[INFO] cloning repository https://github.com/anergictcell/atg
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/anergictcell/atg" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fanergictcell%2Fatg", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fanergictcell%2Fatg'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 94e96e624ab4393c6932407bb00a0e12e08ae7f6
[INFO] testing anergictcell/atg against master#0d13f6afeba4935499abe0c9a07426c94492c94e for pr-96025
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fanergictcell%2Fatg" "/workspace/builds/worker-9/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-9/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/anergictcell/atg on toolchain 0d13f6afeba4935499abe0c9a07426c94492c94e
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+0d13f6afeba4935499abe0c9a07426c94492c94e" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/anergictcell/atg
[INFO] finished tweaking git repo https://github.com/anergictcell/atg
[INFO] tweaked toml for git repo https://github.com/anergictcell/atg written to /workspace/builds/worker-9/source/Cargo.toml
[INFO] crate git repo https://github.com/anergictcell/atg already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+0d13f6afeba4935499abe0c9a07426c94492c94e" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded loggerv v0.7.2
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+0d13f6afeba4935499abe0c9a07426c94492c94e" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] b9749003e1d48697dd75b27d0bdf0f9be509be032d6d7f0be7818b6326236eae
[INFO] running `Command { std: "docker" "start" "-a" "b9749003e1d48697dd75b27d0bdf0f9be509be032d6d7f0be7818b6326236eae", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "b9749003e1d48697dd75b27d0bdf0f9be509be032d6d7f0be7818b6326236eae", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b9749003e1d48697dd75b27d0bdf0f9be509be032d6d7f0be7818b6326236eae", kill_on_drop: false }`
[INFO] [stdout] b9749003e1d48697dd75b27d0bdf0f9be509be032d6d7f0be7818b6326236eae
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+0d13f6afeba4935499abe0c9a07426c94492c94e" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 3547e7e34c51c16d112ee54012fda24431efaa648c60a2e7799c9fbbb0baccc5
[INFO] running `Command { std: "docker" "start" "-a" "3547e7e34c51c16d112ee54012fda24431efaa648c60a2e7799c9fbbb0baccc5", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]    Compiling proc-macro2 v1.0.36
[INFO] [stderr]    Compiling unicode-xid v0.2.2
[INFO] [stderr]    Compiling libc v0.2.102
[INFO] [stderr]    Compiling syn v1.0.86
[INFO] [stderr]    Compiling serde_derive v1.0.136
[INFO] [stderr]    Compiling log v0.4.14
[INFO] [stderr]    Compiling serde v1.0.136
[INFO] [stderr]    Compiling cfg-if v1.0.0
[INFO] [stderr]    Compiling unicode-width v0.1.9
[INFO] [stderr]    Compiling ansi_term v0.12.1
[INFO] [stderr]    Compiling ansi_term v0.11.0
[INFO] [stderr]    Compiling strsim v0.8.0
[INFO] [stderr]    Compiling bitflags v1.3.2
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling textwrap v0.11.0
[INFO] [stderr]    Compiling quote v1.0.15
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling clap v2.33.3
[INFO] [stderr]    Compiling loggerv v0.7.2
[INFO] [stderr]    Compiling bincode v1.3.3
[INFO] [stderr]    Compiling atg v0.4.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 14.51s
[INFO] running `Command { std: "docker" "inspect" "3547e7e34c51c16d112ee54012fda24431efaa648c60a2e7799c9fbbb0baccc5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "3547e7e34c51c16d112ee54012fda24431efaa648c60a2e7799c9fbbb0baccc5", kill_on_drop: false }`
[INFO] [stdout] 3547e7e34c51c16d112ee54012fda24431efaa648c60a2e7799c9fbbb0baccc5
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+0d13f6afeba4935499abe0c9a07426c94492c94e" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] ad4af932994409143e5cc09d2640fa352c8ce5b2bd2dc007d9ee111e46cc52a8
[INFO] running `Command { std: "docker" "start" "-a" "ad4af932994409143e5cc09d2640fa352c8ce5b2bd2dc007d9ee111e46cc52a8", kill_on_drop: false }`
