[INFO] cloning repository https://github.com/bluenote-1577/chrom_mini_graph [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/bluenote-1577/chrom_mini_graph" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbluenote-1577%2Fchrom_mini_graph", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbluenote-1577%2Fchrom_mini_graph'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 378f4011df22059705e498dc75fcb7d4335234ae [INFO] checking bluenote-1577/chrom_mini_graph against try#42d1facfffa1a5357d6d62815f7be91f8ad69ed8 for pr-95474 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbluenote-1577%2Fchrom_mini_graph" "/workspace/builds/worker-2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-2/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/bluenote-1577/chrom_mini_graph on toolchain 42d1facfffa1a5357d6d62815f7be91f8ad69ed8 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+42d1facfffa1a5357d6d62815f7be91f8ad69ed8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/bluenote-1577/chrom_mini_graph [INFO] finished tweaking git repo https://github.com/bluenote-1577/chrom_mini_graph [INFO] tweaked toml for git repo https://github.com/bluenote-1577/chrom_mini_graph written to /workspace/builds/worker-2/source/Cargo.toml [INFO] crate git repo https://github.com/bluenote-1577/chrom_mini_graph already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+42d1facfffa1a5357d6d62815f7be91f8ad69ed8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:eaef2f80f755933c374d2ae5edccceec0c1312ceb8a4e0b6404e8ab76561e1e5" "/opt/rustwide/cargo-home/bin/cargo" "+42d1facfffa1a5357d6d62815f7be91f8ad69ed8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 1c86c0764494351b978fc51f065f0cfb818ef07bfdbbc605c89eed8bf8a93204 [INFO] running `Command { std: "docker" "start" "-a" "1c86c0764494351b978fc51f065f0cfb818ef07bfdbbc605c89eed8bf8a93204", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "1c86c0764494351b978fc51f065f0cfb818ef07bfdbbc605c89eed8bf8a93204", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "1c86c0764494351b978fc51f065f0cfb818ef07bfdbbc605c89eed8bf8a93204", kill_on_drop: false }` [INFO] [stdout] 1c86c0764494351b978fc51f065f0cfb818ef07bfdbbc605c89eed8bf8a93204 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:eaef2f80f755933c374d2ae5edccceec0c1312ceb8a4e0b6404e8ab76561e1e5" "/opt/rustwide/cargo-home/bin/cargo" "+42d1facfffa1a5357d6d62815f7be91f8ad69ed8" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 468f4b67899a79517cf73fae64f3f221ce1c111cedd0781c9f705a7147d4b73b [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "468f4b67899a79517cf73fae64f3f221ce1c111cedd0781c9f705a7147d4b73b", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.102 [INFO] [stderr] Compiling autocfg v1.0.1 [INFO] [stderr] Compiling proc-macro2 v1.0.29 [INFO] [stderr] Compiling unicode-xid v0.2.2 [INFO] [stderr] Compiling syn v1.0.76 [INFO] [stderr] Compiling serde_derive v1.0.130 [INFO] [stderr] Compiling serde v1.0.130 [INFO] [stderr] Checking cfg-if v1.0.0 [INFO] [stderr] Compiling libm v0.2.1 [INFO] [stderr] Compiling memchr v2.4.1 [INFO] [stderr] Checking ppv-lite86 v0.2.10 [INFO] [stderr] Compiling pkg-config v0.3.22 [INFO] [stderr] Compiling version_check v0.9.3 [INFO] [stderr] Compiling log v0.4.14 [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Compiling ryu v1.0.5 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling unicode-segmentation v1.8.0 [INFO] [stderr] Compiling unicode-width v0.1.9 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Compiling rand_core v0.6.3 [INFO] [stderr] Compiling dirs v3.0.2 [INFO] [stderr] Checking regex v1.5.4 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking probability v0.17.0 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Checking wyhash v0.5.0 [INFO] [stderr] Checking idna v0.2.3 [INFO] [stderr] Checking approx v0.4.0 [INFO] [stderr] Checking approx v0.5.0 [INFO] [stderr] Checking num-complex v0.3.1 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking ordered-float v1.1.1 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Checking rand v0.8.4 [INFO] [stderr] Compiling cmake v0.1.46 [INFO] [stderr] Compiling openssl-src v300.0.2+3.0.0 [INFO] [stderr] Checking url v2.2.2 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Checking rand_distr v0.4.2 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Compiling libloading v0.5.2 [INFO] [stderr] Compiling openssl-sys v0.9.70 [INFO] [stderr] Compiling libz-sys v1.1.3 [INFO] [stderr] Compiling curl-sys v0.4.50+curl-7.79.1 [INFO] [stderr] Compiling lzma-sys v0.1.17 [INFO] [stderr] Compiling bzip2-sys v0.1.11+1.0.8 [INFO] [stderr] Compiling hts-sys v2.0.2 [INFO] [stderr] Compiling env_logger v0.7.1 [INFO] [stderr] Compiling tempfile v3.2.0 [INFO] [stderr] Checking rand_distr v0.3.0 [INFO] [stderr] Checking num v0.3.1 [INFO] [stderr] Compiling thiserror-impl v1.0.29 [INFO] [stderr] Compiling nalgebra-macros v0.1.0 [INFO] [stderr] Compiling strum_macros v0.20.1 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Compiling enum-map-derive v0.6.0 [INFO] [stderr] Compiling getset v0.1.1 [INFO] [stderr] Compiling strum_macros v0.21.1 [INFO] [stderr] Checking enum-map v1.1.1 [INFO] [stderr] Compiling thiserror v1.0.29 [INFO] [stderr] Compiling openblas-build v0.1.1 [INFO] [stderr] Checking bio-types v0.12.0 [INFO] [stderr] Compiling openblas-src v0.10.4 [INFO] [stderr] Checking num-complex v0.4.0 [INFO] [stderr] Checking bstr v0.2.17 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking boomphf v0.5.9 [INFO] [stderr] Checking smallvec v1.6.1 [INFO] [stderr] Checking multimap v0.8.3 [INFO] [stderr] Checking smartcore v0.2.0 [INFO] [stderr] Checking bincode v1.3.3 [INFO] [stderr] Checking clap v2.33.3 [INFO] [stderr] Compiling toml v0.5.8 [INFO] [stderr] Checking cauchy v0.4.0 [INFO] [stderr] Checking ndarray v0.15.3 [INFO] [stderr] Checking lapack v0.18.0 [INFO] [stderr] Checking simba v0.5.1 [INFO] [stderr] Checking csv v1.1.6 [INFO] [stderr] Checking debruijn v0.3.4 [INFO] [stderr] Checking lax v0.2.0 [INFO] [stderr] Checking ndarray-linalg v0.14.1 [INFO] [stderr] Checking linfa-elasticnet v0.5.0 [INFO] [stderr] Checking nalgebra v0.27.1 [INFO] [stderr] Compiling libwfa v0.1.2 [INFO] [stderr] Compiling block-aligner v0.2.0 [INFO] [stderr] Checking rust-htslib v0.38.2 [INFO] [stderr] Checking statrs v0.15.0 [INFO] [stderr] Checking chrom_mini_graph v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `debruijn::kmer::Kmer12` [INFO] [stdout] --> src/seeding_methods_bit.rs:4:5 [INFO] [stdout] | [INFO] [stdout] 4 | use debruijn::kmer::Kmer12; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `debruijn::kmer::Kmer8` [INFO] [stdout] --> src/seeding_methods_bit.rs:6:5 [INFO] [stdout] | [INFO] [stdout] 6 | use debruijn::kmer::Kmer8; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `debruijn::Kmer` [INFO] [stdout] --> src/chain.rs:6:5 [INFO] [stdout] | [INFO] [stdout] 6 | use debruijn::Kmer; [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary parentheses around `if` condition [INFO] [stdout] --> src/chain.rs:1125:12 [INFO] [stdout] | [INFO] [stdout] 1125 | if (i > 0 && !chain_reads){ [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_parens)]` on by default [INFO] [stdout] help: remove these parentheses [INFO] [stdout] | [INFO] [stdout] 1125 - if (i > 0 && !chain_reads){ [INFO] [stdout] 1125 + if i > 0 && !chain_reads { [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `debruijn::dna_string::*` [INFO] [stdout] --> src/align.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use debruijn::dna_string::*; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `ElasticNet`, `Result` [INFO] [stdout] --> src/deconvolution.rs:5:24 [INFO] [stdout] | [INFO] [stdout] 5 | use linfa_elasticnet::{ElasticNet, Result}; [INFO] [stdout] | ^^^^^^^^^^ ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `ElasticNetError` [INFO] [stdout] --> src/deconvolution.rs:6:24 [INFO] [stdout] | [INFO] [stdout] 6 | use linfa_elasticnet::{ElasticNetError, ElasticNetParams}; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `array` [INFO] [stdout] --> src/deconvolution.rs:7:15 [INFO] [stdout] | [INFO] [stdout] 7 | use ndarray::{array, s, Array, Array2}; [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `debruijn::kmer::Kmer12` [INFO] [stdout] --> src/seeding_methods_bit.rs:4:5 [INFO] [stdout] | [INFO] [stdout] 4 | use debruijn::kmer::Kmer12; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `debruijn::kmer::Kmer8` [INFO] [stdout] --> src/seeding_methods_bit.rs:6:5 [INFO] [stdout] | [INFO] [stdout] 6 | use debruijn::kmer::Kmer8; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `debruijn::Kmer` [INFO] [stdout] --> src/chain.rs:6:5 [INFO] [stdout] | [INFO] [stdout] 6 | use debruijn::Kmer; [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary parentheses around `if` condition [INFO] [stdout] --> src/chain.rs:1125:12 [INFO] [stdout] | [INFO] [stdout] 1125 | if (i > 0 && !chain_reads){ [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_parens)]` on by default [INFO] [stdout] help: remove these parentheses [INFO] [stdout] | [INFO] [stdout] 1125 - if (i > 0 && !chain_reads){ [INFO] [stdout] 1125 + if i > 0 && !chain_reads { [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `debruijn::dna_string::*` [INFO] [stdout] --> src/align.