[INFO] cloning repository https://github.com/ban-m/kiley
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/ban-m/kiley" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fban-m%2Fkiley", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fban-m%2Fkiley'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 85f9fcf70c95020110566a045ddadc86e30214ab
[INFO] testing ban-m/kiley against master#0d13f6afeba4935499abe0c9a07426c94492c94e for pr-96025
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fban-m%2Fkiley" "/workspace/builds/worker-63/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-63/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/ban-m/kiley on toolchain 0d13f6afeba4935499abe0c9a07426c94492c94e
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+0d13f6afeba4935499abe0c9a07426c94492c94e" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/ban-m/kiley
[INFO] finished tweaking git repo https://github.com/ban-m/kiley
[INFO] tweaked toml for git repo https://github.com/ban-m/kiley written to /workspace/builds/worker-63/source/Cargo.toml
[INFO] crate git repo https://github.com/ban-m/kiley already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+0d13f6afeba4935499abe0c9a07426c94492c94e" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating git repository `https://github.com/ban-m/edlib-sys.git`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded bindgen v0.50.1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-63/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-63/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+0d13f6afeba4935499abe0c9a07426c94492c94e" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] dcb024c322c3f3fdd7e3c2cb9729a4fbdcdf3bf3c35387692305e3df0e449b7f
[INFO] running `Command { std: "docker" "start" "-a" "dcb024c322c3f3fdd7e3c2cb9729a4fbdcdf3bf3c35387692305e3df0e449b7f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "dcb024c322c3f3fdd7e3c2cb9729a4fbdcdf3bf3c35387692305e3df0e449b7f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "dcb024c322c3f3fdd7e3c2cb9729a4fbdcdf3bf3c35387692305e3df0e449b7f", kill_on_drop: false }`
[INFO] [stdout] dcb024c322c3f3fdd7e3c2cb9729a4fbdcdf3bf3c35387692305e3df0e449b7f
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-63/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-63/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+0d13f6afeba4935499abe0c9a07426c94492c94e" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 89b91f995623e8880156b4cb7556da54442620775d1766b6a014bf9076c686fd
[INFO] running `Command { std: "docker" "start" "-a" "89b91f995623e8880156b4cb7556da54442620775d1766b6a014bf9076c686fd", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.102
[INFO] [stderr]    Compiling cfg-if v1.0.0
[INFO] [stderr]    Compiling autocfg v1.0.1
[INFO] [stderr]    Compiling memchr v2.4.1
[INFO] [stderr]    Compiling lazy_static v1.4.0
[INFO] [stderr]    Compiling log v0.4.14
[INFO] [stderr]    Compiling glob v0.3.0
[INFO] [stderr]    Compiling gimli v0.25.0
[INFO] [stderr]    Compiling adler v1.0.2
[INFO] [stderr]    Compiling version_check v0.1.5
[INFO] [stderr]    Compiling crossbeam-utils v0.8.5
[INFO] [stderr]    Compiling regex-syntax v0.6.25
[INFO] [stderr]    Compiling rustc-demangle v0.1.21
[INFO] [stderr]    Compiling proc-macro2 v0.4.30
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling unicode-width v0.1.8
[INFO] [stderr]    Compiling termcolor v1.1.2
[INFO] [stderr]    Compiling unicode-xid v0.1.0
[INFO] [stderr]    Compiling bitflags v1.3.2
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling strsim v0.8.0
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.5
[INFO] [stderr]    Compiling bindgen v0.50.1
[INFO] [stderr]    Compiling byteorder v1.4.3
[INFO] [stderr]    Compiling ansi_term v0.11.0
