[INFO] cloning repository https://github.com/clinico-omics/preqc-pack [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/clinico-omics/preqc-pack" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fclinico-omics%2Fpreqc-pack", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fclinico-omics%2Fpreqc-pack'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] b4dc6def64d046417c317becefadc86c81bb2e14 [INFO] testing clinico-omics/preqc-pack against master#0d13f6afeba4935499abe0c9a07426c94492c94e for pr-96025 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fclinico-omics%2Fpreqc-pack" "/workspace/builds/worker-10/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-10/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/clinico-omics/preqc-pack on toolchain 0d13f6afeba4935499abe0c9a07426c94492c94e [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+0d13f6afeba4935499abe0c9a07426c94492c94e" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/clinico-omics/preqc-pack [INFO] finished tweaking git repo https://github.com/clinico-omics/preqc-pack [INFO] tweaked toml for git repo https://github.com/clinico-omics/preqc-pack written to /workspace/builds/worker-10/source/Cargo.toml [INFO] crate git repo https://github.com/clinico-omics/preqc-pack already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+0d13f6afeba4935499abe0c9a07426c94492c94e" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... 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"-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+0d13f6afeba4935499abe0c9a07426c94492c94e" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 38e2ff29d2d91b7fbd292de2294b23238250cba55dc8a49ee21e93aec2707f65 [INFO] running `Command { std: "docker" "start" "-a" "38e2ff29d2d91b7fbd292de2294b23238250cba55dc8a49ee21e93aec2707f65", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "38e2ff29d2d91b7fbd292de2294b23238250cba55dc8a49ee21e93aec2707f65", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "38e2ff29d2d91b7fbd292de2294b23238250cba55dc8a49ee21e93aec2707f65", kill_on_drop: false }` [INFO] [stdout] 38e2ff29d2d91b7fbd292de2294b23238250cba55dc8a49ee21e93aec2707f65 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+0d13f6afeba4935499abe0c9a07426c94492c94e" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 9439ac9d68aa68a8f206f68836329b9673bfa25c674de83176ea8104a84a14ec [INFO] running `Command { std: "docker" "start" "-a" "9439ac9d68aa68a8f206f68836329b9673bfa25c674de83176ea8104a84a14ec", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.98 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling autocfg v1.0.1 [INFO] [stderr] Compiling proc-macro2 v1.0.28 [INFO] [stderr] Compiling unicode-xid v0.2.2 [INFO] [stderr] Compiling syn v1.0.74 [INFO] [stderr] Compiling cc v1.0.69 [INFO] [stderr] Compiling version_check v0.9.3 [INFO] [stderr] Compiling once_cell v1.8.0 [INFO] [stderr] Compiling memchr v2.4.0 [INFO] [stderr] Compiling log v0.4.14 [INFO] [stderr] Compiling scopeguard v1.1.0 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling pin-project-lite v0.2.7 [INFO] [stderr] Compiling serde_derive v1.0.127 [INFO] [stderr] Compiling spin v0.5.2 [INFO] [stderr] Compiling futures-core v0.3.16 [INFO] [stderr] Compiling bytes v1.0.1 [INFO] [stderr] Compiling untrusted v0.7.1 [INFO] [stderr] Compiling itoa v0.4.7 [INFO] [stderr] Compiling typenum v1.13.0 [INFO] [stderr] Compiling serde v1.0.127 [INFO] [stderr] Compiling proc-macro-hack v0.5.19 [INFO] [stderr] Compiling smallvec v1.6.1 [INFO] [stderr] Compiling futures-sink v0.3.16 [INFO] [stderr] Compiling proc-macro-nested v0.1.7 [INFO] [stderr] Compiling hashbrown v0.11.2 [INFO] [stderr] Compiling futures-channel v0.3.16 [INFO] [stderr] Compiling futures-task v0.3.16 [INFO] [stderr] Compiling fnv v1.0.7 [INFO] [stderr] Compiling