[INFO] fetching crate varlociraptor 4.11.4... [INFO] checking varlociraptor-4.11.4 against master#2ad4eb207b369017f5140918b5e4b0d3650b46b0 for pr-95611 [INFO] extracting crate varlociraptor 4.11.4 into /workspace/builds/worker-2/source [INFO] validating manifest of crates.io crate varlociraptor 4.11.4 on toolchain 2ad4eb207b369017f5140918b5e4b0d3650b46b0 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+2ad4eb207b369017f5140918b5e4b0d3650b46b0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate varlociraptor 4.11.4 [INFO] finished tweaking crates.io crate varlociraptor 4.11.4 [INFO] tweaked toml for crates.io crate varlociraptor 4.11.4 written to /workspace/builds/worker-2/source/Cargo.toml [INFO] crate crates.io crate varlociraptor 4.11.4 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+2ad4eb207b369017f5140918b5e4b0d3650b46b0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded askama_shared v0.11.2 [INFO] [stderr] Downloaded counter v0.5.3 [INFO] [stderr] Downloaded GSL-sys v3.0.0 [INFO] [stderr] Downloaded GSL v6.0.0 [INFO] [stderr] Downloaded sysinfo v0.15.9 [INFO] [stderr] Downloaded bio v0.39.2 [INFO] [stderr] Downloaded rulinalg v0.3.7 [INFO] [stderr] Downloaded rusty-machine v0.5.4 [INFO] [stderr] Downloaded derefable v0.1.0 [INFO] [stderr] Downloaded progress-logger v0.3.1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:eaef2f80f755933c374d2ae5edccceec0c1312ceb8a4e0b6404e8ab76561e1e5" "/opt/rustwide/cargo-home/bin/cargo" "+2ad4eb207b369017f5140918b5e4b0d3650b46b0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 8010464b754a2454e2592353d938871402802e6291455d6ac17bd0271d2bf908 [INFO] running `Command { std: "docker" "start" "-a" "8010464b754a2454e2592353d938871402802e6291455d6ac17bd0271d2bf908", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "8010464b754a2454e2592353d938871402802e6291455d6ac17bd0271d2bf908", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "8010464b754a2454e2592353d938871402802e6291455d6ac17bd0271d2bf908", kill_on_drop: false }` [INFO] [stdout] 8010464b754a2454e2592353d938871402802e6291455d6ac17bd0271d2bf908 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:eaef2f80f755933c374d2ae5edccceec0c1312ceb8a4e0b6404e8ab76561e1e5" "/opt/rustwide/cargo-home/bin/cargo" "+2ad4eb207b369017f5140918b5e4b0d3650b46b0" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 894573a72c5604078548d4e9df8870bfdbe97f9b097ec8afac09f854e065251a [INFO] running `Command { std: "docker" "start" "-a" "894573a72c5604078548d4e9df8870bfdbe97f9b097ec8afac09f854e065251a", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.119 [INFO] [stderr] Compiling proc-macro2 v1.0.36 [INFO] [stderr] Compiling unicode-xid v0.2.2 [INFO] [stderr] Compiling syn v1.0.86 [INFO] [stderr] Compiling autocfg v1.1.0 [INFO] [stderr] Checking cfg-if v1.0.0 [INFO] [stderr] Compiling version_check v0.9.4 [INFO] [stderr] Compiling serde_derive v1.0.136 [INFO] [stderr] Compiling libm v0.2.2 [INFO] [stderr] Compiling serde v1.0.136 [INFO] [stderr] Compiling memchr v2.3.4 [INFO] [stderr] Compiling pkg-config v0.3.24 [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Compiling fnv v1.0.7 [INFO] [stderr] Compiling ident_case v1.0.1 [INFO] [stderr] Checking once_cell v1.9.0 [INFO] [stderr] Compiling radium v0.5.3 [INFO] [stderr] Compiling strsim v0.10.0 [INFO] [stderr] 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v1.0.79 [INFO] [stderr] Checking unicode-width v0.1.9 [INFO] [stderr] Compiling async-trait v0.1.52 [INFO] [stderr] Compiling maplit v1.0.2 [INFO] [stderr] Compiling syn v0.15.44 [INFO] [stderr] Checking byteorder v1.4.3 [INFO] [stderr] Compiling anyhow v1.0.55 [INFO] [stderr] Compiling askama_escape v0.10.3 [INFO] [stderr] Checking regex-automata v0.1.10 [INFO] [stderr] Compiling humansize v1.1.1 [INFO] [stderr] Checking unicode-bidi v0.3.7 [INFO] [stderr] Checking itoa v1.0.1 [INFO] [stderr] Checking fixedbitset v0.4.1 [INFO] [stderr] Checking strsim v0.8.0 [INFO] [stderr] Checking ansi_term v0.12.1 [INFO] [stderr] Checking itoa v0.4.8 [INFO] [stderr] Compiling cached_proc_macro_types v0.1.0 [INFO] [stderr] Checking linked-hash-map v0.5.4 [INFO] [stderr] Checking bit-vec v0.6.3 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking yaml-rust v0.3.5 [INFO] [stderr] Checking ieee754 v0.2.6 [INFO] [stderr] Checking triple_accel v0.4.0 [INFO] [stderr] Checking strum v0.23.0 [INFO] [stderr] Checking bytecount v0.6.2 [INFO] [stderr] Checking linear-map v1.2.0 [INFO] [stderr] Checking remove_dir_all v0.5.3 [INFO] [stderr] Checking smallvec v1.8.0 [INFO] [stderr] Checking spin v0.5.2 [INFO] [stderr] Checking num_threads v0.1.3 [INFO] [stderr] Checking fastrand v1.7.0 [INFO] [stderr] Checking untrusted v0.7.1 [INFO] [stderr] Checking data-encoding v2.3.2 [INFO] [stderr] Checking auto_ops v0.3.0 [INFO] [stderr] Checking lru_time_cache v0.11.11 [INFO] [stderr] Checking humantime v2.1.0 [INFO] [stderr] Checking termcolor v1.1.2 [INFO] [stderr] Checking itertools v0.9.0 [INFO] [stderr] Checking itertools v0.10.3 [INFO] [stderr] Checking matrixmultiply v0.3.2 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling memoffset v0.6.5 [INFO] [stderr] Compiling num-iter v0.1.42 [INFO] [stderr] Compiling indexmap v1.8.0 [INFO] [stderr] Compiling num-rational v0.4.0 [INFO] [stderr] Compiling rayon v1.5.1 [INFO] [stderr] Compiling ahash v0.7.6 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.4 [INFO] [stderr] Compiling nom v6.2.1 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Compiling heck v0.3.3 [INFO] [stderr] Checking tinyvec v1.5.1 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Compiling GSL-sys v3.0.0 [INFO] [stderr] Checking form_urlencoded v1.0.1 [INFO] [stderr] Compiling pest v2.1.3 [INFO] [stderr] Checking textwrap v0.11.0 [INFO] [stderr] Checking async-mutex v1.4.0 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Checking fxhash v0.2.1 [INFO] [stderr] Compiling itertools v0.8.2 [INFO] [stderr] Checking yaml-rust v0.4.5 [INFO] [stderr] Checking bit-set v0.5.2 [INFO] [stderr] Checking async-rwlock v1.3.0 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Checking boolean_expression v0.4.4 [INFO] [stderr] Checking aho-corasick v0.7.15 [INFO] [stderr] Checking csv-core v0.1.10 [INFO] 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[stderr] Checking counter v0.5.3 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Checking rand v0.3.23 [INFO] [stderr] Compiling openssl-src v111.17.0+1.1.1m [INFO] [stderr] Compiling cmake v0.1.48 [INFO] [stderr] Checking GSL v6.0.0 [INFO] [stderr] Checking url v2.2.2 [INFO] [stderr] Checking rand v0.8.5 [INFO] [stderr] Checking lru v0.7.2 [INFO] [stderr] Checking simba v0.5.1 [INFO] [stderr] Checking ndarray v0.15.4 [INFO] [stderr] Checking num v0.1.42 [INFO] [stderr] Checking env_logger v0.9.0 [INFO] [stderr] Checking petgraph v0.6.0 [INFO] [stderr] Checking rulinalg v0.3.7 [INFO] [stderr] Checking rand_distr v0.4.3 [INFO] [stderr] Compiling openssl-sys v0.9.72 [INFO] [stderr] Compiling libz-sys v1.1.3 [INFO] [stderr] Compiling curl-sys v0.4.52+curl-7.81.0 [INFO] [stderr] Compiling bzip2-sys v0.1.11+1.0.8 [INFO] [stderr] Compiling lzma-sys v0.1.17 [INFO] [stderr] Compiling sysinfo v0.15.9 [INFO] [stderr] Compiling hts-sys v2.0.2 [INFO] [stderr] Compiling jemalloc-sys v0.3.2 [INFO] [stderr] Compiling ring v0.16.20 [INFO] [stderr] Checking rusty-machine v0.5.4 [INFO] [stderr] Compiling derefable v0.1.0 [INFO] [stderr] Checking progress-logger v0.3.1 [INFO] [stderr] Compiling darling_core v0.12.4 [INFO] [stderr] Compiling darling_core v0.13.1 [INFO] [stderr] Compiling pest_generator v2.1.3 [INFO] [stderr] Compiling thiserror-impl v1.0.30 [INFO] [stderr] Compiling futures-macro v0.3.21 [INFO] [stderr] Compiling strum_macros v0.23.1 [INFO] [stderr] Compiling nalgebra-macros v0.1.0 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Compiling enum-map-derive v0.6.0 [INFO] [stderr] Compiling structopt-derive v0.4.18 [INFO] [stderr] Compiling getset v0.1.2 [INFO] [stderr] Compiling shrinkwraprs v0.3.0 [INFO] [stderr] Compiling typed-builder v0.9.1 [INFO] [stderr] Compiling pest_derive v2.1.0 [INFO] [stderr] Compiling darling_macro v0.12.4 [INFO] [stderr] Compiling