[INFO] cloning repository https://github.com/bihealth/var-agg
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/bihealth/var-agg" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbihealth%2Fvar-agg", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbihealth%2Fvar-agg'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 471f9e96eaae18d5d3b9ded56b29fc186f420178
[INFO] checking bihealth/var-agg against master#9a42c6509d399fd205917ebce474b31315c5d3e9 for pr-97427
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbihealth%2Fvar-agg" "/workspace/builds/worker-3/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-3/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/bihealth/var-agg on toolchain 9a42c6509d399fd205917ebce474b31315c5d3e9
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+9a42c6509d399fd205917ebce474b31315c5d3e9" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/bihealth/var-agg
[INFO] finished tweaking git repo https://github.com/bihealth/var-agg
[INFO] tweaked toml for git repo https://github.com/bihealth/var-agg written to /workspace/builds/worker-3/source/Cargo.toml
[INFO] crate git repo https://github.com/bihealth/var-agg already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+9a42c6509d399fd205917ebce474b31315c5d3e9" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded isatty v0.1.8
[INFO] [stderr]   Downloaded version_check v0.1.4
[INFO] [stderr]   Downloaded slog-term v2.4.0
[INFO] [stderr]   Downloaded which v1.0.5
[INFO] [stderr]   Downloaded regex v1.0.4
[INFO] [stderr]   Downloaded yaml-rust v0.3.5
[INFO] [stderr]   Downloaded bytecount v0.3.2
[INFO] [stderr]   Downloaded multimap v0.4.0
[INFO] [stderr]   Downloaded ordered-float v0.5.0
[INFO] [stderr]   Downloaded cfg-if v0.1.5
[INFO] [stderr]   Downloaded lazy_static v1.1.0
[INFO] [stderr]   Downloaded fs-utils v1.1.0
[INFO] [stderr]   Downloaded ieee754 v0.2.2
[INFO] [stderr]   Downloaded log v0.4.5
[INFO] [stderr]   Downloaded serde_derive v1.0.76
[INFO] [stderr]   Downloaded itertools v0.6.5
[INFO] [stderr]   Downloaded regex-syntax v0.6.2
[INFO] [stderr]   Downloaded termcolor v1.0.3
[INFO] [stderr]   Downloaded proc-macro2 v0.4.17
[INFO] [stderr]   Downloaded url v1.7.1
[INFO] [stderr]   Downloaded byteorder v1.2.6
[INFO] [stderr]   Downloaded aho-corasick v0.6.8
[INFO] [stderr]   Downloaded statrs v0.9.0
[INFO] [stderr]   Downloaded cc v1.0.23
[INFO] [stderr]   Downloaded serde v1.0.76
[INFO] [stderr]   Downloaded libc v0.2.43
[INFO] [stderr]   Downloaded utf8-ranges v1.0.1
[INFO] [stderr]   Downloaded quote v0.6.8
[INFO] [stderr]   Downloaded memchr v2.0.2
[INFO] [stderr]   Downloaded slog-async v2.3.0
[INFO] [stderr]   Downloaded proc-macro2 v0.3.5
[INFO] [stderr]   Downloaded bindgen v0.36.1
[INFO] [stderr]   Downloaded clang-sys v0.22.0
[INFO] [stderr]   Downloaded csv v1.0.1
[INFO] [stderr]   Downloaded itertools-num v0.1.2
[INFO] [stderr]   Downloaded slog v2.3.3
[INFO] [stderr]   Downloaded bio-types v0.2.0
[INFO] [stderr]   Downloaded bv v0.7.4
[INFO] [stderr]   Downloaded bio v0.22.0
[INFO] [stderr]   Downloaded ndarray v0.9.1
[INFO] [stderr]   Downloaded rust-htslib v0.21.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:ac0d0aa6ec8ed129e241004a6179c99fa0d2616f50ba759c5b60bd26d0fafa02" "/opt/rustwide/cargo-home/bin/cargo" "+9a42c6509d399fd205917ebce474b31315c5d3e9" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] c9771de58fb72b12ff18136c57a78b66a3efc254eb4f1c33d357f253f02f0f94
[INFO] running `Command { std: "docker" "start" "-a" "c9771de58fb72b12ff18136c57a78b66a3efc254eb4f1c33d357f253f02f0f94", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "c9771de58fb72b12ff18136c57a78b66a3efc254eb4f1c33d357f253f02f0f94", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c9771de58fb72b12ff18136c57a78b66a3efc254eb4f1c33d357f253f02f0f94", kill_on_drop: false }`
[INFO] [stdout] c9771de58fb72b12ff18136c57a78b66a3efc254eb4f1c33d357f253f02f0f94
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:ac0d0aa6ec8ed129e241004a6179c99fa0d2616f50ba759c5b60bd26d0fafa02" "/opt/rustwide/cargo-home/bin/cargo" "+9a42c6509d399fd205917ebce474b31315c5d3e9" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 85d40336565a7cc024f8c4cf635fd3167675850bd7715fc02e3d4d1a7750603d
[INFO] running `Command { std: "docker" "start" "-a" "85d40336565a7cc024f8c4cf635fd3167675850bd7715fc02e3d4d1a7750603d", kill_on_drop: false }`
[INFO] [stderr]    Compiling unicode-xid v0.1.0
[INFO] [stderr]     Checking libc v0.2.43
