[INFO] fetching crate ncbitaxonomy 1.0.7... [INFO] building ncbitaxonomy-1.0.7 against master#461e8078010433ff7de2db2aaae8a3cfb0847215 for pr-94962 [INFO] extracting crate ncbitaxonomy 1.0.7 into /workspace/builds/worker-12/source [INFO] validating manifest of crates.io crate ncbitaxonomy 1.0.7 on toolchain 461e8078010433ff7de2db2aaae8a3cfb0847215 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+461e8078010433ff7de2db2aaae8a3cfb0847215" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate ncbitaxonomy 1.0.7 [INFO] finished tweaking crates.io crate ncbitaxonomy 1.0.7 [INFO] tweaked toml for crates.io crate ncbitaxonomy 1.0.7 written to /workspace/builds/worker-12/source/Cargo.toml [INFO] crate crates.io crate ncbitaxonomy 1.0.7 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+461e8078010433ff7de2db2aaae8a3cfb0847215" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded dotenv v0.9.0 [INFO] [stderr] Downloaded bio-types v0.6.0 [INFO] [stderr] Downloaded textwrap v0.10.0 [INFO] [stderr] Downloaded bit-vec v0.6.2 [INFO] [stderr] Downloaded serde_derive v1.0.112 [INFO] [stderr] Downloaded bio v0.25.0 [INFO] [stderr] Downloaded indextree v3.3.0 [INFO] [stderr] Downloaded bv v0.10.0 [INFO] [stderr] Downloaded clap v2.32.0 [INFO] [stderr] Downloaded statrs v0.9.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:1ede1414886370302e694df474b9877c02906499f04c196936ce0973d30c5eaa" "/opt/rustwide/cargo-home/bin/cargo" "+461e8078010433ff7de2db2aaae8a3cfb0847215" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 5ec3152f57600e65b79d1254c772e3ce01327bd2948dfb138a5f0ebbb86360bd [INFO] running `Command { std: "docker" "start" "-a" "5ec3152f57600e65b79d1254c772e3ce01327bd2948dfb138a5f0ebbb86360bd", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "5ec3152f57600e65b79d1254c772e3ce01327bd2948dfb138a5f0ebbb86360bd", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "5ec3152f57600e65b79d1254c772e3ce01327bd2948dfb138a5f0ebbb86360bd", kill_on_drop: false }` [INFO] [stdout] 5ec3152f57600e65b79d1254c772e3ce01327bd2948dfb138a5f0ebbb86360bd [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:1ede1414886370302e694df474b9877c02906499f04c196936ce0973d30c5eaa" "/opt/rustwide/cargo-home/bin/cargo" "+461e8078010433ff7de2db2aaae8a3cfb0847215" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 67dc64da62e2753dae2b0fe1cbbb7630403f84da3b3673e378d71ce5be658004 [INFO] running `Command { std: "docker" "start" "-a" "67dc64da62e2753dae2b0fe1cbbb7630403f84da3b3673e378d71ce5be658004", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.18 [INFO] [stderr] Compiling unicode-xid v0.2.0 [INFO] [stderr] Compiling syn v1.0.31 [INFO] [stderr] Compiling libc v0.2.71 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling autocfg v1.0.0 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling byteorder v1.3.4 [INFO] [stderr] Compiling serde v1.0.112 [INFO] [stderr] Compiling semver-parser v0.7.0 [INFO] [stderr] Compiling scopeguard v0.3.3 [INFO] [stderr] Compiling maybe-uninit v2.0.0 [INFO] [stderr] Compiling arrayvec v0.4.12 [INFO] [stderr] Compiling pkg-config v0.3.17 [INFO] [stderr] Compiling nodrop v0.1.14 [INFO] [stderr] Compiling rand_core v0.4.2 [INFO] [stderr] Compiling stable_deref_trait v1.1.1 [INFO] [stderr] Compiling memoffset v0.2.1 [INFO] [stderr] Compiling adler32 v1.1.0 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling crossbeam-utils v0.5.0 [INFO] [stderr] Compiling matrixmultiply v0.1.15 [INFO] [stderr] Compiling gimli v0.21.0 [INFO] [stderr] Compiling ryu v1.0.5 [INFO] [stderr] Compiling failure_derive v0.1.8 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling rawpointer v0.1.0 [INFO] [stderr] Compiling object v0.20.0 [INFO] [stderr] Compiling crc32fast v1.2.0 [INFO] [stderr] Compiling regex v0.2.11 [INFO] [stderr] Compiling regex-syntax v0.6.18 [INFO] [stderr] Compiling ucd-util v0.1.8 [INFO] [stderr] Compiling rustc-demangle v0.1.16 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling either v1.5.3 [INFO] [stderr] Compiling ndarray v0.12.1 [INFO] [stderr] Compiling bio v0.25.0 [INFO] [stderr] Compiling safemem v0.2.0 [INFO] [stderr] Compiling unicode-width v0.1.7 [INFO] [stderr] Compiling itoa v0.4.6 [INFO] [stderr] Compiling utf8-ranges v1.0.4 [INFO] [stderr] Compiling bit-vec v0.6.2 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling scoped_threadpool v0.1.9 [INFO] [stderr] Compiling fnv v1.0.7 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling strsim v0.7.0 [INFO] [stderr] Compiling bytecount v0.3.2 [INFO] [stderr] Compiling owning_ref v0.4.1 [INFO] [stderr] Compiling crossbeam-utils v0.6.6 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Compiling