darling_macro v0.13.1 [INFO] [stderr] Checking nalgebra v0.27.1 [INFO] [stderr] Checking enum-map v1.1.1 [INFO] [stderr] Checking thiserror v1.0.30 [INFO] [stderr] Compiling darling v0.12.4 [INFO] [stderr] Compiling derive_builder_core v0.10.2 [INFO] [stderr] Compiling darling v0.13.1 [INFO] [stderr] Compiling cached_proc_macro v0.7.1 [INFO] [stderr] Compiling derive_builder_macro v0.10.2 [INFO] [stderr] Checking futures-executor v0.3.21 [INFO] [stderr] Checking futures v0.3.21 [INFO] [stderr] Checking cached v0.26.2 [INFO] [stderr] Checking derive_builder v0.10.2 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking bio-types v0.12.1 [INFO] [stderr] Checking bstr v0.2.15 [INFO] [stderr] Checking toml v0.5.8 [INFO] [stderr] Checking multimap v0.8.3 [INFO] [stderr] Checking ordered-float v1.1.1 [INFO] [stderr] Checking bincode v1.3.3 [INFO] [stderr] Checking half v1.8.2 [INFO] [stderr] Checking serde_yaml v0.8.23 [INFO] [stderr] Checking clap v2.34.0 [INFO] [stderr] Checking csv v1.1.6 [INFO] [stderr] Checking eval v0.4.3 [INFO] [stderr] Checking askama_shared v0.11.2 [INFO] [stderr] Checking structopt v0.3.26 [INFO] [stderr] Compiling askama_derive v0.10.5 [INFO] [stderr] Checking askama v0.10.5 [INFO] [stderr] Checking rust-htslib v0.38.2 [INFO] [stderr] Checking statrs v0.15.0 [INFO] [stderr] Checking bio v0.39.2 [INFO] [stderr] Checking jemallocator v0.3.2 [INFO] [stderr] Checking varlociraptor v4.11.4 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused variable: `stretch` [INFO] [stdout] --> src/utils/homopolymers.rs:137:23 [INFO] [stdout] | [INFO] [stdout] 137 | .filter(|(op, stretch)| match op { [INFO] [stdout] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_stretch` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `stretch` [INFO] [stdout] --> src/utils/homopolymers.rs:137:23 [INFO] [stdout] | [INFO] [stdout] 137 | .filter(|(op, stretch)| match op { [INFO] [stdout] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_stretch` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `chrom` [INFO] [stdout] --> src/utils/mod.rs:102:5 [INFO] [stdout] | [INFO] [stdout] 102 | chrom: Vec, [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] note: `GenomicLocus` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stdout] --> src/utils/mod.rs:99:37 [INFO] [stdout] | [INFO] [stdout] 99 | #[derive(new, Getters, CopyGetters, Debug)] [INFO] [stdout] | ^^^^^ [INFO] [stdout] = note: this warning originates in the derive macro `Debug` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `pos` [INFO] [stdout] --> src/utils/mod.rs:104:5 [INFO] [stdout] | [INFO] [stdout] 104 | pos: u32, [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] note: `GenomicLocus` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stdout] --> src/utils/mod.rs:99:37 [INFO] [stdout] | [INFO] [stdout] 99 | #[derive(new, Getters, CopyGetters, Debug)] [INFO] [stdout] | ^^^^^ [INFO] [stdout] = note: this warning originates in the derive macro `Debug` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `base` [INFO] [stdout] --> src/utils/homopolymers.rs:15:5 [INFO] [stdout] | [INFO] [stdout] 15 | base: u8, [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] note: `HomopolymerIndelOperation` has derived impls for the traits `Debug` and `Clone`, but these are intentionally ignored during dead code analysis [INFO] [stdout] --> src/utils/homopolymers.rs:10:10 [INFO] [stdout] | [INFO] [stdout] 10 | #[derive(Clone, Debug, CopyGetters)] [INFO] [stdout] | ^^^^^ ^^^^^ [INFO] [stdout] = note: this warning originates in the derive macro `Clone` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `omit_repeat_regions` [INFO] [stdout] --> src/variants/sample.rs:192:5 [INFO] [stdout] | [INFO] [stdout] 192 | omit_repeat_regions: Vec, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] note: `Sample` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stdout] --> src/variants/sample.rs:182:19 [INFO] [stdout] | [INFO] [stdout] 182 | #[derive(Builder, Debug)] [INFO] [stdout] | ^^^^^ [INFO] [stdout] = note: this warning originates in the derive macro `Debug` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `protocol_strandedness` [INFO] [stdout] --> src/variants/sample.rs:193:5 [INFO] [stdout] | [INFO] [stdout] 193 | protocol_strandedness: ProtocolStrandedness, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] note: `Sample` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stdout] --> src/variants/sample.rs:182:19 [INFO] [stdout] | [INFO] [stdout] 182 | #[derive(Builder, Debug)] [INFO] [stdout] | ^^^^^ [INFO] [stdout] = note: this warning originates in the derive macro `Debug` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `from_left` [INFO] [stdout] --> src/variants/types/mod.rs:374:5 [INFO] [stdout] | [INFO] [stdout] 374 | from_left: bool, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] note: `SingleLocus` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] --> src/variants/types/mod.rs:368:10 [INFO] [stdout] | [INFO] [stdout] 368 | #[derive(Debug, Derefable, Builder, new, Clone)] [INFO] [stdout] | ^^^^^ ^^^^^ [INFO] [stdout] = note: this warning originates in the derive macro `Debug` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `from_right` [INFO] [stdout] --> src/variants/types/mod.rs:377:5 [INFO] [stdout] | [INFO] [stdout] 377 | from_right: bool, [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] note: `SingleLocus` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] --> src/variants/types/mod.rs:368:10 [INFO] [stdout] | [INFO] [stdout] 368 | #[derive(Debug, Derefable, Builder, new, Clone)] [INFO] [stdout] | ^^^^^ ^^^^^ [INFO] [stdout] = note: this warning originates in the derive macro `Debug` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `observed_depth` [INFO] [stdout] --> src/variants/evidence/observations/depth_observation.rs:3:5 [INFO] [stdout] | [INFO] [stdout] 3 | observed_depth: u64, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] note: `DepthObservation` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] --> src/variants/evidence/observations/depth_observation.rs:1:10 [INFO] [stdout] | [INFO] [stdout] 1 | #[derive(Debug, new, Clone)] [INFO] [stdout] | ^^^^^ ^^^^^ [INFO] [stdout] = note: this warning originates in the derive macro `Debug` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `expected_ref_depth` [INFO] [stdout] --> src/variants/evidence/observations/depth_observation.rs:4:5 [INFO] [stdout] | [INFO] [stdout] 4 | expected_ref_depth: f64, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] note: `DepthObservation` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] --> src/variants/evidence/observations/depth_observation.rs:1:10 [INFO] [stdout] | [INFO] [stdout] 1 | #[derive(Debug, new, Clone)] [INFO] [stdout] | ^^^^^ ^^^^^ [INFO] [stdout] = note: this warning originates in the derive macro `Debug` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 10 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `chrom` [INFO] [stdout] --> src/utils/mod.rs:102:5 [INFO] [stdout] | [INFO] [stdout] 102 | chrom: Vec, [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] note: `GenomicLocus` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stdout] --> src/utils/mod.rs:99:37 [INFO] [stdout] | [INFO] [stdout] 99 | #[derive(new, Getters, CopyGetters, Debug)] [INFO] [stdout] | ^^^^^ [INFO] [stdout] = note: this warning originates in the derive macro `Debug` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `pos` [INFO] [stdout] --> src/utils/mod.rs:104:5 [INFO] [stdout] | [INFO] [stdout] 104 | pos: u32, [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] note: `GenomicLocus` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stdout] --> src/utils/mod.rs:99:37 [INFO] [stdout] | [INFO] [stdout] 99 | #[derive(new, Getters, CopyGetters, Debug)] [INFO] [stdout] | ^^^^^ [INFO] [stdout] = note: this warning originates in the derive macro `Debug` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `base` [INFO] [stdout] --> src/utils/homopolymers.rs:15:5 [INFO] [stdout] | [INFO] [stdout] 15 | base: u8, [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] note: `HomopolymerIndelOperation` has