[INFO] cloning repository https://github.com/wtzhang23/bamgen
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/wtzhang23/bamgen" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fwtzhang23%2Fbamgen", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fwtzhang23%2Fbamgen'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 3d59832e20c0d9c88e0ea1a9b5a2cc5edb044927
[INFO] checking wtzhang23/bamgen against master#297a8018b525c28ef10ee6a91d61954839b508b9 for pr-95565
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fwtzhang23%2Fbamgen" "/workspace/builds/worker-10/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-10/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/wtzhang23/bamgen on toolchain 297a8018b525c28ef10ee6a91d61954839b508b9
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+297a8018b525c28ef10ee6a91d61954839b508b9" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/wtzhang23/bamgen
[INFO] finished tweaking git repo https://github.com/wtzhang23/bamgen
[INFO] tweaked toml for git repo https://github.com/wtzhang23/bamgen written to /workspace/builds/worker-10/source/Cargo.toml
[INFO] crate git repo https://github.com/wtzhang23/bamgen already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+297a8018b525c28ef10ee6a91d61954839b508b9" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded linear-map v1.2.0
[INFO] [stderr]   Downloaded ieee754 v0.2.6
[INFO] [stderr]   Downloaded openssl-sys v0.9.58
[INFO] [stderr]   Downloaded pkg-config v0.3.18
[INFO] [stderr]   Downloaded ron v0.6.2
[INFO] [stderr]   Downloaded tinyvec v0.3.4
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded serde_derive v1.0.116
[INFO] [stderr]   Downloaded cc v1.0.60
[INFO] [stderr]   Downloaded bio-types v0.7.0
[INFO] [stderr]   Downloaded unicode-normalization v0.1.13
[INFO] [stderr]   Downloaded lzma-sys v0.1.16
[INFO] [stderr]   Downloaded libc v0.2.79
[INFO] [stderr]   Downloaded bzip2-sys v0.1.9+1.0.8
[INFO] [stderr]   Downloaded hts-sys v1.10.3
[INFO] [stderr]   Downloaded rust-htslib v0.32.0
[INFO] [stderr]   Downloaded curl-sys v0.4.36+curl-7.71.1
[INFO] [stderr]   Downloaded openssl-src v111.11.0+1.1.1h
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:eaef2f80f755933c374d2ae5edccceec0c1312ceb8a4e0b6404e8ab76561e1e5" "/opt/rustwide/cargo-home/bin/cargo" "+297a8018b525c28ef10ee6a91d61954839b508b9" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 158d271e81de19f44df85330912d7cbf3610a925bcf27bf50bbab82de00ac24d
[INFO] running `Command { std: "docker" "start" "-a" "158d271e81de19f44df85330912d7cbf3610a925bcf27bf50bbab82de00ac24d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "158d271e81de19f44df85330912d7cbf3610a925bcf27bf50bbab82de00ac24d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "158d271e81de19f44df85330912d7cbf3610a925bcf27bf50bbab82de00ac24d", kill_on_drop: false }`
[INFO] [stdout] 158d271e81de19f44df85330912d7cbf3610a925bcf27bf50bbab82de00ac24d
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:eaef2f80f755933c374d2ae5edccceec0c1312ceb8a4e0b6404e8ab76561e1e5" "/opt/rustwide/cargo-home/bin/cargo" "+297a8018b525c28ef10ee6a91d61954839b508b9" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 29722679042ef61975fe4d7af24ece0fed78f959f699f689cb0909a8166e0ae2
[INFO] running `Command { std: "docker" "start" "-a" "29722679042ef61975fe4d7af24ece0fed78f959f699f689cb0909a8166e0ae2", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.79
[INFO] [stderr]    Compiling pkg-config v0.3.18
[INFO] [stderr]    Compiling proc-macro2 v1.0.24