[INFO] [stderr]    Compiling scopeguard v1.1.0
[INFO] [stderr]    Compiling shlex v0.1.1
[INFO] [stderr]    Compiling cfg-if v0.1.10
[INFO] [stderr]    Compiling peeking_take_while v0.1.2
[INFO] [stderr]    Compiling rayon-core v1.9.1
[INFO] [stderr]    Compiling ppv-lite86 v0.2.10
[INFO] [stderr]    Compiling humantime v2.1.0
[INFO] [stderr]    Compiling either v1.6.1
[INFO] [stderr]    Compiling bytecount v0.6.2
[INFO] [stderr]    Compiling textwrap v0.11.0
[INFO] [stderr]    Compiling humantime v1.3.0
[INFO] [stderr]    Compiling miniz_oxide v0.4.4
[INFO] [stderr]    Compiling memoffset v0.6.4
[INFO] [stderr]    Compiling rayon v1.5.1
[INFO] [stderr]    Compiling fxhash v0.2.1
[INFO] [stderr]    Compiling nom v4.2.3
[INFO] [stderr]    Compiling crossbeam-channel v0.5.1
[INFO] [stderr]    Compiling clang-sys v0.28.1
[INFO] [stderr]    Compiling quote v0.6.13
[INFO] [stderr]    Compiling aho-corasick v0.7.18
[INFO] [stderr]    Compiling object v0.26.2
[INFO] [stderr]    Compiling crossbeam-deque v0.8.1
[INFO] [stderr]    Compiling jobserver v0.1.24
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling getrandom v0.2.3
[INFO] [stderr]    Compiling num_cpus v1.13.0
[INFO] [stderr]    Compiling clap v2.33.3
[INFO] [stderr]    Compiling rand_core v0.6.3
[INFO] [stderr]    Compiling cc v1.0.70
[INFO] [stderr]    Compiling cexpr v0.3.6
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling rand_xoshiro v0.6.0
[INFO] [stderr]    Compiling rand v0.8.4
[INFO] [stderr]    Compiling regex v1.5.4
[INFO] [stderr]    Compiling backtrace v0.3.61
[INFO] [stderr]    Compiling libloading v0.5.2
[INFO] [stderr]    Compiling addr2line v0.16.0
[INFO] [stderr]    Compiling env_logger v0.6.2
[INFO] [stderr]    Compiling env_logger v0.9.0
[INFO] [stderr]    Compiling failure v0.1.8
[INFO] [stderr]    Compiling which v2.0.1
[INFO] [stderr]    Compiling edlib_sys v0.1.0 (https://github.com/ban-m/edlib-sys.git?branch=master#8c8b085c)
[INFO] [stderr]    Compiling kiley v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 52.85s
[INFO] running `Command { std: "docker" "inspect" "89b91f995623e8880156b4cb7556da54442620775d1766b6a014bf9076c686fd", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "89b91f995623e8880156b4cb7556da54442620775d1766b6a014bf9076c686fd", kill_on_drop: false }`
[INFO] [stdout] 89b91f995623e8880156b4cb7556da54442620775d1766b6a014bf9076c686fd
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-63/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-63/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+0d13f6afeba4935499abe0c9a07426c94492c94e" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 3e73b59f3a54666636de919eb85b7100c2038cf951c2d2b0d049fac1b9093560
[INFO] running `Command { std: "docker" "start" "-a" "3e73b59f3a54666636de919eb85b7100c2038cf951c2d2b0d049fac1b9093560", kill_on_drop: false }`
[INFO] [stderr]    Compiling kiley v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 21.64s
[INFO] [stderr]   Executable unittests src/lib.rs (/opt/rustwide/target/debug/deps/kiley-e8e1a02e23a3e826)
[INFO] [stderr]   Executable unittests src/bin/banded_vs_guided.rs (/opt/rustwide/target/debug/deps/banded_vs_guided-47f669e3adf06579)
[INFO] [stderr]   Executable unittests src/bin/benchmark.rs (/opt/rustwide/target/debug/deps/benchmark-b2095792d5206f69)
[INFO] [stderr]   Executable unittests src/bin/fit_model.rs (/opt/rustwide/target/debug/deps/fit_model-16eb4b8a830a8473)
[INFO] [stderr]   Executable unittests src/bin/kiley.rs (/opt/rustwide/target/debug/deps/kiley-1ea1ac926e447aaf)
[INFO] [stderr]   Executable unittests src/bin/test.rs (/opt/rustwide/target/debug/deps/test-b1a0aa8a3192e465)
