[INFO] cloning repository https://github.com/chanzuckerberg/idseq-dedup
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/chanzuckerberg/idseq-dedup" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fchanzuckerberg%2Fidseq-dedup", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fchanzuckerberg%2Fidseq-dedup'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 65f04c4cce9518e6f93837a700bd843f6745fb55
[INFO] testing chanzuckerberg/idseq-dedup against master#61469b682c2b0bf9cebc4622f1859e2bb3b7ebca for pr-91743
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fchanzuckerberg%2Fidseq-dedup" "/workspace/builds/worker-11/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-11/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/chanzuckerberg/idseq-dedup on toolchain 61469b682c2b0bf9cebc4622f1859e2bb3b7ebca
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+61469b682c2b0bf9cebc4622f1859e2bb3b7ebca" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/chanzuckerberg/idseq-dedup
[INFO] finished tweaking git repo https://github.com/chanzuckerberg/idseq-dedup
[INFO] tweaked toml for git repo https://github.com/chanzuckerberg/idseq-dedup written to /workspace/builds/worker-11/source/Cargo.toml
[INFO] crate git repo https://github.com/chanzuckerberg/idseq-dedup already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+61469b682c2b0bf9cebc4622f1859e2bb3b7ebca" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded enum-map v0.6.3
[INFO] [stderr]   Downloaded hermit-abi v0.1.16
[INFO] [stderr]   Downloaded simple-error v0.2.2
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d190cb871061d98bc6d0581d85cb2ecb09a0f8a142ba5463de30be9999fc3251" "/opt/rustwide/cargo-home/bin/cargo" "+61469b682c2b0bf9cebc4622f1859e2bb3b7ebca" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 273b60684d6b81febe448697e6bed54670f234de31ad69c52d816ed7d2536a8b
[INFO] running `Command { std: "docker" "start" "-a" "273b60684d6b81febe448697e6bed54670f234de31ad69c52d816ed7d2536a8b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "273b60684d6b81febe448697e6bed54670f234de31ad69c52d816ed7d2536a8b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "273b60684d6b81febe448697e6bed54670f234de31ad69c52d816ed7d2536a8b", kill_on_drop: false }`
[INFO] [stdout] 273b60684d6b81febe448697e6bed54670f234de31ad69c52d816ed7d2536a8b
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d190cb871061d98bc6d0581d85cb2ecb09a0f8a142ba5463de30be9999fc3251" "/opt/rustwide/cargo-home/bin/cargo" "+61469b682c2b0bf9cebc4622f1859e2bb3b7ebca" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 41ba28f132c5f34400a86bad5aa4307f32e3078dddb7e8c48e0a6b966d2fb009
[INFO] running `Command { std: "docker" "start" "-a" "41ba28f132c5f34400a86bad5aa4307f32e3078dddb7e8c48e0a6b966d2fb009", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]    Compiling proc-macro2 v1.0.24
[INFO] [stderr]    Compiling unicode-xid v0.2.1
[INFO] [stderr]    Compiling syn v1.0.42
[INFO] [stderr]    Compiling autocfg v1.0.1
[INFO] [stderr]    Compiling serde_derive v1.0.116
[INFO] [stderr]    Compiling libc v0.2.78
[INFO] [stderr]    Compiling serde v1.0.116
[INFO] [stderr]    Compiling memchr v2.3.3
[INFO] [stderr]    Compiling byteorder v1.3.4
[INFO] [stderr]    Compiling getrandom v0.1.15
[INFO] [stderr]    Compiling lazy_static v1.4.0
[INFO] [stderr]    Compiling cfg-if v0.1.10
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling ppv-lite86 v0.2.9
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling ryu v1.0.5
[INFO] [stderr]    Compiling doc-comment v0.3.3
[INFO] [stderr]    Compiling regex-syntax v0.6.18
[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling bitflags v1.2.1
[INFO] [stderr]    Compiling ndarray v0.13.1
[INFO] [stderr]    Compiling unicode-segmentation v1.6.0
[INFO] [stderr]    Compiling hashbrown v0.9.1
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling array-macro v1.0.5
[INFO] [stderr]    Compiling bio v0.32.0
[INFO] [stderr]    Compiling unicode-width v0.1.8
[INFO] [stderr]    Compiling fixedbitset v0.2.0
[INFO] [stderr]    Compiling itoa v0.4.6
[INFO] [stderr]    Compiling either v1.6.1
[INFO] [stderr]    Compiling bit-vec v0.6.2
[INFO] [stderr]    Compiling ansi_term v0.11.0
[INFO] [stderr]    Compiling strsim v0.8.0
[INFO] [stderr]    Compiling fnv v1.0.7
[INFO] [stderr]    Compiling strum v0.18.0
[INFO] [stderr]    Compiling triple_accel v0.3.4
[INFO] [stderr]    Compiling bytecount v0.6.0
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling simple-error v0.2.2
[INFO] [stderr]    Compiling itertools v0.9.0
[INFO] [stderr]    Compiling thread_local v1.0.1
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling num-traits v0.2.12
[INFO] [stderr]    Compiling indexmap v1.6.0
[INFO] [stderr]    Compiling num-integer v0.1.43