[INFO] [stderr]    Compiling atg v0.4.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 3.02s
[INFO] [stderr]   Executable unittests src/lib.rs (/opt/rustwide/target/debug/deps/atg-50ef1972d1b89811)
[INFO] [stderr]   Executable unittests src/main.rs (/opt/rustwide/target/debug/deps/atg-a2d166ac466f4f3c)
[INFO] running `Command { std: "docker" "inspect" "ad4af932994409143e5cc09d2640fa352c8ce5b2bd2dc007d9ee111e46cc52a8", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ad4af932994409143e5cc09d2640fa352c8ce5b2bd2dc007d9ee111e46cc52a8", kill_on_drop: false }`
[INFO] [stdout] ad4af932994409143e5cc09d2640fa352c8ce5b2bd2dc007d9ee111e46cc52a8
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+0d13f6afeba4935499abe0c9a07426c94492c94e" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 135fd0d1c55be012a73cd10c295cdd59194a0117343f93db752e08db6cea54a8
[INFO] running `Command { std: "docker" "start" "-a" "135fd0d1c55be012a73cd10c295cdd59194a0117343f93db752e08db6cea54a8", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.07s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/atg-50ef1972d1b89811)
[INFO] [stdout] 
[INFO] [stdout] running 77 tests
[INFO] [stdout] test fasta::reader::tests::test_fai_errors ... ok
[INFO] [stdout] test fasta::reader::tests::test_fai_reading ... ok
[INFO] [stdout] test fasta::reader::tests::test_fasta_reading ... ok
[INFO] [stdout] test fasta::writer::tests::test_creating_writer ... ok
[INFO] [stdout] test fasta::writer::tests::test_sequence_building ... ok
[INFO] [stdout] test gtf::reader::test_ighm::test_read ... ok
[INFO] [stdout] test gtf::reader::test_nm_201550::test_read ... ok
[INFO] [stdout] test gtf::record::tests::test_attributes_parsing ... ok
[INFO] [stdout] test gtf::reader::test_nm_001385228::test_read ... ok
[INFO] [stdout] test gtf::record::tests::test_single_attribute_parsing ... ok
[INFO] [stdout] test gtf::reader::tests::test_nm_201550 ... ok
[INFO] [stdout] test gtf::reader::tests::test_nm_001365057 ... ok
[INFO] [stdout] test gtf::reader::tests::test_nm_001365408 ... ok
[INFO] [stdout] test models::sequence::tests::test_create_sequence ... ok
[INFO] [stdout] test models::test_codon::test_codon_builder ... ok
[INFO] [stdout] test models::test_start_codon::case_1 ... ok
[INFO] [stdout] test gtf::reader::tests::test_nm_001371720 ... ok
[INFO] [stdout] test gtf::writer::tests::test_nm_001365057 ... ok
[INFO] [stdout] test gtf::writer::tests::test_nm_201550 ... ok
[INFO] [stdout] test models::test_start_codon::case_2 ... ok
[INFO] [stdout] test models::test_start_codon::case_3 ... ok
[INFO] [stdout] test gtf::writer::tests::test_nm_001371720 ... ok
[INFO] [stdout] test models::test_start_codon::case_4 ... ok
[INFO] [stdout] test models::test_start_codon::case_5 ... ok
[INFO] [stdout] test models::test_start_codon::case_6 ... ok
[INFO] [stdout] test models::test_stop_codon::case_1 ... ok
[INFO] [stdout] test models::test_stop_codon::case_2 ... ok
[INFO] [stdout] test models::test_stop_codon::case_3 ... ok
[INFO] [stdout] test models::test_stop_codon::case_4 ... ok
[INFO] [stdout] test gtf::writer::tests::test_nm_001365408 ... ok
[INFO] [stdout] test models::test_stop_codon::case_5 ... ok
[INFO] [stdout] test models::test_stop_codon::case_6 ... ok
[INFO] [stdout] test models::tests::test_frame_addition ... ok
[INFO] [stdout] test models::tests::test_special_transcripts ... ok
[INFO] [stdout] test models::tests::test_transcript ... ok
[INFO] [stdout] test models::transcript::tests::test_cds_coordinates ... ok
[INFO] [stdout] test models::tests::test_exon_downstream_frame ... ok
[INFO] [stdout] test models::transcript::tests::test_exon_coordinates ... ok
[INFO] [stdout] test models::transcript::tests::test_utr3_coordinates ... ok
[INFO] [stdout] test models::transcript::tests::test_utr5_coordinates ... ok
[INFO] [stdout] test models::transcript::tests::test_utr_coordinates ... ok
[INFO] [stdout] test refgene::reader::tests::test_missing_exon_frame ... ok
[INFO] [stdout] test refgene::reader::tests::test_missing_exon_start ... ok
[INFO] [stdout] test refgene::reader::tests::test_missing_exon_stop ... ok
