[INFO] cloning repository https://github.com/0ncorhynchus/pdbstat [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/0ncorhynchus/pdbstat" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F0ncorhynchus%2Fpdbstat", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F0ncorhynchus%2Fpdbstat'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 4ad97d115b0b9b3e9628155b646db596a5063109 [INFO] testing 0ncorhynchus/pdbstat against master#0d13f6afeba4935499abe0c9a07426c94492c94e for pr-96025 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F0ncorhynchus%2Fpdbstat" "/workspace/builds/worker-7/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-7/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/0ncorhynchus/pdbstat on toolchain 0d13f6afeba4935499abe0c9a07426c94492c94e [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+0d13f6afeba4935499abe0c9a07426c94492c94e" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/0ncorhynchus/pdbstat [INFO] finished tweaking git repo https://github.com/0ncorhynchus/pdbstat [INFO] tweaked toml for git repo https://github.com/0ncorhynchus/pdbstat written to /workspace/builds/worker-7/source/Cargo.toml [INFO] crate git repo https://github.com/0ncorhynchus/pdbstat already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+0d13f6afeba4935499abe0c9a07426c94492c94e" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded gcc v0.3.51 [INFO] [stderr] Downloaded cmake v0.1.24 [INFO] [stderr] Downloaded libc v0.2.24 [INFO] [stderr] Downloaded chemfiles v0.7.40 [INFO] [stderr] Downloaded chemfiles-sys v0.7.40 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+0d13f6afeba4935499abe0c9a07426c94492c94e" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 195f2f11bd81b77f7d3d3fc290d5c71a15e6167cc3f7d8c2697123476c51b05a [INFO] running `Command { std: "docker" "start" "-a" "195f2f11bd81b77f7d3d3fc290d5c71a15e6167cc3f7d8c2697123476c51b05a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "195f2f11bd81b77f7d3d3fc290d5c71a15e6167cc3f7d8c2697123476c51b05a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "195f2f11bd81b77f7d3d3fc290d5c71a15e6167cc3f7d8c2697123476c51b05a", kill_on_drop: false }` [INFO] [stdout] 195f2f11bd81b77f7d3d3fc290d5c71a15e6167cc3f7d8c2697123476c51b05a [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+0d13f6afeba4935499abe0c9a07426c94492c94e" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 547cc1345f71683461a2d50f3f941a4bab186553dc601c0e5502bcd71f1d948f [INFO] running `Command { std: "docker" "start" "-a" "547cc1345f71683461a2d50f3f941a4bab186553dc601c0e5502bcd71f1d948f", kill_on_drop: false }` [INFO] [stderr] Compiling gcc v0.3.51 [INFO] [stderr] Compiling libc v0.2.24 [INFO] [stderr] Compiling cmake v0.1.24 [INFO] [stderr] Compiling chemfiles-sys v0.7.40 [INFO] [stderr] error: failed to run custom build command for `chemfiles-sys v0.7.40` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/chemfiles-sys-b200c329757a377f/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] running: "cmake" "/opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.7.40/." "-DBUILD_SHARED_LIBS=OFF" "-DCMAKE_POSITION_INDEPENDENT_CODE=ON" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/chemfiles-sys-78cf6513f9e332ae/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_BUILD_TYPE=Debug" [INFO] [stderr] -- The C compiler identification is GNU 9.4.0 [INFO] [stderr] -- The CXX compiler identification is GNU 9.4.0 [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc -- works [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ -- works [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Unpacking fmt sources [INFO] [stderr] -- Unpacking netcdf sources [INFO] [stderr] -- Unpacking tng sources [INFO] [stderr] -- Check if the system is big endian [INFO] [stderr] -- Searching 16 bit integer [INFO] [stderr] -- Using unsigned short [INFO] [stderr] -- Check if the system is big endian - little endian [INFO] [stderr] -- Unpacking molfiles sources [INFO] [stderr] -- Configuring done [INFO] [stderr] -- Generating done [INFO] [stderr] -- Build files have been written to: /opt/rustwide/target/debug/build/chemfiles-sys-78cf6513f9e332ae/out/build [INFO] [stderr] running: "cmake" "--build" "." "--target" "install" "--config" "Debug" "--" "-j128" [INFO] [stderr] Scanning dependencies of target netcdf3-chemfiles [INFO] [stderr] Scanning dependencies of target chemfiles_files [INFO] [stderr] Scanning dependencies of target molfiles [INFO] [stderr] Scanning dependencies of target fmt [INFO] [stderr] Scanning dependencies of target tng_io [INFO] [stderr] Scanning dependencies of target netcdf [INFO] [stderr] Scanning dependencies of target tng_io_zlib [INFO] [stderr] [ 1%] Building C object chemfiles/external/molfiles/CMakeFiles/molfiles.dir/src/dcdplugin.c.o [INFO] [stderr] [ 3%] Building C object chemfiles/external/tng/CMakeFiles/tng_io_zlib.dir/external/zlib/adler32.c.o [INFO] [stderr] [ 3%] Building CXX object chemfiles/CMakeFiles/chemfiles_files.dir/src/files/BasicFile.cpp.o [INFO] [stderr] [ 4%] Building CXX object chemfiles/CMakeFiles/chemfiles_files.dir/src/files/NcFile.cpp.o [INFO] [stderr] [ 6%] Building C object 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The top-level CMakeLists.txt file must [INFO] [stderr] contain a literal, direct call to the project() command. Add a line of [INFO] [stderr] code such as [INFO] [stderr] [INFO] [stderr] project(ProjectName) [INFO] [stderr] [INFO] [stderr] near the top of the file, but after cmake_minimum_required(). [INFO] [stderr] [INFO] [stderr] CMake is pretending there is a "project(Project)" command on the first [INFO] [stderr] line. [INFO] [stderr] This warning is for project developers. Use -Wno-dev to suppress it. [INFO] [stderr] [INFO] [stderr] CMake Deprecation Warning at chemfiles/CMakeLists.txt:8 (cmake_policy): [INFO] [stderr] The OLD behavior for policy CMP0042 will be removed from a future version [INFO] [stderr] of CMake. [INFO] [stderr] [INFO] [stderr] The cmake-policies(7) manual explains that the OLD behaviors of all [INFO] [stderr] policies are deprecated and that a policy should be set to OLD only under [INFO] [stderr] specific short-term circumstances. Projects should be ported to the NEW [INFO] [stderr] behavior and not rely on setting a policy to OLD. [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles.dir/build.make:167: chemfiles/CMakeFiles/chemfiles.dir/src/Topology.cpp.o] Error 1 [INFO] [stderr] make[2]: *** Waiting for unfinished jobs.... [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles.dir/build.make:297: chemfiles/CMakeFiles/chemfiles.dir/src/capi/trajectory.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles.dir/build.make:271: chemfiles/CMakeFiles/chemfiles.dir/src/capi/selection.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles.dir/build.make:115: chemfiles/CMakeFiles/chemfiles.dir/src/FormatFactory.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles.dir/build.make:310: chemfiles/CMakeFiles/chemfiles.dir/src/formats/Molfile.