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling textwrap v0.11.0
[INFO] [stderr]    Compiling matrixmultiply v0.2.3
[INFO] [stderr]    Compiling bit-set v0.5.2
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling heck v0.3.1
[INFO] [stderr]    Compiling regex-automata v0.1.9
[INFO] [stderr]    Compiling fxhash v0.2.1
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling aho-corasick v0.7.13
[INFO] [stderr]    Compiling csv-core v0.1.10
[INFO] [stderr]    Compiling quote v1.0.7
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling approx v0.3.2
[INFO] [stderr]    Compiling ordered-float v1.1.0
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling rand_core v0.5.1
[INFO] [stderr]    Compiling petgraph v0.5.1
[INFO] [stderr]    Compiling regex v1.3.9
[INFO] [stderr]    Compiling rand_chacha v0.2.2
[INFO] [stderr]    Compiling rand v0.7.3
[INFO] [stderr]    Compiling statrs v0.12.0
[INFO] [stderr]    Compiling derive-new v0.5.8
[INFO] [stderr]    Compiling snafu-derive v0.6.9
[INFO] [stderr]    Compiling enum-map-derive v0.4.3
[INFO] [stderr]    Compiling strum_macros v0.18.0
[INFO] [stderr]    Compiling getset v0.0.9
[INFO] [stderr]    Compiling enum-map v0.6.3
[INFO] [stderr]    Compiling snafu v0.6.9
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling bstr v0.2.13
[INFO] [stderr]    Compiling bio-types v0.7.0
[INFO] [stderr]    Compiling multimap v0.8.2
[INFO] [stderr]    Compiling clap v2.33.3
[INFO] [stderr]    Compiling csv v1.1.3
[INFO] [stderr]    Compiling czid-dedup v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 2m 19s
[INFO] running `Command { std: "docker" "inspect" "41ba28f132c5f34400a86bad5aa4307f32e3078dddb7e8c48e0a6b966d2fb009", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "41ba28f132c5f34400a86bad5aa4307f32e3078dddb7e8c48e0a6b966d2fb009", kill_on_drop: false }`
[INFO] [stdout] 41ba28f132c5f34400a86bad5aa4307f32e3078dddb7e8c48e0a6b966d2fb009
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d190cb871061d98bc6d0581d85cb2ecb09a0f8a142ba5463de30be9999fc3251" "/opt/rustwide/cargo-home/bin/cargo" "+61469b682c2b0bf9cebc4622f1859e2bb3b7ebca" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 01a874b1b852ca0bd01cc3957460d91041ca6e1a490f9e39bc4a8a614aaefe31
[INFO] running `Command { std: "docker" "start" "-a" "01a874b1b852ca0bd01cc3957460d91041ca6e1a490f9e39bc4a8a614aaefe31", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]    Compiling remove_dir_all v0.5.3
[INFO] [stderr]    Compiling tempfile v3.1.0
[INFO] [stderr]    Compiling czid-dedup v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 41.94s
[INFO] [stderr]   Executable unittests src/main.rs (/opt/rustwide/target/debug/deps/czid_dedup-d75da17d4024410b)
[INFO] running `Command { std: "docker" "inspect" "01a874b1b852ca0bd01cc3957460d91041ca6e1a490f9e39bc4a8a614aaefe31", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "01a874b1b852ca0bd01cc3957460d91041ca6e1a490f9e39bc4a8a614aaefe31", kill_on_drop: false }`
[INFO] [stdout] 01a874b1b852ca0bd01cc3957460d91041ca6e1a490f9e39bc4a8a614aaefe31
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d190cb871061d98bc6d0581d85cb2ecb09a0f8a142ba5463de30be9999fc3251" "/opt/rustwide/cargo-home/bin/cargo" "+61469b682c2b0bf9cebc4622f1859e2bb3b7ebca" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] fe324c329cc60d42befcf47b6b52ac77b35b9f351c10d1ddd41411fc75453a92
[INFO] running `Command { std: "docker" "start" "-a" "fe324c329cc60d42befcf47b6b52ac77b35b9f351c10d1ddd41411fc75453a92", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 4m 26s
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/czid_dedup-d75da17d4024410b)
[INFO] [stdout] 
[INFO] [stdout] running 11 tests
[INFO] [stdout] test clusters::test::test_insert_pair ... ok
[INFO] [stdout] test clusters::test::test_insert_single ... ok
[INFO] [stdout] test clusters::test::test_write_cluster_sizes ... ok
[INFO] [stdout] test paired::test::test_different_ids ... ok
[INFO] [stdout] test paired::test::test_r1_error ... ok
[INFO] [stdout] test paired::test::test_r1_longer ... ok
[INFO] [stdout] test paired::test::test_r2_longer ... ok
[INFO] [stdout] test test::test_run_dedup_paired_mismatched_files ... ok
[INFO] [stdout] test paired::test::test_r2_error ... ok
[INFO] [stdout] test test::test_run_dedup_paired ... ok
[INFO] [stdout] test test::test_run_dedup_single ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 11 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.12s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "fe324c329cc60d42befcf47b6b52ac77b35b9f351c10d1ddd41411fc75453a92", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "fe324c329cc60d42befcf47b6b52ac77b35b9f351c10d1ddd41411fc75453a92", kill_on_drop: false }`
[INFO] [stdout] fe324c329cc60d42befcf47b6b52ac77b35b9f351c10d1ddd41411fc75453a92