matches v0.1.8 [INFO] [stderr] Compiling ryu v1.0.5 [INFO] [stderr] Compiling futures-io v0.3.16 [INFO] [stderr] Compiling ppv-lite86 v0.2.10 [INFO] [stderr] Compiling slab v0.4.4 [INFO] [stderr] Compiling tinyvec_macros v0.1.0 [INFO] [stderr] Compiling pin-utils v0.1.0 [INFO] [stderr] Compiling serde_json v1.0.66 [INFO] [stderr] Compiling crossbeam-utils v0.8.5 [INFO] [stderr] Compiling percent-encoding v2.1.0 [INFO] [stderr] Compiling httparse v1.4.1 [INFO] 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[stderr] Compiling crypto-mac v0.8.0 [INFO] [stderr] Compiling rand v0.8.4 [INFO] [stderr] Compiling hmac v0.10.1 [INFO] [stderr] Compiling sha2 v0.9.5 [INFO] [stderr] Compiling md-5 v0.9.1 [INFO] [stderr] Compiling blake2 v0.9.1 [INFO] [stderr] Compiling url v2.2.2 [INFO] [stderr] Compiling regex v1.5.4 [INFO] [stderr] Compiling chrono v0.4.19 [INFO] [stderr] Compiling dlv-list v0.2.3 [INFO] [stderr] Compiling ordered-multimap v0.3.1 [INFO] [stderr] Compiling rust-ini v0.16.1 [INFO] [stderr] Compiling stderrlog v0.4.3 [INFO] [stderr] Compiling webpki v0.21.4 [INFO] [stderr] Compiling sct v0.6.1 [INFO] [stderr] Compiling rustls v0.19.1 [INFO] [stderr] Compiling rustls v0.18.1 [INFO] [stderr] Compiling webpki-roots v0.19.0 [INFO] [stderr] Compiling webpki-roots v0.21.1 [INFO] [stderr] Compiling tokio-macros v1.3.0 [INFO] [stderr] Compiling thiserror-impl v1.0.26 [INFO] [stderr] Compiling maybe-async v0.2.6 [INFO] [stderr] Compiling structopt-derive v0.4.15 [INFO] [stderr] Compiling thiserror v1.0.26 [INFO] [stderr] Compiling structopt v0.3.22 [INFO] [stderr] Compiling futures-executor v0.3.16 [INFO] [stderr] Compiling futures v0.3.16 [INFO] [stderr] Compiling tokio-util v0.6.7 [INFO] [stderr] Compiling tokio-rustls v0.22.0 [INFO] [stderr] Compiling tokio-stream v0.1.7 [INFO] [stderr] Compiling h2 v0.3.3 [INFO] [stderr] Compiling lz4 v1.23.2 [INFO] [stderr] Compiling fastq v0.6.0 [INFO] [stderr] Compiling serde_urlencoded v0.7.0 [INFO] [stderr] Compiling serde-xml-rs v0.4.1 [INFO] [stderr] Compiling serde_bytes v0.11.5 [INFO] [stderr] Compiling uuid v0.8.2 [INFO] [stderr] Compiling attohttpc v0.16.3 [INFO] [stderr] Compiling bson v2.1.0 [INFO] [stderr] Compiling hyper v0.14.11 [INFO] [stderr] Compiling aws-creds v0.26.0 [INFO] [stderr] Compiling hyper-rustls v0.22.1 [INFO] [stderr] Compiling reqwest v0.11.4 [INFO] [stderr] Compiling rust-s3 v0.27.0-rc4 [INFO] [stderr] Compiling preqc-pack v0.1.2 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `blake2::Blake2b` [INFO] [stdout] --> src/qc/mislabeling.rs:1:5 [INFO] [stdout] | [INFO] [stdout] 1 | use blake2::Blake2b; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `md5::Md5` [INFO] [stdout] --> src/qc/mislabeling.rs:2:5 [INFO] [stdout] | [INFO] [stdout] 2 | use md5::Md5; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `Deserialize`, `Serialize` [INFO] [stdout] --> src/qc/util.rs:1:13 [INFO] [stdout] | [INFO] [stdout] 1 | use serde::{Deserialize, Serialize}; [INFO] [stdout] | ^^^^^^^^^^^ ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `log::*` [INFO] [stdout] --> src/qc/hasher.rs:3:5 [INFO] [stdout] | [INFO] [stdout] 3 | use log::*; [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `add_to_a_count` [INFO] [stdout] --> src/qc/fastqc.rs:528:6 [INFO] [stdout] | [INFO] [stdout] 528 | fn add_to_a_count(&mut self, a_count: usize) { [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `add_to_t_count` [INFO] [stdout] --> src/qc/fastqc.rs:532:6 [INFO] [stdout] | [INFO] [stdout] 532 | fn add_to_t_count(&mut self, t_count: usize) { [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `add_to_c_count` [INFO] [stdout] --> src/qc/fastqc.rs:536:6 [INFO] [stdout] | [INFO] [stdout] 536 | fn add_to_c_count(&mut self, c_count: usize) { [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `add_to_g_count` [INFO] [stdout] --> src/qc/fastqc.rs:540:6 [INFO] [stdout] | [INFO] [stdout] 540 | fn add_to_g_count(&mut self, g_count: usize) { [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `add_to_n_count` [INFO] [stdout] --> src/qc/fastqc.rs:544:6 [INFO] [stdout] | [INFO] [stdout] 544 | fn add_to_n_count(&mut self, n_count: usize) { [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `length` [INFO] [stdout] --> src/qc/mislabeling.rs:14:3 [INFO] [stdout] | [INFO] [stdout] 14 | length: usize, [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] note: `VAFMatrix` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] --> src/qc/mislabeling.rs:11:10 [INFO] [stdout] | [INFO] [stdout] 11 | #[derive(Debug, Serialize, Deserialize, Clone)] [INFO] [stdout] | ^^^^^ ^^^^^ [INFO] [stdout] = note: this warning originates in the derive macro `Debug` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `hash` [INFO] [stdout] --> src/qc/mislabeling.rs:149:6 [INFO] [stdout] | [INFO] [stdout] 149 | fn hash(&self, seq: &[u8]) -> String [INFO] [stdout] | ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 11 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 38.22s [INFO] running `Command { std: "docker" "inspect" "9439ac9d68aa68a8f206f68836329b9673bfa25c674de83176ea8104a84a14ec", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "9439ac9d68aa68a8f206f68836329b9673bfa25c674de83176ea8104a84a14ec", kill_on_drop: false }` [INFO] [stdout] 9439ac9d68aa68a8f206f68836329b9673bfa25c674de83176ea8104a84a14ec [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+0d13f6afeba4935499abe0c9a07426c94492c94e" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] c0b5d400363881a6620a7313a5cd25afdaba6f453b559587a9db98dd4e58a062 [INFO] running `Command { std: "docker" "start" "-a" "c0b5d400363881a6620a7313a5cd25afdaba6f453b559587a9db98dd4e58a062", kill_on_drop: false }` [INFO] [stdout] warning: unused import: `blake2::Blake2b` [INFO] [stdout] --> src/qc/mislabeling.rs:1:5 [INFO] [stdout] | [INFO] [stdout] 1 | use blake2::Blake2b; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `md5::Md5` [INFO] [stdout] --> src/qc/mislabeling.rs:2:5 [INFO] [stdout] | [INFO] [stdout] 2 | use md5::Md5; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `Deserialize`, `Serialize` [INFO] [stdout] --> src/qc/util.rs:1:13 [INFO] [stdout] | [INFO] [stdout] 1 | use serde::{Deserialize, Serialize}; [INFO] [stdout] | ^^^^^^^^^^^ ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `log::*` [INFO] [stdout] --> src/qc/hasher.rs:3:5 [INFO] [stdout] | [INFO] [stdout] 3 | use log::*; [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `add_to_a_count` [INFO] [stdout] --> src/qc/fastqc.rs:528:6 [INFO] [stdout] | [INFO] [stdout] 528 | fn add_to_a_count(&mut self, a_count: usize) { [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `add_to_t_count` [INFO] [stdout] --> src/qc/fastqc.rs:532:6 [INFO] [stdout] | [INFO] [stdout] 532 | fn add_to_t_count(&mut self, t_count: usize) { [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `add_to_c_count` [INFO] [stdout] --> src/qc/fastqc.rs:536:6 [INFO] [stdout] | [INFO] [stdout] 536 | fn add_to_c_count(&mut self, c_count: usize) { [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `add_to_g_count` [INFO] [stdout] --> src/qc/fastqc.rs:540:6 [INFO] [stdout] | [INFO] [stdout] 540 | fn add_to_g_count(&mut self, g_count: usize) { [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `add_to_n_count` [INFO] [stdout] --> src/qc/fastqc.rs:544:6 [INFO] [stdout] | [INFO] [stdout] 544 | fn add_to_n_count(&mut self, n_count: usize) { [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `length` [INFO] [stdout] --> src/qc/mislabeling.rs:14:3 [INFO] [stdout] | [INFO] [stdout] 14 | length: usize, [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] note: `VAFMatrix` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] --> src/qc/mislabeling.rs:11:10 [INFO] [stdout] | [INFO] [stdout] 11 | #[derive(Debug, Serialize, Deserialize, Clone)] [INFO] [stdout] | ^^^^^ ^^^^^ [INFO] [stdout] = note: this warning originates in the derive macro `Debug` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling preqc-pack v0.1.2 (/opt/rustwide/workdir) [INFO] [stdout] warning: associated function is never used: `hash` [INFO] [stdout] --> src/qc/mislabeling.rs:149:6 [INFO] [stdout] | [INFO] [stdout] 149 | fn hash(&self, seq: &[u8]) -> String [INFO] [stdout] | ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 11 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `indexes` [INFO] [stdout] --> examples/mislabeling.rs:5:18 [INFO] [stdout] | [INFO] [stdout] 5 | let (patterns, indexes, count) = VAFMatrix::read_patterns("data/patterns.bson"); [INFO] [stdout] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_indexes` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `blake2::Blake2b` [INFO] [stdout] --> src/qc/mislabeling.rs:1:5 [INFO] [stdout] | [INFO] [stdout] 1 | use blake2::Blake2b; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `md5::Md5` [INFO] [stdout] --> src/qc/mislabeling.rs:2:5 [INFO] [stdout] | [INFO] [stdout] 2 | use md5::Md5; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `Deserialize`, `Serialize` [INFO] [stdout] --> src/qc/util.rs:1:13 [INFO] [stdout] | [INFO] [stdout] 1 | use serde::{Deserialize, Serialize}; [INFO] [stdout] | ^^^^^^^^^^^ ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `log::*` [INFO] [stdout] --> src/qc/hasher.rs:3:5 [INFO] [stdout] | [INFO] [stdout] 3 | use log::*; [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `add_to_a_count` [INFO] [stdout] --> src/qc/fastqc.rs:528:6 [INFO] [stdout] | [INFO] [stdout] 528 | fn add_to_a_count(&mut self, a_count: usize) { [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `add_to_t_count` [INFO] [stdout] --> src/qc/fastqc.rs:532:6 [INFO] [stdout] | [INFO] [stdout] 532 | fn add_to_t_count(&mut self, t_count: usize) { [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `add_to_c_count` [INFO] [stdout] --> src/qc/fastqc.rs:536:6 [INFO] [stdout] | [INFO] [stdout] 536 | fn add_to_c_count(&mut self, c_count: usize) { [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `add_to_g_count` [INFO] [stdout] --> src/qc/fastqc.rs:540:6 [INFO] [stdout] | [INFO] [stdout] 540 | fn add_to_g_count(&mut self, g_count: usize) { [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `add_to_n_count` [INFO] [stdout] --> src/qc/fastqc.rs:544:6 [INFO] [stdout] | [INFO] [stdout] 544 | fn add_to_n_count(&mut self, n_count: usize) { [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `length` [INFO] [stdout] --> src/qc/mislabeling.rs:14:3 [INFO] [stdout] | [INFO] [stdout] 14 | length: usize, [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] note: `VAFMatrix` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] --> src/qc/mislabeling.rs:11:10 [INFO] [stdout] | [INFO] [stdout] 11 | #[derive(Debug, Serialize, Deserialize, Clone)] [INFO] [stdout] | ^^^^^ ^^^^^ [INFO] [stdout] = note: this warning originates in the derive macro `Debug` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `hash` [INFO] [stdout] --> src/qc/mislabeling.rs:149:6 [INFO] [stdout] | [INFO] [stdout] 149 | fn hash(&self, seq: &[u8]) -> String [INFO] [stdout] | ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 11 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 1 warning emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 10.02s [INFO] [stderr] Executable unittests src/lib.rs (/opt/rustwide/target/debug/deps/preqc_pack-63857da2bd62c670) [INFO] [stderr] Executable unittests src/bin/preqc-pack.rs (/opt/rustwide/target/debug/deps/preqc_pack-a58d36d02f87c642) [INFO] running `Command { std: "docker" "inspect" "c0b5d400363881a6620a7313a5cd25afdaba6f453b559587a9db98dd4e58a062", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c0b5d400363881a6620a7313a5cd25afdaba6f453b559587a9db98dd4e58a062", kill_on_drop: false }` [INFO] [stdout] c0b5d400363881a6620a7313a5cd25afdaba6f453b559587a9db98dd4e58a062 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+0d13f6afeba4935499abe0c9a07426c94492c94e" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] c4445873407e6dd4a6a69326749d8f24e9cfbd80e448ec9324ef84725cde5b75 [INFO] running `Command { std: "docker" "start" "-a" "c4445873407e6dd4a6a69326749d8f24e9cfbd80e448ec9324ef84725cde5b75", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] warning: unused import: `blake2::Blake2b` [INFO] [stderr] --> src/qc/mislabeling.rs:1:5 [INFO] [stderr] | [INFO] [stderr] 1 | use blake2::Blake2b; [INFO] [stderr] | ^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused import: `md5::Md5` [INFO] [stderr] --> src/qc/mislabeling.rs:2:5 [INFO] [stderr] | [INFO] [stderr] 2 | use md5::Md5; [INFO] [stderr] | ^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused imports: `Deserialize`, `Serialize` [INFO] [stderr] --> src/qc/util.rs:1:13 [INFO] [stderr] | [INFO] [stderr] 1 | use serde::{Deserialize, Serialize}; [INFO] [stderr] | ^^^^^^^^^^^ ^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `log::*` [INFO] [stderr] --> src/qc/hasher.rs:3:5 [INFO] [stderr] | [INFO] [stderr] 3 | use log::*; [INFO] [stderr] | ^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: associated function is never used: `add_to_a_count` [INFO] [stderr] --> src/qc/fastqc.rs:528:6 [INFO] [stderr] | [INFO] [stderr] 528 | fn add_to_a_count(&mut self, a_count: usize) { [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` on by default [INFO] [stderr] [INFO] [stderr] warning: associated function is never used: `add_to_t_count` [INFO] [stderr] --> src/qc/fastqc.rs:532:6 [INFO] [stderr] | [INFO] [stderr] 532 | fn add_to_t_count(&mut self, t_count: usize) { [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: associated function is never used: `add_to_c_count` [INFO] [stderr] --> src/qc/fastqc.rs:536:6 [INFO] [stderr] | [INFO] [stderr] 536 | fn add_to_c_count(&mut self, c_count: usize) { [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: associated function is never used: `add_to_g_count` [INFO] [stderr] --> src/qc/fastqc.rs:540:6 [INFO] [stderr] | [INFO] [stderr] 540 | fn add_to_g_count(&mut self, g_count: usize) { [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: associated function is never used: `add_to_n_count` [INFO] [stderr] --> src/qc/fastqc.rs:544:6 [INFO] [stderr] | [INFO] [stderr] 544 | fn add_to_n_count(&mut self, n_count: usize) { [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: field is never read: `length` [INFO] [stderr] --> src/qc/mislabeling.rs:14:3 [INFO] [stderr] | [INFO] [stderr] 14 | length: usize, [INFO] [stderr] | ^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] note: `VAFMatrix` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stderr] --> src/qc/mislabeling.rs:11:10 [INFO] [stderr] | [INFO] [stderr] 11 | #[derive(Debug, Serialize, Deserialize, Clone)] [INFO] [stderr] | ^^^^^ ^^^^^ [INFO] [stderr] = note: this warning originates in the derive macro `Debug` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: associated function is never used: `hash` [INFO] [stderr] --> src/qc/mislabeling.rs:149:6 [INFO] [stderr] | [INFO] [stderr] 149 | fn hash(&self, seq: &[u8]) -> String [INFO] [stderr] | ^^^^ [INFO] [stderr] [INFO] [stderr] warning: `preqc-pack` (lib) generated 11 warnings [INFO] [stderr] warning: `preqc-pack` (lib test) generated 11 warnings (11 duplicates) [INFO] [stderr] warning: unused variable: `indexes` [INFO] [stderr] --> examples/mislabeling.rs:5:18 [INFO] [stderr] | [INFO] [stderr] 5 | let (patterns, indexes, count) = VAFMatrix::read_patterns("data/patterns.bson"); [INFO] [stderr] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_indexes` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_variables)]` on by default [INFO] [stderr] [INFO] [stderr] warning: `preqc-pack` (example "mislabeling") generated 1 warning [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 1.67s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/preqc_pack-63857da2bd62c670) [INFO] [stdout] [INFO] [stdout] running 3 tests [INFO] [stdout] test qc::fastqc::phred_encoding_tests::test_get_fastq_encoding_offset ... ok [INFO] [stdout] test qc::fastqc::phred_encoding_tests::test_phred_encoding ... ok [INFO] [stdout] test qc::fastqc::phred_encoding_tests::test_convert_probability_to_old_illumina_phred ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 3 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/preqc-pack.rs (/opt/rustwide/target/debug/deps/preqc_pack-a58d36d02f87c642) [INFO] [stderr] Doc-tests preqc-pack [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 4 tests [INFO] [stdout] test src/qc/hasher.rs - qc::hasher::process_remote (line 78) - compile ... ok [INFO] [stdout] test src/qc/mislabeling.rs - qc::mislabeling::VAFMatrix::read_patterns (line 37) ... FAILED [INFO] [stdout] test src/qc/fastqc.rs - qc::fastqc::FastQC::merge (line 705) ... ok [INFO] [stdout] test src/qc/fastqc.rs - qc::fastqc::FastQC::process_sequence (line 648) ... ok [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- src/qc/mislabeling.rs - qc::mislabeling::VAFMatrix::read_patterns (line 37) stdout ---- [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-m64" "/tmp/rustdoctestN3TKrm/rust_out.rust_out.89f9f26d-cgu.0.rcgu.o" "/tmp/rustdoctestN3TKrm/rust_out.23o7owdq9udccg6q.rcgu.o" "-Wl,--as-needed" "-L" "/opt/rustwide/target/debug/deps" "-L" "/opt/rustwide/target/debug/deps" "-L" "/opt/rustwide/target/debug/build/lz4-sys-788c047c2159ea25/out" "-L" "/opt/rustwide/target/debug/build/ring-ef6e19fa199af0ef/out" "-L" "/opt/rustwide/rustup-home/toolchains/0d13f6afeba4935499abe0c9a07426c94492c94e/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/libpreqc_pack-4ac06ef671a307c1.rlib" "/opt/rustwide/target/debug/deps/libregex-f8e650a70feede2b.rlib" "/opt/rustwide/target/debug/deps/libaho_corasick-c9eb7174bbf030a9.rlib" "/opt/rustwide/target/debug/deps/libregex_syntax-c25dc19d7487cdf7.rlib" "/opt/rustwide/target/debug/deps/libs3-18b72a4d09598dc7.rlib" "/opt/rustwide/target/debug/deps/libhmac-8287ea395e25776a.rlib" "/opt/rustwide/target/debug/deps/libcrypto_mac-ec7ab993ebbe9a07.rlib" "/opt/rustwide/target/debug/deps/libtokio_stream-c9875c69e2fd620d.rlib" "/opt/rustwide/target/debug/deps/libreqwest-4d64546b5b4b7b60.rlib" "/opt/rustwide/target/debug/deps/libhyper_rustls-92f0e29fa1374bb2.rlib" "/opt/rustwide/target/debug/deps/libserde_urlencoded-f2e0edf791ccbdad.rlib" "/opt/rustwide/target/debug/deps/libwebpki_roots-c4395001433b70f8.rlib" "/opt/rustwide/target/debug/deps/libipnet-552718e39905e137.rlib" "/opt/rustwide/target/debug/deps/libtokio_rustls-80f72ea8a9e655dd.rlib" "/opt/rustwide/target/debug/deps/librustls-1f6c3eed863c0c07.rlib" "/opt/rustwide/target/debug/deps/libmime-f9513972171bf326.rlib" "/opt/rustwide/target/debug/deps/libencoding_rs-fe10152927a6a7c9.rlib" "/opt/rustwide/target/debug/deps/libhyper-3303fe591e033f1a.rlib" "/opt/rustwide/target/debug/deps/libwant-b283267483779076.rlib" "/opt/rustwide/target/debug/deps/libtry_lock-febba4674ec63f92.rlib" "/opt/rustwide/target/debug/deps/libsocket2-0ee17bcc7b18f896.rlib" "/opt/rustwide/target/debug/deps/libh2-32e7c775a8192922.rlib" "/opt/rustwide/target/debug/deps/libtokio_util-145d86692a6b651f.rlib" "/opt/rustwide/target/debug/deps/libhttparse-4f8c5563c920c32f.rlib" "/opt/rustwide/target/debug/deps/libtower_service-a0bac867cff4e01f.rlib" "/opt/rustwide/target/debug/deps/libtracing-14409f25acf3c15f.rlib" "/opt/rustwide/target/debug/deps/libtracing_core-146b4dac50411c12.rlib" "/opt/rustwide/target/debug/deps/libfutures_util-1ff29f4249559ab1.rlib" 