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use debruijn::dna_string::*; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `ElasticNet`, `Result` [INFO] [stdout] --> src/deconvolution.rs:5:24 [INFO] [stdout] | [INFO] [stdout] 5 | use linfa_elasticnet::{ElasticNet, Result}; [INFO] [stdout] | ^^^^^^^^^^ ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `ElasticNetError` [INFO] [stdout] --> src/deconvolution.rs:6:24 [INFO] [stdout] | [INFO] [stdout] 6 | use linfa_elasticnet::{ElasticNetError, ElasticNetParams}; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `array` [INFO] [stdout] --> src/deconvolution.rs:7:15 [INFO] [stdout] | [INFO] [stdout] 7 | use ndarray::{array, s, Array, Array2}; [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unreachable statement [INFO] [stdout] --> src/align.rs:578:21 [INFO] [stdout] | [INFO] [stdout] 577 | panic!("{}\n{}", prev_char, cg_str); [INFO] [stdout] | ----------------------------------- any code following this expression is unreachable [INFO] [stdout] 578 | op = Operation::Sentinel; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^ unreachable statement [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unreachable_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unreachable statement [INFO] [stdout] --> src/align.rs:602:13 [INFO] [stdout] | [INFO] [stdout] 601 | panic!("{}\n{}", prev_char, cg_str); [INFO] [stdout] | ----------------------------------- any code following this expression is unreachable [INFO] [stdout] 602 | op = Operation::Sentinel; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^ unreachable statement [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unreachable statement [INFO] [stdout] --> src/align.rs:578:21 [INFO] [stdout] | [INFO] [stdout] 577 | panic!("{}\n{}", prev_char, cg_str); [INFO] [stdout] | ----------------------------------- any code following this expression is unreachable [INFO] [stdout] 578 | op = Operation::Sentinel; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^ unreachable statement [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unreachable_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unreachable statement [INFO] [stdout] --> src/align.rs:602:13 [INFO] [stdout] | [INFO] [stdout] 601 | panic!("{}\n{}", prev_char, cg_str); [INFO] [stdout] | ----------------------------------- any code following this expression is unreachable [INFO] [stdout] 602 | op = Operation::Sentinel; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^ unreachable statement [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `num_contains_dist_not` is assigned to, but never used [INFO] [stdout] --> src/graph_utils.rs:219:13 [INFO] [stdout] | [INFO] [stdout] 219 | let mut num_contains_dist_not = 0; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] = note: consider using `_num_contains_dist_not` instead [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `circular` [INFO] [stdout] --> src/graph_utils.rs:194:5 [INFO] [stdout] | [INFO] [stdout] 194 | circular: bool [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_circular` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `q_len` [INFO] [stdout] --> src/chain.rs:275:9 [INFO] [stdout] | [INFO] [stdout] 275 | let q_len = seeds_q.len(); [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_q_len` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `now` [INFO] [stdout] --> src/chain.rs:276:9 [INFO] [stdout] | [INFO] [stdout] 276 | let now = Instant::now(); [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_now` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `count` is assigned to, but never used [INFO] [stdout] --> src/chain.rs:288:21 [INFO] [stdout] | [INFO] [stdout] 288 | let mut count = 0; [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: consider using `_count` instead [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `qlen` [INFO] [stdout] --> src/chain.rs:455:5 [INFO] [stdout] | [INFO] [stdout] 455 | qlen: u32, [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_qlen` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `mandatory_color` [INFO] [stdout] --> src/chain.rs:967:9 [INFO] [stdout] | [INFO] [stdout] 967 | let mandatory_color = Color::MAX; [INFO] [stdout] | ^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_mandatory_color` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `r_node` [INFO] [stdout] --> src/align.rs:405:13 [INFO] [stdout] | [INFO] [stdout] 405 | let r_node = &ref_graph[anchors[i].0 as usize]; [INFO] [stdout] | ^^^^^^ help: if this is intentional, prefix it with an underscore: `_r_node` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: value assigned to `prev_char` is never read [INFO] [stdout] --> src/align.rs:586:17 [INFO] [stdout] | [INFO] [stdout] 586 | prev_char = c; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_assignments)]` on by default [INFO] [stdout] = help: maybe it is overwritten before being read? [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `now` [INFO] [stdout] --> src/deconvolution.rs:95:9 [INFO] [stdout] | [INFO] [stdout] 95 | let now = Instant::now(); [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_now` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `read` [INFO] [stdout] --> src/deconvolution.rs:93:5 [INFO] [stdout] | [INFO] [stdout] 93 | read: &String, [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_read` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `num_edges` [INFO] [stdout] --> src/deconvolution.rs:232:21 [INFO] [stdout] | [INFO] [stdout] 232 | let num_edges = str_vec.len() * (str_vec.len() - 1) / 2; [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_num_edges` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `num_contains_dist_not` is assigned to, but never used [INFO] [stdout] --> src/graph_utils.rs:219:13 [INFO] [stdout] | [INFO] [stdout] 219 | let mut num_contains_dist_not = 0; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] = note: consider using `_num_contains_dist_not` instead [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `circular` [INFO] [stdout] --> src/graph_utils.rs:194:5 [INFO] [stdout] | [INFO] [stdout] 194 | circular: bool [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_circular` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `q_len` [INFO] [stdout] --> src/chain.rs:275:9 [INFO] [stdout] | [INFO] [stdout] 275 | let q_len = seeds_q.len(); [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_q_len` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `now` [INFO] [stdout] --> src/chain.rs:276:9 [INFO] [stdout] | [INFO] [stdout] 276 | let now = Instant::now(); [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_now` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `count` is assigned to, but never used [INFO] [stdout] --> src/chain.rs:288:21 [INFO] [stdout] | [INFO] [stdout] 288 | let mut count = 0; [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: consider using `_count` instead [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `qlen` [INFO] [stdout] --> src/chain.rs:455:5 [INFO] [stdout] | [INFO] [stdout] 455 | qlen: u32, [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_qlen` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `mandatory_color` [INFO] [stdout] --> src/chain.rs:967:9 [INFO] [stdout] | [INFO] [stdout] 967 | let mandatory_color = Color::MAX; [INFO] [stdout] | ^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_mandatory_color` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `r_node` [INFO] [stdout] --> src/align.rs:405:13 [INFO] [stdout] | [INFO] [stdout] 405 | let r_node = &ref_graph[anchors[i].0 as usize]; [INFO] [stdout] | ^^^^^^ help: if this is intentional, prefix it with an underscore: `_r_node` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: value assigned to `prev_char` is never read [INFO] [stdout] --> src/align.rs:586:17 [INFO] [stdout] | [INFO] [stdout] 586 | prev_char = c; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_assignments)]` on by default [INFO] [stdout] = help: maybe it is overwritten before being read? [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `now` [INFO] [stdout] --> src/deconvolution.rs:95:9 [INFO] [stdout] | [INFO] [stdout] 95 | let now = Instant::now(); [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_now` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `read` [INFO] [stdout] --> src/deconvolution.rs:93:5 [INFO] [stdout] | [INFO] [stdout] 93 | read: &String, [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_read` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `num_edges` [INFO] [stdout] --> src/deconvolution.rs:232:21 [INFO] [stdout] | [INFO] [stdout] 232 | let num_edges = str_vec.len() * (str_vec.len() - 1) / 2; [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_num_edges` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/graph_utils.rs:191:5 [INFO] [stdout] | [INFO] [stdout] 191 | mut anchors: Vec<(u32, u32)>, [INFO] [stdout] | ----^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/graph_utils.rs:191:5 [INFO] [stdout] | [INFO] [stdout] 191 | mut anchors: Vec<(u32, u32)>, [INFO] [stdout] | ----^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/deconvolution.rs:233:21 [INFO] [stdout] | [INFO] [stdout] 233 | let mut prod_term; [INFO] [stdout] | ----^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/deconvolution.rs:233:21 [INFO] [stdout] | [INFO] [stdout] 233 | let mut prod_term; [INFO] [stdout] | ----^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `score` [INFO] [stdout] --> src/chain.rs:67:4 [INFO] [stdout] | [INFO] [stdout] 67 | fn score(ref_order_dist: f64, query_order_dist: f64) -> f64 { [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `beta` [INFO] [stdout] --> src/chain.rs:106:4 [INFO] [stdout] | [INFO] [stdout] 106 | fn beta(ref_order_dist: f64, query_order_dist: f64) -> f64 { [INFO] [stdout] | ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 26 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `score` [INFO] [stdout] --> src/chain.rs:67:4 [INFO] [stdout] | [INFO] [stdout] 67 | fn score(ref_order_dist: f64, query_order_dist: f64) -> f64 { [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `beta` [INFO] [stdout] --> src/chain.rs:106:4 [INFO] [stdout] | [INFO] [stdout] 106 | fn beta(ref_order_dist: f64, query_order_dist: f64) -> f64 { [INFO] [stdout] | ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 26 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `block_aligner::scan_block::*` [INFO] [stdout] --> src/bin/chrom_mini_graph.rs:3:5 [INFO] [stdout] | [INFO] [stdout] 3 | use block_aligner::scan_block::*; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::mem` [INFO] [stdout] --> src/bin/chrom_mini_graph.rs:20:5 [INFO] [stdout] | [INFO] [stdout] 20 | use std::mem; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `block_aligner::scan_block::*` [INFO] [stdout] --> src/bin/chrom_mini_graph.rs:3:5 [INFO] [stdout] | [INFO] [stdout] 3 | use block_aligner::scan_block::*; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::mem` [INFO] [stdout] --> src/bin/chrom_mini_graph.rs:20:5 [INFO] [stdout] | [INFO] [stdout] 20 | use std::mem; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `block_aligner::scores` [INFO] [stdout] --> src/bin/chrom_mini_graph.rs:4:5 [INFO] [stdout] | [INFO] [stdout] 4 | use block_aligner::scores::*; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `debruijn::Mer` [INFO] [stdout] --> src/bin/chrom_mini_graph.rs:15:5 [INFO] [stdout] | [INFO] [stdout] 15 | use debruijn::Mer; [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `mask_repet_on_generate` [INFO] [stdout] --> src/bin/chrom_mini_graph.rs:166:9 [INFO] [stdout] | [INFO] [stdout] 166 | let mask_repet_on_generate = true; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_mask_repet_on_generate` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `block_aligner::scores` [INFO] [stdout] --> src/bin/chrom_mini_graph.rs:4:5 [INFO] [stdout] | [INFO] [stdout] 4 | use block_aligner::scores::*; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `debruijn::Mer` [INFO] [stdout] --> src/bin/chrom_mini_graph.rs:15:5 [INFO] [stdout] | [INFO] [stdout] 15 | use debruijn::Mer; [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `mask_repet_on_generate` [INFO] [stdout] --> src/bin/chrom_mini_graph.rs:166:9 [INFO] [stdout] | [INFO] [stdout] 166 | let mask_repet_on_generate = true; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_mask_repet_on_generate` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 5 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 5 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [optimized + debuginfo] target(s) in 10m 30s [INFO] running `Command { std: "docker" "inspect" "468f4b67899a79517cf73fae64f3f221ce1c111cedd0781c9f705a7147d4b73b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "468f4b67899a79517cf73fae64f3f221ce1c111cedd0781c9f705a7147d4b73b", kill_on_drop: false }` [INFO] [stdout] 468f4b67899a79517cf73fae64f3f221ce1c111cedd0781c9f705a7147d4b73b