derived impls for the traits `Debug` and `Clone`, but these are intentionally ignored during dead code analysis [INFO] [stdout] --> src/utils/homopolymers.rs:10:10 [INFO] [stdout] | [INFO] [stdout] 10 | #[derive(Clone, Debug, CopyGetters)] [INFO] [stdout] | ^^^^^ ^^^^^ [INFO] [stdout] = note: this warning originates in the derive macro `Clone` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `omit_repeat_regions` [INFO] [stdout] --> src/variants/sample.rs:192:5 [INFO] [stdout] | [INFO] [stdout] 192 | omit_repeat_regions: Vec, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] note: `Sample` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stdout] --> src/variants/sample.rs:182:19 [INFO] [stdout] | [INFO] [stdout] 182 | #[derive(Builder, Debug)] [INFO] [stdout] | ^^^^^ [INFO] [stdout] = note: this warning originates in the derive macro `Debug` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `protocol_strandedness` [INFO] [stdout] --> src/variants/sample.rs:193:5 [INFO] [stdout] | [INFO] [stdout] 193 | protocol_strandedness: ProtocolStrandedness, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] note: `Sample` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stdout] --> src/variants/sample.rs:182:19 [INFO] [stdout] | [INFO] [stdout] 182 | #[derive(Builder, Debug)] [INFO] [stdout] | ^^^^^ [INFO] [stdout] = note: this warning originates in the derive macro `Debug` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `from_left` [INFO] [stdout] --> src/variants/types/mod.rs:374:5 [INFO] [stdout] | [INFO] [stdout] 374 | from_left: bool, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] note: `SingleLocus` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] --> src/variants/types/mod.rs:368:10 [INFO] [stdout] | [INFO] [stdout] 368 | #[derive(Debug, Derefable, Builder, new, Clone)] [INFO] [stdout] | ^^^^^ ^^^^^ [INFO] [stdout] = note: this warning originates in the derive macro `Debug` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `from_right` [INFO] [stdout] --> src/variants/types/mod.rs:377:5 [INFO] [stdout] | [INFO] [stdout] 377 | from_right: bool, [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] note: `SingleLocus` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] --> src/variants/types/mod.rs:368:10 [INFO] [stdout] | [INFO] [stdout] 368 | #[derive(Debug, Derefable, Builder, new, Clone)] [INFO] [stdout] | ^^^^^ ^^^^^ [INFO] [stdout] = note: this warning originates in the derive macro `Debug` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `observed_depth` [INFO] [stdout] --> src/variants/evidence/observations/depth_observation.rs:3:5 [INFO] [stdout] | [INFO] [stdout] 3 | observed_depth: u64, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] note: `DepthObservation` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] --> src/variants/evidence/observations/depth_observation.rs:1:10 [INFO] [stdout] | [INFO] [stdout] 1 | #[derive(Debug, new, Clone)] [INFO] [stdout] | ^^^^^ ^^^^^ [INFO] [stdout] = note: this warning originates in the derive macro `Debug` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `expected_ref_depth` [INFO] [stdout] --> src/variants/evidence/observations/depth_observation.rs:4:5 [INFO] [stdout] | [INFO] [stdout] 4 | expected_ref_depth: f64, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] note: `DepthObservation` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] --> src/variants/evidence/observations/depth_observation.rs:1:10 [INFO] [stdout] | [INFO] [stdout] 1 | #[derive(Debug, new, Clone)] [INFO] [stdout] | ^^^^^ ^^^^^ [INFO] [stdout] = note: this warning originates in the derive macro `Debug` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 10 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 8m 53s [INFO] running `Command { std: "docker" "inspect" "894573a72c5604078548d4e9df8870bfdbe97f9b097ec8afac09f854e065251a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "894573a72c5604078548d4e9df8870bfdbe97f9b097ec8afac09f854e065251a", kill_on_drop: false }` [INFO] [stdout] 894573a72c5604078548d4e9df8870bfdbe97f9b097ec8afac09f854e065251a