[INFO] [stdout] test refgene::reader::tests::test_nm_001365057 ... ok
[INFO] [stdout] test refgene::reader::tests::test_nm_001365408 ... ok
[INFO] [stdout] test refgene::reader::tests::test_nm_001371720 ... ok
[INFO] [stdout] test refgene::reader::tests::test_nm_201550 ... ok
[INFO] [stdout] test refgene::reader::tests::test_parse_exons_no_cds ... ok
[INFO] [stdout] test refgene::reader::tests::test_wrong_exon_frame ... ok
[INFO] [stdout] test refgene::tests::test_parse_exons_with_cds ... ok
[INFO] [stdout] test refgene::tests::test_transcript_building ... ok
[INFO] [stdout] test refgene::writer::tests::test_nm_001365057 ... ok
[INFO] [stdout] test utils::genomic_relations::test_intersect::test_a_fully_in_b ... ok
[INFO] [stdout] test refgene::writer::tests::test_nm_001365408 ... ok
[INFO] [stdout] test utils::genomic_relations::test_intersect::test_b_fully_in_a ... ok
[INFO] [stdout] test refgene::writer::tests::test_nm_201550 ... ok
[INFO] [stdout] test refgene::writer::tests::test_nm_001371720 ... ok
[INFO] [stdout] test utils::genomic_relations::test_intersect::test_no_overlap ... ok
[INFO] [stdout] test utils::genomic_relations::test_intersect::test_left_overlap ... ok
[INFO] [stdout] test utils::genomic_relations::test_intersect::test_right_overlap ... ok
[INFO] [stdout] test refgene::tests::test_parsing_and_composing ... ok
[INFO] [stdout] test utils::genomic_relations::test_overlap::test_cds_overlap ... ok
[INFO] [stdout] test utils::genomic_relations::test_relation::test_downstream ... ok
[INFO] [stdout] test utils::genomic_relations::test_relation::test_inside ... ok
[INFO] [stdout] test utils::genomic_relations::test_relation::test_match ... ok
[INFO] [stdout] test utils::genomic_relations::test_relation::test_left ... ok
[INFO] [stdout] test utils::genomic_relations::test_relation::test_right ... ok
[INFO] [stdout] test utils::genomic_relations::test_relation::test_overlaps ... ok
[INFO] [stdout] test utils::genomic_relations::test_relation::test_upstream ... ok
[INFO] [stdout] test utils::genomic_relations::test_subtraction::test_case_1 ... ok
[INFO] [stdout] test utils::genomic_relations::test_subtraction::test_case_3 ... ok
[INFO] [stdout] test utils::genomic_relations::test_subtraction::test_case_4 ... ok
[INFO] [stdout] test utils::genomic_relations::test_subtraction::test_case_5 ... ok
[INFO] [stdout] test utils::genomic_relations::test_subtraction::test_case_2 ... ok
[INFO] [stdout] test utils::genomic_relations::test_subtraction::test_case_6 ... ok
[INFO] [stdout] test utils::genomic_relations::test_subtraction::test_case_7 ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 77 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/atg-a2d166ac466f4f3c)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests atg
[INFO] [stdout] 
[INFO] [stdout] running 52 tests
[INFO] [stdout] test src/lib.rs - (line 164) - compile ... ok
[INFO] [stderr] error: test failed, to rerun pass '--doc'
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `rustdoc --edition=2018 --crate-type lib --crate-name atg --test /opt/rustwide/workdir/src/lib.rs -L dependency=/opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern atg=/opt/rustwide/target/debug/deps/libatg-67677921490c12fe.rlib --extern bincode=/opt/rustwide/target/debug/deps/libbincode-348d03adc69ba779.rlib --extern clap=/opt/rustwide/target/debug/deps/libclap-f2764b7096acaa8b.rlib --extern log=/opt/rustwide/target/debug/deps/liblog-41607b4997ff699e.rlib --extern loggerv=/opt/rustwide/target/debug/deps/libloggerv-087749620a62bfef.rlib --extern serde=/opt/rustwide/target/debug/deps/libserde-3d97a0f263f58203.rlib -C embed-bitcode=no --error-format human` (signal: 9, SIGKILL: kill)
[INFO] running `Command { std: "docker" "inspect" "135fd0d1c55be012a73cd10c295cdd59194a0117343f93db752e08db6cea54a8", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "135fd0d1c55be012a73cd10c295cdd59194a0117343f93db752e08db6cea54a8", kill_on_drop: false }`
[INFO] [stdout] 135fd0d1c55be012a73cd10c295cdd59194a0117343f93db752e08db6cea54a8