[INFO] [stderr]    Compiling unicode-xid v0.2.1
[INFO] [stderr]    Compiling syn v1.0.42
[INFO] [stderr]    Compiling autocfg v1.0.1
[INFO] [stderr]    Compiling version_check v0.9.2
[INFO] [stderr]    Compiling memchr v2.3.3
[INFO] [stderr]    Compiling serde_derive v1.0.116
[INFO] [stderr]    Compiling serde v1.0.116
[INFO] [stderr]    Compiling getrandom v0.1.15
[INFO] [stderr]     Checking lazy_static v1.4.0
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling bitflags v1.2.1
[INFO] [stderr]     Checking cfg-if v0.1.10
[INFO] [stderr]    Compiling glob v0.3.0
[INFO] [stderr]     Checking tinyvec v0.3.4
[INFO] [stderr]     Checking matches v0.1.8
[INFO] [stderr]    Compiling unicode-segmentation v1.6.0
[INFO] [stderr]     Checking regex-syntax v0.6.18
[INFO] [stderr]     Checking ppv-lite86 v0.2.9
[INFO] [stderr]     Checking hashbrown v0.9.1
[INFO] [stderr]     Checking unicode-width v0.1.8
[INFO] [stderr]     Checking percent-encoding v2.1.0
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking termcolor v1.1.0
[INFO] [stderr]     Checking strsim v0.10.0
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking os_str_bytes v2.3.2
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]     Checking base64 v0.12.3
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]     Checking thread_local v1.0.1
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]     Checking unicode-normalization v0.1.13
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking unicode-bidi v0.3.4
[INFO] [stderr]    Compiling heck v0.3.1
[INFO] [stderr]     Checking textwrap v0.12.1
[INFO] [stderr]    Compiling indexmap v1.6.0
[INFO] [stderr]    Compiling quote v1.0.7
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]     Checking aho-corasick v0.7.13
[INFO] [stderr]    Compiling jobserver v0.1.21
[INFO] [stderr]     Checking idna v0.2.0
[INFO] [stderr]     Checking rand_core v0.5.1
[INFO] [stderr]    Compiling cc v1.0.60
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking rand_chacha v0.2.2
[INFO] [stderr]     Checking rand v0.7.3
[INFO] [stderr]     Checking regex v1.3.9
[INFO] [stderr]     Checking url v2.1.1
[INFO] [stderr]    Compiling openssl-src v111.11.0+1.1.1h
[INFO] [stderr]    Compiling thiserror-impl v1.0.20
[INFO] [stderr]    Compiling derive-new v0.5.8
[INFO] [stderr]    Compiling clap_derive v3.0.0-beta.2
[INFO] [stderr]    Compiling libz-sys v1.1.2
[INFO] [stderr]    Compiling curl-sys v0.4.36+curl-7.71.1
[INFO] [stderr]    Compiling bzip2-sys v0.1.9+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.16
[INFO] [stderr]    Compiling hts-sys v1.10.3
[INFO] [stderr]    Compiling openssl-sys v0.9.58
[INFO] [stderr]     Checking thiserror v1.0.20
[INFO] [stderr]     Checking clap v3.0.0-beta.2
[INFO] [stderr] error: could not compile `serde`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `rustc --crate-name serde /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/serde-1.0.116/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata -C embed-bitcode=no -C debuginfo=2 --cfg 'feature="default"' --cfg 'feature="derive"' --cfg 'feature="serde_derive"' --cfg 'feature="std"' -C metadata=1a546efb3636a18e -C extra-filename=-1a546efb3636a18e --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern serde_derive=/opt/rustwide/target/debug/deps/libserde_derive-6e5d87b404dacdb8.so --cap-lints allow --cap-lints=forbid --cfg ops_bound --cfg core_reverse --cfg de_boxed_c_str --cfg de_boxed_path --cfg de_rc_dst --cfg core_duration --cfg integer128 --cfg range_inclusive --cfg num_nonzero --cfg core_try_from --cfg num_nonzero_signed --cfg std_atomic64 --cfg std_atomic` (signal: 9, SIGKILL: kill)