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"/opt/rustwide/target/debug/deps/libtinyvec-51723c19b9b07abf.rlib" "/opt/rustwide/target/debug/deps/libtinyvec_macros-ef06cf556416b731.rlib" "/opt/rustwide/target/debug/deps/libunicode_bidi-782591ef91eedc75.rlib" "/opt/rustwide/target/debug/deps/libform_urlencoded-75f6cbc650d29922.rlib" "/opt/rustwide/target/debug/deps/libpercent_encoding-b196e1663297fef1.rlib" "/opt/rustwide/target/debug/deps/libmatches-4395ae20fe1f12ba.rlib" "/opt/rustwide/target/debug/deps/libserde_xml_rs-c3cd4a02b211d387.rlib" "/opt/rustwide/target/debug/deps/libthiserror-d260385abbe71e05.rlib" "/opt/rustwide/target/debug/deps/libxml-26b655784b382005.rlib" "/opt/rustwide/target/debug/deps/libini-a2f205b6586f26d2.rlib" "/opt/rustwide/target/debug/deps/libordered_multimap-5ea596ed482721ab.rlib" "/opt/rustwide/target/debug/deps/libhashbrown-ddc2d61dd60ad672.rlib" "/opt/rustwide/target/debug/deps/libahash-4dd6b377e912496d.rlib" "/opt/rustwide/target/debug/deps/libdlv_list-af51d7de97b96577.rlib" 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"/opt/rustwide/target/debug/deps/libserde_bytes-0b9861d77b9a80c2.rlib" "/opt/rustwide/target/debug/deps/libserde_json-d5fe47152885c56a.rlib" "/opt/rustwide/target/debug/deps/libryu-8c106c7dece5fbd0.rlib" "/opt/rustwide/target/debug/deps/libitoa-13ca333cbc4b8776.rlib" "/opt/rustwide/target/debug/deps/libindexmap-7b2ec8f3aa66da44.rlib" "/opt/rustwide/target/debug/deps/libhashbrown-238efa6a2ed05171.rlib" "/opt/rustwide/target/debug/deps/libchrono-75c3a5481d1d684e.rlib" "/opt/rustwide/target/debug/deps/libnum_integer-fa24cc299d4212ca.rlib" "/opt/rustwide/target/debug/deps/libnum_traits-70cf425f9cc9a314.rlib" "/opt/rustwide/target/debug/deps/libtime-2cf5abcf1dceb72e.rlib" "/opt/rustwide/target/debug/deps/libmd5-aa8acf50e95a0e84.rlib" "/opt/rustwide/target/debug/deps/libblock_buffer-04ea09856e82a02d.rlib" "/opt/rustwide/target/debug/deps/libblake2-e2433eec6f17c89e.rlib" "/opt/rustwide/target/debug/deps/libopaque_debug-b3a531c9eb400c1f.rlib" "/opt/rustwide/target/debug/deps/libcrypto_mac-d8827ee4b4278690.rlib" "/opt/rustwide/target/debug/deps/libsubtle-a8e5daac069a1424.rlib" "/opt/rustwide/target/debug/deps/libdigest-8d3b7dcead2c1665.rlib" "/opt/rustwide/target/debug/deps/libgeneric_array-ca9c687ed0be142a.rlib" "/opt/rustwide/target/debug/deps/libtypenum-6779dcfdd4e12b61.rlib" "/opt/rustwide/target/debug/deps/libserde-b9c0bb24c727570d.rlib" "/opt/rustwide/target/debug/deps/libfastq-d1d12c6b79e26e1c.rlib" "/opt/rustwide/target/debug/deps/libflate2-758cc0026188bde9.rlib" "/opt/rustwide/target/debug/deps/liblibz_sys-2e6d61386e3ce853.rlib" "/opt/rustwide/target/debug/deps/libcrc32fast-aaf29b4979d72532.rlib" "/opt/rustwide/target/debug/deps/libcfg_if-90e3626e3c41eec3.rlib" "/opt/rustwide/target/debug/deps/liblz4-69de819a8b0e3929.rlib" "/opt/rustwide/target/debug/deps/liblz4_sys-bc41a35d4ba9c556.rlib" "/opt/rustwide/target/debug/deps/liblibc-272172f988856a81.rlib" "/opt/rustwide/target/debug/deps/libmemchr-334ead3495f848fb.rlib" "/opt/rustwide/target/debug/deps/liblazy_static-b33cd6b8ee13db74.rlib" "-Wl,--start-group" "/opt/rustwide/rustup-home/toolchains/0d13f6afeba4935499abe0c9a07426c94492c94e/lib/rustlib/x86_64-unknown-linux-gnu/lib/libstd-443e20b28eeed844.rlib" "/opt/rustwide/rustup-home/toolchains/0d13f6afeba4935499abe0c9a07426c94492c94e/lib/rustlib/x86_64-unknown-linux-gnu/lib/libpanic_unwind-3e337470e099b116.rlib" "/opt/rustwide/rustup-home/toolchains/0d13f6afeba4935499abe0c9a07426c94492c94e/lib/rustlib/x86_64-unknown-linux-