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles.dir/build.make:323: chemfiles/CMakeFiles/chemfiles.dir/src/formats/NcFormat.cpp.o] Error 1 [INFO] [stderr] make[1]: *** [CMakeFiles/Makefile2:252: chemfiles/CMakeFiles/chemfiles.dir/all] Error 2 [INFO] [stderr] make: *** [Makefile:130: all] Error 2 [INFO] [stderr] thread 'main' panicked at ' [INFO] [stderr] command did not execute successfully, got: exit status: 2 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.24/src/lib.rs:593:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55caae4ffccd - std::backtrace_rs::backtrace::libunwind::trace::h78ac1a8162560622 [INFO] [stderr] at /rustc/0d13f6afeba4935499abe0c9a07426c94492c94e/library/std/src/../../backtrace/src/backtrace/libunwind.rs:93:5 [INFO] [stderr] 1: 0x55caae4ffccd - std::backtrace_rs::backtrace::trace_unsynchronized::h524b37108170e058 [INFO] [stderr] at /rustc/0d13f6afeba4935499abe0c9a07426c94492c94e/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55caae4ffccd - std::sys_common::backtrace::_print_fmt::h6fc64e306477b488 [INFO] [stderr] at /rustc/0d13f6afeba4935499abe0c9a07426c94492c94e/library/std/src/sys_common/backtrace.rs:66:5 [INFO] [stderr] 3: 0x55caae4ffccd - ::fmt::hebf1189a5210d658 [INFO] [stderr] at /rustc/0d13f6afeba4935499abe0c9a07426c94492c94e/library/std/src/sys_common/backtrace.rs:45:22 [INFO] [stderr] 4: 0x55caae51ed8c - core::fmt::write::h2ee1c47f226b9713 [INFO] [stderr] at /rustc/0d13f6afeba4935499abe0c9a07426c94492c94e/library/core/src/fmt/mod.rs:1194:17 [INFO] [stderr] 5: 0x55caae4fcb51 - std::io::Write::write_fmt::h067c33263862d831 [INFO] [stderr] at /rustc/0d13f6afeba4935499abe0c9a07426c94492c94e/library/std/src/io/mod.rs:1655:15 [INFO] [stderr] 6: 0x55caae5014f5 - std::sys_common::backtrace::_print::h4cf4c3a5df78aa1b [INFO] [stderr] at /rustc/0d13f6afeba4935499abe0c9a07426c94492c94e/library/std/src/sys_common/backtrace.rs:48:5 [INFO] [stderr] 7: 0x55caae5014f5 - std::sys_common::backtrace::print::h563fffe6d3b49d9c [INFO] [stderr] at /rustc/0d13f6afeba4935499abe0c9a07426c94492c94e/library/std/src/sys_common/backtrace.rs:35:9 [INFO] [stderr] 8: 0x55caae5014f5 - std::panicking::default_hook::{{closure}}::h011bf968a019e6ec [INFO] [stderr] at /rustc/0d13f6afeba4935499abe0c9a07426c94492c94e/library/std/src/panicking.rs:295:22 [INFO] [stderr] 9: 0x55caae501169 - std::panicking::default_hook::hc87bc2048234ee21 [INFO] [stderr] at /rustc/0d13f6afeba4935499abe0c9a07426c94492c94e/library/std/src/panicking.rs:314:9 [INFO] [stderr] 10: 0x55caae501ac8 - std::panicking::rust_panic_with_hook::h51069032b7e7ea9f [INFO] [stderr] at /rustc/0d13f6afeba4935499abe0c9a07426c94492c94e/library/std/src/panicking.rs:698:17 [INFO] [stderr] 11: 0x55caae501977 - std::panicking::begin_panic_handler::{{closure}}::hd6f7b981150e82ee [INFO] [stderr] at /rustc/0d13f6afeba4935499abe0c9a07426c94492c94e/library/std/src/panicking.rs:588:13 [INFO] [stderr] 12: 0x55caae500184 - std::sys_common::backtrace::__rust_end_short_backtrace::h4e1327824e6ec426 [INFO] [stderr] at /rustc/0d13f6afeba4935499abe0c9a07426c94492c94e/library/std/src/sys_common/backtrace.rs:138:18 [INFO] [stderr] 13: 0x55caae5016a9 - rust_begin_unwind [INFO] [stderr] at /rustc/0d13f6afeba4935499abe0c9a07426c94492c94e/library/std/src/panicking.rs:584:5 [INFO] [stderr] 14: 0x55caae4ad813 - core::panicking::panic_fmt::hab126d972b27847d [INFO] [stderr] at /rustc/0d13f6afeba4935499abe0c9a07426c94492c94e/library/core/src/panicking.rs:142:14 [INFO] [stderr] 15: 0x55caae4b55cd - cmake::fail::h9a63e719bb7a7a06 