INFO] [stdout] 28 | m_bt: BackTrace, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `WFS` has derived impls for the traits `Debug` and `Clone`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `i_bt` [INFO] [stdout] --> src/deprecated/alignment/dwfa.rs:29:5 [INFO] [stdout] | [INFO] [stdout] 29 | i_bt: BackTrace, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `WFS` has derived impls for the traits `Debug` and `Clone`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `d_bt` [INFO] [stdout] --> src/deprecated/alignment/dwfa.rs:30:5 [INFO] [stdout] | [INFO] [stdout] 30 | d_bt: BackTrace, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `WFS` has derived impls for the traits `Debug` and `Clone`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: type alias is never used: `CigarReference` [INFO] [stdout] --> src/deprecated/alignment/dwfa.rs:317:1 [INFO] [stdout] | [INFO] [stdout] 317 | pub type CigarReference = (usize, usize); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `in_memory_index` [INFO] [stdout] --> src/deprecated/database.rs:70:5 [INFO] [stdout] | [INFO] [stdout] 70 | in_memory_index: bool, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `reverse_complement` [INFO] [stdout] --> src/deprecated/database.rs:71:5 [INFO] [stdout] | [INFO] [stdout] 71 | reverse_complement: bool, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `only_nucleotide` [INFO] [stdout] --> src/deprecated/database.rs:72:5 [INFO] [stdout] | [INFO] [stdout] 72 | only_nucleotide: bool, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `klt_kmer` [INFO] [stdout] --> src/deprecated/database.rs:73:5 [INFO] [stdout] | [INFO] [stdout] 73 | klt_kmer: usize, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `sa_sampling_ratio` [INFO] [stdout] --> src/deprecated/database.rs:74:5 [INFO] [stdout] | [INFO] [stdout] 74 | sa_sampling_ratio: u64, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `concat` [INFO] [stdout] --> src/deprecated/database/sequence_provider/memory.rs:108:8 [INFO] [stdout] | [INFO] [stdout] 108 | fn concat(records: &Vec, seq_len: usize) -> Vec { [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `fasta_path` [INFO] [stdout] --> src/deprecated/database/sequence_provider/fasta.rs:12:5 [INFO] [stdout] | [INFO] [stdout] 12 | fasta_path: &'a str, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `index_reader` [INFO] [stdout] --> src/deprecated/database/sequence_provider/fasta.rs:13:5 [INFO] [stdout] | [INFO] [stdout] 13 | index_reader: IndexedReader, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `record_count` [INFO] [stdout] --> src/deprecated/database/sequence_provider/fasta.rs:14:5 [INFO] [stdout] | [INFO] [stdout] 14 | record_count: usize, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `new` [INFO] [stdout] --> src/deprecated/database/sequence_provider/fasta.rs:17:8 [INFO] [stdout] | [INFO] [stdout] 17 | fn new(fasta_path: &'a str) -> Result { [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `name` [INFO] [stdout] --> src/deprecated/database/sequence_provider/fasta.rs:33:5 [INFO] [stdout] | [INFO] [stdout] 33 | name: String, [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `FaiOneline` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `length` [INFO] [stdout] --> src/deprecated/database/sequence_provider/fasta.rs:34:5 [INFO] [stdout] | [INFO] [stdout] 34 | length: usize, [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `FaiOneline` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `offset` [INFO] [stdout] --> src/deprecated/database/sequence_provider/fasta.rs:35:5 [INFO] [stdout] | [INFO] [stdout] 35 | offset: usize, [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `FaiOneline` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `linebases` [INFO] [stdout] --> src/deprecated/database/sequence_provider/fasta.rs:36:5 [INFO] [stdout] | [INFO] [stdout] 36 | linebases: usize, [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `FaiOneline` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `linewidth` [INFO] [stdout] --> src/deprecated/database/sequence_provider/fasta.rs:37:5 [INFO] [stdout] | [INFO] [stdout] 37 | linewidth: usize, [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `FaiOneline` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `new` [INFO] [stdout] --> src/deprecated/database/sequence_provider/fasta.rs:40:8 [INFO] [stdout] | [INFO] [stdout] 40 | fn new() -> Self { [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `new` [INFO] [stdout] --> src/deprecated/database/sequence_provider/fasta.rs:50:8 [INFO] [stdout] | [INFO] [stdout] 50 | fn new(fasta_file: &str) -> Result { [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `read_fasta` [INFO] [stdout] --> src/deprecated/database/sequence_provider/fasta.rs:74:4 [INFO] [stdout] | [INFO] [stdout] 74 | fn read_fasta(fasta_path: &str) -> Result<()> { [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `generate_fai_and_count` [INFO] [stdout] --> src/deprecated/database/sequence_provider/fasta.rs:82:4 [INFO] [stdout] | [INFO] [stdout] 82 | fn generate_fai_and_count(fasta_path: &str) -> Result<(Vec, usize)> { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `get_name_from_desc` [INFO] [stdout] --> src/deprecated/database/sequence_provider/fasta.rs:148:4 [INFO] [stdout] | [INFO] [stdout] 148 | fn get_name_from_desc(l: String) -> Result { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: enum is never used: `LineTerminator` [INFO] [stdout] --> src/deprecated/database/sequence_provider/fasta.rs:157:6 [INFO] [stdout] | [INFO] [stdout] 157 | enum LineTerminator { [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `last_bytes` [INFO] [stdout] --> src/deprecated/database/sequence_provider/fasta.rs:162:8 [INFO] [stdout] | [INFO] [stdout] 162 | fn last_bytes(&self) -> usize { [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: bounds on generic parameters are not enforced in type aliases [INFO] [stdout] --> src/core/extending/dwfa.rs:186:24 [INFO] [stdout] | [INFO] [stdout] 186 | pub type Components = Vec<[C; 3]>; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(type_alias_bounds)]` on by default [INFO] [stdout] help: the bound will not be checked when the type alias is used, and should be removed [INFO] [stdout] | [INFO] [stdout] 186 - pub type Components = Vec<[C; 3]>; [INFO] [stdout] 186 + pub type Components = Vec<[C; 3]>; [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/reference/basic_sequence_provider/indexed_fasta/fai.rs:118:9 [INFO] [stdout] | [INFO] [stdout] 118 | self.buf_reader.read_line(&mut self.buffer); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_must_use)]` on by default [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/deprecated/database/sequence_provider/fasta.rs:64:9 [INFO] [stdout] | [INFO] [stdout] 64 | self.buf_reader.read_line(&mut self.buffer); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 104 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `add_owned_extension_and_get_right_traverse_candidates` [INFO] [stdout] --> src/algorithm/semi_global/extending.rs:434:8 [INFO] [stdout] | [INFO] [stdout] 434 | fn add_owned_extension_and_get_right_traverse_candidates(&mut self, original_anchor_index: usize, original_owned_extension: &Extensio... [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct is never constructed: `EachPatternMatches` [INFO] [stdout] --> src/algorithm/local/anchoring/preset.rs:207:8 [INFO] [stdout] | [INFO] [stdout] 207 | struct EachPatternMatches(Vec); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `new` [INFO] [stdout] --> src/algorithm/local/anchoring/preset.rs:210:8 [INFO] [stdout] | [INFO] [stdout] 210 | fn new( [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `count_unmatched_pattern` [INFO] [stdout] --> src/algorithm/local/anchoring/preset.rs:220:8 [INFO] [stdout] | [INFO] [stdout] 220 | fn count_unmatched_pattern(&self, start_index: usize, end_index: usize) -> usize { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `fasta_path` [INFO] [stdout] --> src/reference/basic_sequence_provider/indexed_fasta.rs:17:5 [INFO] [stdout] | [INFO] [stdout] 17 | fasta_path: String, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `IndexedFastaProvider` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `label_buffer` [INFO] [stdout] --> src/reference/basic_sequence_provider/indexed_fasta.rs:21:5 [INFO] [stdout] | [INFO] [stdout] 21 | label_buffer: String, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `IndexedFastaProvider` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `getting_sequence_statement` [INFO] [stdout] --> src/reference/basic_sequence_provider/sqlite.rs:184:8 [INFO] [stdout] | [INFO] [stdout] 184 | fn getting_sequence_statement(connection: &Connection) -> Result { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `clear_sequence_buffer` [INFO] [stdout] --> src/reference/basic_sequence_provider/sqlite.rs:192:8 [INFO] [stdout] | [INFO] [stdout] 192 | fn clear_sequence_buffer(&mut self) { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `test_gcd_calculation_for_penalties` [INFO] [stdout] --> src/aligner.rs:299:8 [INFO] [stdout] | [INFO] [stdout] 299 | fn test_gcd_calculation_for_penalties() { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `create_check_points` [INFO] [stdout] --> src/deprecated/alignment/anchor.rs:491:8 [INFO] [stdout] | [INFO] [stdout] 491 | fn create_check_points(anchors_record: &mut Vec, penalties: &Penalties, cutoff: &Cutoff) { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `can_be_connected` [INFO] [stdout] --> src/deprecated/alignment/anchor.rs:508:8 [INFO] [stdout] | [INFO] [stdout] 508 | fn can_be_connected(fore: &Self, hind: &Self, penalties: &Penalties, cutoff: &Cutoff) -> bool { [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `m_fr` [INFO] [stdout] --> src/deprecated/alignment/dwfa.rs:25:5 [INFO] [stdout] | [INFO] [stdout] 25 | m_fr: WfFrPoint, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `WFS` has derived impls for the traits `Debug` and `Clone`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `i_fr` [INFO] [stdout] --> src/deprecated/alignment/dwfa.rs:26:5 [INFO] [stdout] | [INFO] [stdout] 26 | i_fr: WfFrPoint, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `WFS` has derived impls for the traits `Debug` and `Clone`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `d_fr` [INFO] [stdout] --> src/deprecated/alignment/dwfa.rs:27:5 [INFO] [stdout] | [INFO] [stdout] 27 | d_fr: WfFrPoint, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `WFS` has derived impls for the traits `Debug` and `Clone`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `m_bt` [INFO] [stdout] --> src/deprecated/alignment/dwfa.rs:28:5 [INFO] [stdout] | [INFO] [stdout] 28 | m_bt: BackTrace, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `WFS` has derived impls for the traits `Debug` and `Clone`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `i_bt` [INFO] [stdout] --> src/deprecated/alignment/dwfa.rs:29:5 [INFO] [stdout] | [INFO] [stdout] 29 | i_bt: BackTrace, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `WFS` has derived impls for the traits `Debug` and `Clone`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `d_bt` [INFO] [stdout] --> src/deprecated/alignment/dwfa.rs:30:5 [INFO] [stdout] | [INFO] [stdout] 30 | d_bt: BackTrace, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `WFS` has derived impls for the traits `Debug` and `Clone`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: type alias is never used: `CigarReference` [INFO] [stdout] --> src/deprecated/alignment/dwfa.rs:317:1 [INFO] [stdout] | [INFO] [stdout] 317 | pub type CigarReference = (usize, usize); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `in_memory_index` [INFO] [stdout] --> src/deprecated/database.rs:70:5 [INFO] [stdout] | [INFO] [stdout] 70 | in_memory_index: bool, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `reverse_complement` [INFO] [stdout] --> src/deprecated/database.rs:71:5 [INFO] [stdout] | [INFO] [stdout] 71 | reverse_complement: bool, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `only_nucleotide` [INFO] [stdout] --> src/deprecated/database.rs:72:5 [INFO] [stdout] | [INFO] [stdout] 72 | only_nucleotide: bool, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `klt_kmer` [INFO] [stdout] --> src/deprecated/database.rs:73:5 [INFO] [stdout] | [INFO] [stdout] 73 | klt_kmer: usize, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `sa_sampling_ratio` [INFO] [stdout] --> src/deprecated/database.rs:74:5 [INFO] [stdout] | [INFO] [stdout] 74 | sa_sampling_ratio: u64, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `concat` [INFO] [stdout] --> src/deprecated/database/sequence_provider/memory.rs:108:8 [INFO] [stdout] | [INFO] [stdout] 108 | fn concat(records: &Vec, seq_len: usize) -> Vec { [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `fasta_path` [INFO] [stdout] --> src/deprecated/database/sequence_provider/fasta.rs:12:5 [INFO] [stdout] | [INFO] [stdout] 12 | fasta_path: &'a str, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `index_reader` [INFO] [stdout] --> src/deprecated/database/sequence_provider/fasta.rs:13:5 [INFO] [stdout] | [INFO] [stdout] 13 | index_reader: IndexedReader, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `record_count` [INFO] [stdout] --> src/deprecated/database/sequence_provider/fasta.rs:14:5 [INFO] [stdout] | [INFO] [stdout] 14 | record_count: usize, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `new` [INFO] [stdout] --> src/deprecated/database/sequence_provider/fasta.rs:17:8 [INFO] [stdout] | [INFO] [stdout] 17 | fn new(fasta_path: &'a str) -> Result { [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `read_fasta` [INFO] [stdout] --> src/deprecated/database/sequence_provider/fasta.rs:74:4 [INFO] [stdout] | [INFO] [stdout] 74 | fn read_fasta(fasta_path: &str) -> Result<()> { [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `test_create_db` [INFO] [stdout] --> src/deprecated/database.rs:206:8 [INFO] [stdout] | [INFO] [stdout] 206 | fn test_create_db() { [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: bounds on generic parameters are not enforced in type aliases [INFO] [stdout] --> src/core/extending/dwfa.rs:186:24 [INFO] [stdout] | [INFO] [stdout] 186 | pub type Components = Vec<[C; 3]>; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(type_alias_bounds)]` on by default [INFO] [stdout] help: the bound will not be checked when the type alias is used, and should be removed [INFO] [stdout] | [INFO] [stdout] 186 - pub type Components = Vec<[C; 3]>; [INFO] [stdout] 186 + pub type Components = Vec<[C; 3]>; [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/reference/basic_sequence_provider/indexed_fasta/fai.rs:118:9 [INFO] [stdout] | [INFO] [stdout] 118 | self.buf_reader.read_line(&mut self.buffer); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_must_use)]` on by default [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/deprecated/database/sequence_provider/fasta.rs:64:9 [INFO] [stdout] | [INFO] [stdout] 64 | self.buf_reader.read_line(&mut self.buffer); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 110 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `BenchmarkId`, `Criterion`, `black_box`, `criterion_group`, `criterion_main` [INFO] [stdout] --> benches/benchmark.rs:2:5 [INFO] [stdout] | [INFO] [stdout] 2 | black_box, criterion_group, criterion_main, Criterion, BenchmarkId [INFO] [stdout] | ^^^^^^^^^ ^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^ ^^^^^^^^^ ^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `lt_fm_index::*` [INFO] [stdout] --> benches/benchmark.rs:4:5 [INFO] [stdout] | [INFO] [stdout] 4 | use lt_fm_index::*; [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 2 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 39.63s [INFO] running `Command { std: "docker" "inspect" "2b2ddfc3f9b268985e9c61f50a1d207e3a211be42e24919e449264734076cfab", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "2b2ddfc3f9b268985e9c61f50a1d207e3a211be42e24919e449264734076cfab", kill_on_drop: false }` [INFO] [stdout] 2b2ddfc3f9b268985e9c61f50a1d207e3a211be42e24919e449264734076cfab