[INFO] cloning repository https://github.com/fulcrumgenomics/guide-counter [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/fulcrumgenomics/guide-counter" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ffulcrumgenomics%2Fguide-counter", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ffulcrumgenomics%2Fguide-counter'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] fa6b44965490defe7ed75fccc118eabef3e2223d [INFO] testing fulcrumgenomics/guide-counter against master#61469b682c2b0bf9cebc4622f1859e2bb3b7ebca for pr-91743 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ffulcrumgenomics%2Fguide-counter" "/workspace/builds/worker-74/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-74/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/fulcrumgenomics/guide-counter on toolchain 61469b682c2b0bf9cebc4622f1859e2bb3b7ebca [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+61469b682c2b0bf9cebc4622f1859e2bb3b7ebca" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/fulcrumgenomics/guide-counter [INFO] finished tweaking git repo https://github.com/fulcrumgenomics/guide-counter [INFO] tweaked toml for git repo https://github.com/fulcrumgenomics/guide-counter written to /workspace/builds/worker-74/source/Cargo.toml [INFO] crate git repo https://github.com/fulcrumgenomics/guide-counter already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+61469b682c2b0bf9cebc4622f1859e2bb3b7ebca" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded fgoxide v0.1.3 [INFO] [stderr] Downloaded fastq v0.6.0 [INFO] [stderr] Downloaded clap v3.0.0-rc.9 [INFO] [stderr] Downloaded clap_derive v3.0.0-rc.9 [INFO] [stderr] Downloaded libmimalloc-sys v0.1.23 [INFO] [stderr] Downloaded mimalloc v0.1.27 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-74/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-74/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d190cb871061d98bc6d0581d85cb2ecb09a0f8a142ba5463de30be9999fc3251" "/opt/rustwide/cargo-home/bin/cargo" "+61469b682c2b0bf9cebc4622f1859e2bb3b7ebca" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 2a8b8bc577c05552c83a832a3018d387ae457e1bb5b7a81a3d2bfdde46af6090 [INFO] running `Command { std: "docker" "start" "-a" "2a8b8bc577c05552c83a832a3018d387ae457e1bb5b7a81a3d2bfdde46af6090", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "2a8b8bc577c05552c83a832a3018d387ae457e1bb5b7a81a3d2bfdde46af6090", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "2a8b8bc577c05552c83a832a3018d387ae457e1bb5b7a81a3d2bfdde46af6090", kill_on_drop: false }` [INFO] [stdout] 2a8b8bc577c05552c83a832a3018d387ae457e1bb5b7a81a3d2bfdde46af6090 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-74/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-74/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d190cb871061d98bc6d0581d85cb2ecb09a0f8a142ba5463de30be9999fc3251" "/opt/rustwide/cargo-home/bin/cargo" "+61469b682c2b0bf9cebc4622f1859e2bb3b7ebca" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 0a084a9c34ead87ba9765df38b7e38f43dac5dac880743b92622cea7ad187e01 [INFO] running `Command { std: "docker" "start" "-a" "0a084a9c34ead87ba9765df38b7e38f43dac5dac880743b92622cea7ad187e01", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling proc-macro2 v1.0.36 [INFO] [stderr] Compiling unicode-xid v0.2.2 [INFO] [stderr] Compiling cc v1.0.72 [INFO] [stderr] Compiling syn v1.0.84 [INFO] [stderr] Compiling memchr v2.4.1 [INFO] [stderr] Compiling libc v0.2.112 [INFO] [stderr] Compiling version_check v0.9.3 [INFO] [stderr] Compiling autocfg v1.0.1 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling serde_derive v1.0.132 [INFO] [stderr] Compiling pkg-config v0.3.24 [INFO] [stderr] Compiling crc32fast v1.3.0 [INFO] [stderr] Compiling serde v1.0.132 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling adler v1.0.2 [INFO] [stderr] Compiling log v0.4.14 [INFO] [stderr] Compiling regex-automata v0.1.10 [INFO] [stderr] Compiling unicode-segmentation v1.8.0 [INFO] [stderr] Compiling termcolor v1.1.2 [INFO] [stderr] Compiling anyhow v1.0.52 [INFO] [stderr] Compiling ryu v1.0.9 [INFO] [stderr] Compiling itoa v0.4.8 [INFO] [stderr] Compiling hashbrown v0.11.2 [INFO] [stderr] Compiling regex-syntax v0.6.25 [INFO] [stderr] Compiling either v1.6.1 [INFO] [stderr] Compiling once_cell v1.9.0 [INFO] [stderr] Compiling strsim v0.10.0 [INFO] [stderr] Compiling humantime v2.1.0 [INFO] [stderr] Compiling bitflags v1.3.2 [INFO] [stderr] Compiling textwrap v0.14.2 [INFO] [stderr] Compiling heck v0.3.3 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.4 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Compiling ahash v0.7.6 [INFO] [stderr] Compiling miniz_oxide v0.4.4 [INFO] [stderr] Compiling indexmap v1.7.0 [INFO] [stderr] Compiling itertools v0.10.3 [INFO] [stderr] Compiling aho-corasick v0.7.18 [INFO] [stderr] Compiling csv-core v0.1.10 [INFO] [stderr] Compiling os_str_bytes v6.0.0 [INFO] [stderr] Compiling quote v1.0.14 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling getrandom v0.2.3 [INFO] [stderr] Compiling libz-sys v1.1.3 [INFO] [stderr] Compiling lz4-sys v1.9.2 [INFO] [stderr] Compiling libmimalloc-sys v0.1.23 [INFO] [stderr] Compiling flate2 v1.0.22 [INFO] [stderr] Compiling regex v1.5.4 [INFO] [stderr] Compiling mimalloc v0.1.27 [INFO] [stderr] Compiling env_logger v0.8.4 [INFO] [stderr] Compiling thiserror-impl v1.0.30 [INFO] [stderr] Compiling clap_derive v3.0.0-rc.9 [INFO] [stderr] Compiling enum_dispatch v0.3.7 [INFO] [stderr] Compiling thiserror v1.0.30 [INFO] [stderr] Compiling clap v3.0.0-rc.9 [INFO] [stderr] Compiling lz4 v1.23.2 [INFO] [stderr] Compiling fastq v0.6.0 [INFO] [stderr] Compiling bstr v0.2.17 [INFO] [stderr] Compiling csv v1.1.6 [INFO] [stderr] Compiling fgoxide v0.1.3 [INFO] [stderr] Compiling guide-counter v0.1.3 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 51.65s [INFO] running `Command { std: "docker" "inspect" "0a084a9c34ead87ba9765df38b7e38f43dac5dac880743b92622cea7ad187e01", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "0a084a9c34ead87ba9765df38b7e38f43dac5dac880743b92622cea7ad187e01", kill_on_drop: false }` [INFO] [stdout] 0a084a9c34ead87ba9765df38b7e38f43dac5dac880743b92622cea7ad187e01 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-74/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-74/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d190cb871061d98bc6d0581d85cb2ecb09a0f8a142ba5463de30be9999fc3251" "/opt/rustwide/cargo-home/bin/cargo" "+61469b682c2b0bf9cebc4622f1859e2bb3b7ebca" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 2ebb591590afa355158939045720d50a5aaa33c6812b7a5fc4e42b1990675642 [INFO] running `Command { std: "docker" "start" "-a" "2ebb591590afa355158939045720d50a5aaa33c6812b7a5fc4e42b1990675642", kill_on_drop: false }` [INFO] [stderr] Compiling ppv-lite86 v0.2.15 [INFO] [stderr] Compiling remove_dir_all v0.5.3 [INFO] [stderr] Compiling getrandom v0.2.3 [INFO] [stderr] Compiling rand_core v0.6.3 [INFO] [stderr] Compiling ahash v0.7.6 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling rand v0.8.4 [INFO] [stderr] Compiling tempfile v3.2.0 [INFO] [stderr] Compiling guide-counter v0.1.3 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 44.44s [INFO] [stderr] Executable unittests src/main.rs (/opt/rustwide/target/debug/deps/guide_counter-8fa92aec0e6aafc5) [INFO] running `Command { std: "docker" "inspect" "2ebb591590afa355158939045720d50a5aaa33c6812b7a5fc4e42b1990675642", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "2ebb591590afa355158939045720d50a5aaa33c6812b7a5fc4e42b1990675642", kill_on_drop: false }` [INFO] [stdout] 2ebb591590afa355158939045720d50a5aaa33c6812b7a5fc4e42b1990675642 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-74/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-74/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d190cb871061d98bc6d0581d85cb2ecb09a0f8a142ba5463de30be9999fc3251" "/opt/rustwide/cargo-home/bin/cargo" "+61469b682c2b0bf9cebc4622f1859e2bb3b7ebca" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 25fbe00c77af96317a0e287db963961d44d46775bfe171616147bb446add07d3 [INFO] running `Command { std: "docker" "start" "-a" "25fbe00c77af96317a0e287db963961d44d46775bfe171616147bb446add07d3", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 3.40s [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/debug/deps/guide_counter-8fa92aec0e6aafc5) [INFO] [stdout] [INFO] [stdout] running 19 tests [INFO] [stdout] test commands::count::tests::test_determine_prefixes_finds_last_offset ... ok [INFO] [stdout] test commands::count::tests::test_determine_prefixes_finds_offset_zero ... ok [INFO] [stdout] test commands::count::tests::test_count_reads_handles_empty_fastq ... ok [INFO] [stdout] test commands::count::tests::test_determine_prefixes_actually_subsamples ... ok [INFO] [stdout] test commands::count::tests::test_build_lookup ... ok [INFO] [stdout] test commands::count::tests::test_determine_prefixes_min_fraction ... ok [INFO] [stdout] test commands::count::tests::test_sample_name ... ok [INFO] [stdout] test guide::tests::test_is_all_acgt ... ok [INFO] [stdout] test guide::tests::test_guide_library_rejects_duplicate_sequences ... ok [INFO] [stdout] test guide::tests::test_guide_library_positive ... ok [INFO] [stdout] test guide::tests::test_reading_guide_library_from_tsv_file ... ok [INFO] [stdout] test guide::tests::test_guide_library_rejects_mixed_length ... ok [INFO] [stdout] test guide::tests::test_guide_library_rejects_invalid_sequences ... ok [INFO] [stdout] test guide::tests::test_reading_guide_library_from_csv_file ... ok [INFO] [stdout] test guide::tests::test_guide_uppercases_sequence ... ok [INFO] [stdout] test guide::tests::test_load_guide_library_from_files ... ok [INFO] [stdout] test commands::count::tests::test_reads_shorter_than_guides_ok ... ok [INFO] [stdout] test commands::count::tests::test_count_reads ... ok [INFO] [stdout] test commands::count::tests::test_end_to_end ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 19 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.18s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "25fbe00c77af96317a0e287db963961d44d46775bfe171616147bb446add07d3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "25fbe00c77af96317a0e287db963961d44d46775bfe171616147bb446add07d3", kill_on_drop: false }` [INFO] [stdout] 25fbe00c77af96317a0e287db963961d44d46775bfe171616147bb446add07d3