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.24/src/lib.rs:593:5 [INFO] [stderr] 16: 0x55caae4b5005 - cmake::run::he12ae474111621d7 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.24/src/lib.rs:574:9 [INFO] [stderr] 17: 0x55caae4b2d0d - cmake::Config::build::h28bca48395f8aa5c [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.24/src/lib.rs:481:9 [INFO] [stderr] 18: 0x55caae4adc6e - build_script_build::main::h6e669c11b25edf85 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.7.40/build.rs:19:15 [INFO] [stderr] 19: 0x55caae4aecab - core::ops::function::FnOnce::call_once::h8f6471367a352b39 [INFO] [stderr] at /rustc/0d13f6afeba4935499abe0c9a07426c94492c94e/library/core/src/ops/function.rs:248:5 [INFO] [stderr] 20: 0x55caae4af0de - std::sys_common::backtrace::__rust_begin_short_backtrace::hab029d67ab62aee6 [INFO] [stderr] at /rustc/0d13f6afeba4935499abe0c9a07426c94492c94e/library/std/src/sys_common/backtrace.rs:122:18 [INFO] [stderr] 21: 0x55caae4b0251 - std::rt::lang_start::{{closure}}::h5a38cffa8609bf69 [INFO] [stderr] at /rustc/0d13f6afeba4935499abe0c9a07426c94492c94e/library/std/src/rt.rs:145:18 [INFO] [stderr] 22: 0x55caae4f8d1e - core::ops::function::impls:: for &F>::call_once::h8d241729a720747e [INFO] [stderr] at /rustc/0d13f6afeba4935499abe0c9a07426c94492c94e/library/core/src/ops/function.rs:280:13 [INFO] [stderr] 23: 0x55caae4f8d1e - std::panicking::try::do_call::h622ff1fadfc6e059 [INFO] [stderr] at /rustc/0d13f6afeba4935499abe0c9a07426c94492c94e/library/std/src/panicking.rs:492:40 [INFO] [stderr] 24: 0x55caae4f8d1e - std::panicking::try::hb1bca854da2cb3ad [INFO] [stderr] at /rustc/0d13f6afeba4935499abe0c9a07426c94492c94e/library/std/src/panicking.rs:456:19 [INFO] [stderr] 25: 0x55caae4f8d1e - std::panic::catch_unwind::h9175ffa8b1bf95a9 [INFO] [stderr] at /rustc/0d13f6afeba4935499abe0c9a07426c94492c94e/library/std/src/panic.rs:137:14 [INFO] [stderr] 26: 0x55caae4f8d1e - std::rt::lang_start_internal::{{closure}}::hc2b9ae60f1a88ca1 [INFO] [stderr] at /rustc/0d13f6afeba4935499abe0c9a07426c94492c94e/library/std/src/rt.rs:128:48 [INFO] [stderr] 27: 0x55caae4f8d1e - std::panicking::try::do_call::hcd8114073e1bcd43 [INFO] [stderr] at /rustc/0d13f6afeba4935499abe0c9a07426c94492c94e/library/std/src/panicking.rs:492:40 [INFO] [stderr] 28: 0x55caae4f8d1e - std::panicking::try::h3b951601d049745c [INFO] [stderr] at /rustc/0d13f6afeba4935499abe0c9a07426c94492c94e/library/std/src/panicking.rs:456:19 [INFO] [stderr] 29: 0x55caae4f8d1e - std::panic::catch_unwind::hf4f6657f10046aa0 [INFO] [stderr] at /rustc/0d13f6afeba4935499abe0c9a07426c94492c94e/library/std/src/panic.rs:137:14 [INFO] [stderr] 30: 0x55caae4f8d1e - std::rt::lang_start_internal::h816d524906609e8a [INFO] [stderr] at /rustc/0d13f6afeba4935499abe0c9a07426c94492c94e/library/std/src/rt.rs:128:20 [INFO] [stderr] 31: 0x55caae4b0220 - std::rt::lang_start::h0818c6842a12c745 [INFO] [stderr] at /rustc/0d13f6afeba4935499abe0c9a07426c94492c94e/library/std/src/rt.rs:144:17 [INFO] [stderr] 32: 0x55caae4ae76c - main [INFO] [stderr] 33: 0x7f0437b7b0b3 - __libc_start_main [INFO] [stderr] 34: 0x55caae4ada0e - _start [INFO] [stderr] 35: 0x0 - [INFO] running `Command { std: "docker" "inspect" "547cc1345f71683461a2d50f3f941a4bab186553dc601c0e5502bcd71f1d948f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "547cc1345f71683461a2d50f3f941a4bab186553dc601c0e5502bcd71f1d948f", kill_on_drop: false }` [INFO] [stdout] 547cc1345f71683461a2d50f3f941a4bab186553dc601c0e5502bcd71f1d948f