[INFO] running `Command { std: "docker" "inspect" "3e73b59f3a54666636de919eb85b7100c2038cf951c2d2b0d049fac1b9093560", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "3e73b59f3a54666636de919eb85b7100c2038cf951c2d2b0d049fac1b9093560", kill_on_drop: false }`
[INFO] [stdout] 3e73b59f3a54666636de919eb85b7100c2038cf951c2d2b0d049fac1b9093560
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-63/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-63/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+0d13f6afeba4935499abe0c9a07426c94492c94e" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 59e1cdc56bece33ec23eb3c767cdf59966293eacad7f8bc791b548348c35383b
[INFO] running `Command { std: "docker" "start" "-a" "59e1cdc56bece33ec23eb3c767cdf59966293eacad7f8bc791b548348c35383b", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 1.78s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/kiley-e8e1a02e23a3e826)
[INFO] [stdout] 
[INFO] [stdout] running 80 tests
[INFO] [stdout] test bialignment::test::edit_dist_ops_check ... ok
[INFO] [stdout] test gphmm::gphmm::default_test ... ok
[INFO] [stdout] test bialignment::test::edit_dist_check ... ok
[INFO] [stdout] test bialignment::test::global_affine_check ... ok
[INFO] [stdout] test gphmm::gphmm::three_state_test ... ok
[INFO] [stdout] test hmm::tests::align ... ok
[INFO] [stdout] test gphmm::gphmm::align_test ... ok
[INFO] [stdout] test hmm::guided::tests::likelihood2 ... ok
[INFO] [stdout] test test::lowcomplexity_kiley ... ok
[INFO] [stdout] test padseq::tests::padseq ... ok
[INFO] [stdout] test op::tests::take_skip ... ok
[INFO] [stdout] test sam::cigar_parse ... ok
[INFO] [stdout] test hmm::tests::forward_short ... ok
[INFO] [stdout] test trialignment::banded::test::one_op ... ok
[INFO] [stdout] test trialignment::banded::test::call_test ... ok
[INFO] [stdout] test bialignment::test::edit_dist_fast_check_short ... ok
[INFO] [stdout] test trialignment::banded::test::it_works ... ok
[INFO] [stdout] test trialignment::naive::test::it_works ... ok
[INFO] [stdout] test trialignment::naive::test::one_op ... ok
[INFO] [stdout] test trialignment::naive::test::call_test ... ok
[INFO] [stdout] test trialignment::banded::test::short_test ... ok
[INFO] [stdout] test bialignment::guided::test::edit_dist_check_iden ... ok
[INFO] [stdout] test trialignment::naive::test::short_test ... ok
[INFO] [stdout] test hmm::guided::tests::update_aln_path_test ... ok
[INFO] [stdout] test hmm::tests::forward_banded_test ... ok
[INFO] [stdout] test hmm::tests::backward_banded_test ... ok
[INFO] [stdout] test bialignment::guided::test::edit_dist_check ... ok
[INFO] [stdout] test bialignment::guided::test::global_check ... ok
[INFO] [stdout] test hmm::guided::tests::align ... ok
[INFO] [stdout] test gphmm::banded::gphmm_banded::transition_prob_test ... ok
[INFO] [stdout] test bialignment::test::naive_edit_dist_modification_check ... ok
[INFO] [stdout] test gphmm::gphmm::likelihood_scaling_test ... ok
[INFO] [stdout] test gphmm::banded::gphmm_banded::observation_prob_test ... ok
[INFO] [stdout] test trialignment::naive::test::random_seq ... ok
[INFO] [stdout] test trialignment::banded::test::random_similar_seq_many ... ok
[INFO] [stdout] test hmm::guided::tests::likelihood ... ok
[INFO] [stdout] test bialignment::test::banded_naive_check ... ok
[INFO] [stdout] test hmm::tests::forward_backward_test ... ok
[INFO] [stderr] error: test failed, to rerun pass '--lib'
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/deps/kiley-e8e1a02e23a3e826` (signal: 9, SIGKILL: kill)
[INFO] running `Command { std: "docker" "inspect" "59e1cdc56bece33ec23eb3c767cdf59966293eacad7f8bc791b548348c35383b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "59e1cdc56bece33ec23eb3c767cdf59966293eacad7f8bc791b548348c35383b", kill_on_drop: false }`
[INFO] [stdout] 59e1cdc56bece33ec23eb3c767cdf59966293eacad7f8bc791b548348c35383b