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: could not compile `bzip2-sys`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `rustc --crate-name bzip2_sys /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/bzip2-sys-0.1.9+1.0.8/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata -C embed-bitcode=no -C debuginfo=2 -C metadata=c6d6d50a8d2a19cd -C extra-filename=-c6d6d50a8d2a19cd --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern libc=/opt/rustwide/target/debug/deps/liblibc-8de6155ce023d833.rmeta --cap-lints allow --cap-lints=forbid -L native=/opt/rustwide/target/debug/build/bzip2-sys-8f988c969abc925a/out/lib -l static=bz2` (signal: 9, SIGKILL: kill)
[INFO] [stderr] error: could not compile `lzma-sys`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `rustc --crate-name lzma_sys --edition=2018 /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/lzma-sys-0.1.16/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata -C embed-bitcode=no -C debuginfo=2 --cfg 'feature="static"' -C metadata=190acbe480f358d8 -C extra-filename=-190acbe480f358d8 --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern libc=/opt/rustwide/target/debug/deps/liblibc-8de6155ce023d833.rmeta --cap-lints allow --cap-lints=forbid -L native=/opt/rustwide/target/debug/build/lzma-sys-06bfec8c76c5759c/out -l static=lzma` (signal: 9, SIGKILL: kill)
[INFO] [stderr] error: could not compile `clap`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `rustc --crate-name clap --edition=2018 /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/clap-3.0.0-beta.2/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata -C embed-bitcode=no -C debuginfo=2 --cfg 'feature="atty"' --cfg 'feature="cargo"' --cfg 'feature="clap_derive"' --cfg 'feature="color"' --cfg 'feature="default"' --cfg 'feature="derive"' --cfg 'feature="lazy_static"' --cfg 'feature="std"' --cfg 'feature="strsim"' --cfg 'feature="suggestions"' --cfg 'feature="termcolor"' -C metadata=fa5ad9711d102686 -C extra-filename=-fa5ad9711d102686 --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern atty=/opt/rustwide/target/debug/deps/libatty-d1eb95bc51bea267.rmeta --extern bitflags=/opt/rustwide/target/debug/deps/libbitflags-c30f35abb0b74f97.rmeta --extern clap_derive=/opt/rustwide/target/debug/deps/libclap_derive-32f13c703fa5dd41.so --extern indexmap=/opt/rustwide/target/debug/deps/libindexmap-836717f284c01914.rmeta --extern lazy_static=/opt/rustwide/target/debug/deps/liblazy_static-3ab14ef94a1f89cf.rmeta --extern os_str_bytes=/opt/rustwide/target/debug/deps/libos_str_bytes-f04f982fd1e013e2.rmeta --extern strsim=/opt/rustwide/target/debug/deps/libstrsim-95324a042c633895.rmeta --extern termcolor=/opt/rustwide/target/debug/deps/libtermcolor-8e024d0631896275.rmeta --extern textwrap=/opt/rustwide/target/debug/deps/libtextwrap-b5e73ca419877ad3.rmeta --extern unicode_width=/opt/rustwide/target/debug/deps/libunicode_width-a6d10dc7269f5c3a.rmeta --extern vec_map=/opt/rustwide/target/debug/deps/libvec_map-304e25956ffa4d44.rmeta --cap-lints allow --cap-lints=forbid` (signal: 9, SIGKILL: kill)
[INFO] running `Command { std: "docker" "inspect" "29722679042ef61975fe4d7af24ece0fed78f959f699f689cb0909a8166e0ae2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "29722679042ef61975fe4d7af24ece0fed78f959f699f689cb0909a8166e0ae2", kill_on_drop: false }`
[INFO] [stdout] 29722679042ef61975fe4d7af24ece0fed78f959f699f689cb0909a8166e0ae2