gnu/lib/libobject-10a87791239bd676.rlib" "/opt/rustwide/rustup-home/toolchains/0d13f6afeba4935499abe0c9a07426c94492c94e/lib/rustlib/x86_64-unknown-linux-gnu/lib/libmemchr-0e6cad6dd623d38e.rlib" "/opt/rustwide/rustup-home/toolchains/0d13f6afeba4935499abe0c9a07426c94492c94e/lib/rustlib/x86_64-unknown-linux-gnu/lib/libaddr2line-9d05dd05a4d51b33.rlib" "/opt/rustwide/rustup-home/toolchains/0d13f6afeba4935499abe0c9a07426c94492c94e/lib/rustlib/x86_64-unknown-linux-gnu/lib/libgimli-a60ff138fe1adfad.rlib" "/opt/rustwide/rustup-home/toolchains/0d13f6afeba4935499abe0c9a07426c94492c94e/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_demangle-0e9344458c09713e.rlib" "/opt/rustwide/rustup-home/toolchains/0d13f6afeba4935499abe0c9a07426c94492c94e/lib/rustlib/x86_64-unknown-linux-gnu/lib/libstd_detect-939385b13e387309.rlib" "/opt/rustwide/rustup-home/toolchains/0d13f6afeba4935499abe0c9a07426c94492c94e/lib/rustlib/x86_64-unknown-linux-gnu/lib/libhashbrown-e3ce420901586b53.rlib" "/opt/rustwide/rustup-home/toolchains/0d13f6afeba4935499abe0c9a07426c94492c94e/lib/rustlib/x86_64-unknown-linux-gnu/lib/libminiz_oxide-546bece8dd1bea42.rlib" "/opt/rustwide/rustup-home/toolchains/0d13f6afeba4935499abe0c9a07426c94492c94e/lib/rustlib/x86_64-unknown-linux-gnu/lib/libadler-9b358af16d7d7aa1.rlib" "/opt/rustwide/rustup-home/toolchains/0d13f6afeba4935499abe0c9a07426c94492c94e/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_alloc-554cd499fe1a3b52.rlib" "/opt/rustwide/rustup-home/toolchains/0d13f6afeba4935499abe0c9a07426c94492c94e/lib/rustlib/x86_64-unknown-linux-gnu/lib/libunwind-fbad2f5de5fb5cb2.rlib" "/opt/rustwide/rustup-home/toolchains/0d13f6afeba4935499abe0c9a07426c94492c94e/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcfg_if-8fec8a74c706e4b4.rlib" "/opt/rustwide/rustup-home/toolchains/0d13f6afeba4935499abe0c9a07426c94492c94e/lib/rustlib/x86_64-unknown-linux-gnu/lib/liblibc-020914c5936c5f85.rlib" "/opt/rustwide/rustup-home/toolchains/0d13f6afeba4935499abe0c9a07426c94492c94e/lib/rustlib/x86_64-unknown-linux-gnu/lib/liballoc-4896c4057dc9553a.rlib" "/opt/rustwide/rustup-home/toolchains/0d13f6afeba4935499abe0c9a07426c94492c94e/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_core-2a6a2797f7a73818.rlib" "/opt/rustwide/rustup-home/toolchains/0d13f6afeba4935499abe0c9a07426c94492c94e/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcore-0e3656b1fda5fd7b.rlib" "-Wl,--end-group" "/opt/rustwide/rustup-home/toolchains/0d13f6afeba4935499abe0c9a07426c94492c94e/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcompiler_builtins-1f103368fa522bc0.rlib" "-Wl,-Bdynamic" "-lz" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-Wl,--eh-frame-hdr" "-Wl,-znoexecstack" "-L" "/opt/rustwide/rustup-home/toolchains/0d13f6afeba4935499abe0c9a07426c94492c94e/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/tmp/rustdoctestN3TKrm/rust_out" "-Wl,--gc-sections" "-pie" "-Wl,-zrelro,-znow" "-nodefaultlibs" [INFO] [stdout] = note: collect2: fatal error: ld terminated with signal 9 [Killed] [INFO] [stdout] compilation terminated. [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to previous error [INFO] [stdout] [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] src/qc/mislabeling.rs - qc::mislabeling::VAFMatrix::read_patterns (line 37) [INFO] [stdout] [INFO] [stdout] test result: FAILED. 3 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out; finished in 9.27s [INFO] [stdout] [INFO] [stderr] error: test failed, to rerun pass '--doc' [INFO] running `Command { std: "docker" "inspect" "c4445873407e6dd4a6a69326749d8f24e9cfbd80e448ec9324ef84725cde5b75", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c4445873407e6dd4a6a69326749d8f24e9cfbd80e448ec9324ef84725cde5b75", kill_on_drop: false }` [INFO] [stdout] c4445873407e6dd4a6a69326749d8f24e9cfbd80e448ec9324ef84725cde5b75