[INFO] [stderr]    Compiling proc-macro2 v0.4.17
[INFO] [stderr]    Compiling version_check v0.1.4
[INFO] [stderr]    Compiling serde v1.0.76
[INFO] [stderr]    Compiling cc v1.0.23
[INFO] [stderr]    Compiling num-traits v0.2.5
[INFO] [stderr]    Compiling ucd-util v0.1.1
[INFO] [stderr]    Compiling regex v1.0.4
[INFO] [stderr]    Compiling regex v0.2.11
[INFO] [stderr]    Compiling glob v0.2.11
[INFO] [stderr]    Compiling utf8-ranges v1.0.1
[INFO] [stderr]    Compiling quick-error v1.2.2
[INFO] [stderr]    Compiling cfg-if v0.1.5
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling unicode-width v0.1.5
[INFO] [stderr]    Compiling ansi_term v0.11.0
[INFO] [stderr]    Compiling bitflags v1.0.4
[INFO] [stderr]    Compiling termcolor v1.0.3
[INFO] [stderr]    Compiling strsim v0.7.0
[INFO] [stderr]    Compiling num-integer v0.1.39
[INFO] [stderr]    Compiling bindgen v0.36.1
[INFO] [stderr]    Compiling yaml-rust v0.3.5
[INFO] [stderr]     Checking byteorder v1.2.6
[INFO] [stderr]     Checking either v1.5.0
[INFO] [stderr]     Checking matches v0.1.8
[INFO] [stderr]    Compiling matrixmultiply v0.1.14
[INFO] [stderr]    Compiling peeking_take_while v0.1.2
[INFO] [stderr]    Compiling bv v0.7.4
[INFO] [stderr]     Checking void v1.0.2
[INFO] [stderr]     Checking unicode-normalization v0.1.7
[INFO] [stderr]     Checking rawpointer v0.1.0
[INFO] [stderr]    Compiling ndarray v0.9.1
[INFO] [stderr]     Checking lazy_static v0.2.11
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking percent-encoding v1.0.1
[INFO] [stderr]     Checking slog v2.3.3
[INFO] [stderr]     Checking rustc-demangle v0.1.9
[INFO] [stderr]     Checking bit-vec v0.4.4
[INFO] [stderr]     Checking approx v0.1.1
[INFO] [stderr]     Checking take_mut v0.2.2
[INFO] [stderr]     Checking ieee754 v0.2.2
[INFO] [stderr]     Checking bitflags v0.9.1
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]     Checking bytecount v0.3.2
[INFO] [stderr]     Checking shlex v0.1.1
[INFO] [stderr]    Compiling log v0.4.5
[INFO] [stderr]    Compiling humantime v1.1.1
[INFO] [stderr]    Compiling fs-utils v1.1.0
[INFO] [stderr]    Compiling regex-syntax v0.6.2
[INFO] [stderr]    Compiling proc-macro2 v0.3.5
[INFO] [stderr]    Compiling textwrap v0.10.0
[INFO] [stderr]    Compiling regex-syntax v0.5.6
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking memchr v2.0.2
[INFO] [stderr]     Checking rand v0.4.3
[INFO] [stderr]     Checking time v0.1.40
[INFO] [stderr]     Checking isatty v0.1.8
[INFO] [stderr]     Checking atty v0.2.11
[INFO] [stderr]     Checking bit-set v0.4.0
[INFO] [stderr]     Checking itertools v0.6.5
[INFO] [stderr]     Checking term v0.5.1
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]     Checking unicode-bidi v0.3.4
[INFO] [stderr]     Checking unreachable v0.1.1
[INFO] [stderr]    Compiling memchr v1.0.2
[INFO] [stderr]    Compiling which v1.0.5
[INFO] [stderr]    Compiling lazy_static v1.1.0
[INFO] [stderr]     Checking aho-corasick v0.6.8
[INFO] [stderr]     Checking csv-core v0.1.4
[INFO] [stderr]    Compiling quote v0.5.2
[INFO] [stderr] error: could not compile `yaml-rust`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `rustc --crate-name yaml_rust /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/yaml-rust-0.3.5/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no -C debuginfo=2 -C metadata=2a621c0b0eb6e6e4 -C extra-filename=-2a621c0b0eb6e6e4 --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --cap-lints allow --cap-lints=forbid` (signal: 9, SIGKILL: kill)
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: could not compile `regex-syntax`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `rustc --crate-name regex_syntax /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/regex-syntax-0.5.6/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no -C debuginfo=2 -C metadata=976bb9b84fe0b958 -C extra-filename=-976bb9b84fe0b958 --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern ucd_util=/opt/rustwide/target/debug/deps/libucd_util-409a4dac3dbdbcb9.rmeta --cap-lints allow --cap-lints=forbid` (signal: 9, SIGKILL: kill)
[INFO] running `Command { std: "docker" "inspect" "85d40336565a7cc024f8c4cf635fd3167675850bd7715fc02e3d4d1a7750603d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "85d40336565a7cc024f8c4cf635fd3167675850bd7715fc02e3d4d1a7750603d", kill_on_drop: false }`
[INFO] [stdout] 85d40336565a7cc024f8c4cf635fd3167675850bd7715fc02e3d4d1a7750603d