thread_local v0.3.6 [INFO] [stderr] Compiling textwrap v0.10.0 [INFO] [stderr] Compiling rand_core v0.3.1 [INFO] [stderr] Compiling lock_api v0.1.5 [INFO] [stderr] Compiling regex-syntax v0.5.6 [INFO] [stderr] Compiling itertools v0.7.11 [INFO] [stderr] Compiling semver v0.9.0 [INFO] [stderr] Compiling bit-set v0.5.2 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling bv v0.10.0 [INFO] [stderr] Compiling miniz_oxide v0.3.7 [INFO] [stderr] Compiling libsqlite3-sys v0.18.0 [INFO] [stderr] Compiling num-traits v0.2.12 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling aho-corasick v0.7.10 [INFO] [stderr] Compiling num-integer v0.1.43 [INFO] [stderr] Compiling csv-core v0.1.10 [INFO] [stderr] Compiling aho-corasick v0.6.10 [INFO] [stderr] Compiling smallvec v0.6.13 [INFO] [stderr] Compiling rustc_version v0.2.3 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling crossbeam-epoch v0.5.2 [INFO] [stderr] Compiling crossbeam-epoch v0.6.1 [INFO] [stderr] Compiling regex-automata v0.1.9 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling parking_lot_core v0.3.1 [INFO] [stderr] Compiling rand v0.5.6 [INFO] [stderr] Compiling rand v0.4.6 [INFO] [stderr] Compiling slice-deque v0.1.16 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling flate2 v1.0.14 [INFO] [stderr] Compiling quote v1.0.7 [INFO] [stderr] Compiling crossbeam-deque v0.5.2 [INFO] [stderr] Compiling buf_redux v0.7.1 [INFO] [stderr] Compiling rand v0.3.23 [INFO] [stderr] Compiling statrs v0.9.0 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling approx v0.3.2 [INFO] [stderr] Compiling ordered-float v1.0.2 [INFO] [stderr] Compiling parking_lot v0.6.4 [INFO] [stderr] Compiling regex v1.3.9 [INFO] [stderr] Compiling crossbeam-channel v0.2.6 [INFO] [stderr] Compiling addr2line v0.12.1 [INFO] [stderr] Compiling dotenv v0.9.0 [INFO] [stderr] Compiling backtrace v0.3.49 [INFO] [stderr] Compiling crossbeam v0.4.1 [INFO] [stderr] Compiling synstructure v0.12.4 [INFO] [stderr] Compiling serde_derive v1.0.112 [INFO] [stderr] Compiling diesel_derives v1.4.1 [INFO] [stderr] Compiling derive-new v0.5.8 [INFO] [stderr] Compiling thiserror-impl v1.0.20 [INFO] [stderr] Compiling failure v0.1.8 [INFO] [stderr] Compiling indextree v3.3.0 [INFO] [stderr] Compiling thiserror v1.0.20 [INFO] [stderr] Compiling diesel v1.4.5 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling bstr v0.2.13 [INFO] [stderr] Compiling multimap v0.4.0 [INFO] [stderr] Compiling bio-types v0.6.0 [INFO] [stderr] Compiling seq_io v0.3.0 [INFO] [stderr] Compiling clap v2.32.0 [INFO] [stderr] Compiling csv v1.1.3 [INFO] [stderr] Compiling migrations_internals v1.4.1 [INFO] [stderr] Compiling migrations_macros v1.4.2 [INFO] [stderr] Compiling diesel_migrations v1.4.0 [INFO] [stderr] Compiling ncbitaxonomy v1.0.7 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 36.70s [INFO] running `Command { std: "docker" "inspect" "67dc64da62e2753dae2b0fe1cbbb7630403f84da3b3673e378d71ce5be658004", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "67dc64da62e2753dae2b0fe1cbbb7630403f84da3b3673e378d71ce5be658004", kill_on_drop: false }` [INFO] [stdout] 67dc64da62e2753dae2b0fe1cbbb7630403f84da3b3673e378d71ce5be658004 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:1ede1414886370302e694df474b9877c02906499f04c196936ce0973d30c5eaa" "/opt/rustwide/cargo-home/bin/cargo" "+461e8078010433ff7de2db2aaae8a3cfb0847215" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 4bc6f5134add58419b8616a13d3ba5ef5b9c4c70b06bb3b2e6e5afbcc2e6a594 [INFO] running `Command { std: "docker" "start" "-a" "4bc6f5134add58419b8616a13d3ba5ef5b9c4c70b06bb3b2e6e5afbcc2e6a594", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling ncbitaxonomy v1.0.7 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 6.48s [INFO] [stderr] Executable unittests src/lib.rs (/opt/rustwide/target/debug/deps/ncbitaxonomy-33bb6f74ebbe5f9a) [INFO] [stderr] Executable unittests src/bin/taxonomy_filter_fastq.rs (/opt/rustwide/target/debug/deps/taxonomy_filter_fastq-93ace050f2c56022) [INFO] [stderr] Executable unittests src/bin/taxonomy_filter_refseq.rs (/opt/rustwide/target/debug/deps/taxonomy_filter_refseq-a56c564ae8261480) [INFO] [stderr] Executable unittests src/bin/taxonomy_util.rs (/opt/rustwide/target/debug/deps/taxonomy_util-e9202a1f2729295a) [INFO] running `Command { std: "docker" "inspect" "4bc6f5134add58419b8616a13d3ba5ef5b9c4c70b06bb3b2e6e5afbcc2e6a594", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4bc6f5134add58419b8616a13d3ba5ef5b9c4c70b06bb3b2e6e5afbcc2e6a594", kill_on_drop: false }` [INFO] [stdout] 4bc6f5134add58419b8616a13d3ba5ef5b9c4c70b06bb3b2e6e5afbcc2e6a594