[INFO] fetching crate rust-htslib 0.38.2... [INFO] checking rust-htslib-0.38.2 against master#936f2600b6c903b04387f74ed5cbce88bb06d243 for pr-91141 [INFO] extracting crate rust-htslib 0.38.2 into /workspace/builds/worker-77/source [INFO] validating manifest of crates.io crate rust-htslib 0.38.2 on toolchain 936f2600b6c903b04387f74ed5cbce88bb06d243 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+936f2600b6c903b04387f74ed5cbce88bb06d243" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] removed /workspace/builds/worker-77/source/.cargo/config [INFO] started tweaking crates.io crate rust-htslib 0.38.2 [INFO] finished tweaking crates.io crate rust-htslib 0.38.2 [INFO] tweaked toml for crates.io crate rust-htslib 0.38.2 written to /workspace/builds/worker-77/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+936f2600b6c903b04387f74ed5cbce88bb06d243" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+936f2600b6c903b04387f74ed5cbce88bb06d243" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded linear-map v1.2.0 [INFO] [stderr] Downloaded fs-utils v1.1.4 [INFO] [stderr] Downloaded ieee754 v0.2.6 [INFO] [stderr] Downloaded bio-types v0.12.1 [INFO] [stderr] Downloaded libdeflate-sys v0.5.0 [INFO] [stderr] Downloaded hts-sys v2.0.2 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-77/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-77/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+936f2600b6c903b04387f74ed5cbce88bb06d243" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] f476eac1faaa97f0b24d444722d2168b16d8a16501946bcfa12a6f3dd219fa8f [INFO] running `Command { std: "docker" "start" "-a" "f476eac1faaa97f0b24d444722d2168b16d8a16501946bcfa12a6f3dd219fa8f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "f476eac1faaa97f0b24d444722d2168b16d8a16501946bcfa12a6f3dd219fa8f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f476eac1faaa97f0b24d444722d2168b16d8a16501946bcfa12a6f3dd219fa8f", kill_on_drop: false }` [INFO] [stdout] f476eac1faaa97f0b24d444722d2168b16d8a16501946bcfa12a6f3dd219fa8f [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-77/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-77/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+936f2600b6c903b04387f74ed5cbce88bb06d243" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 8f6267e619fafe00f144979d13b9fed53824776ec412e813eb430cd08a215bf5 [INFO] running `Command { std: "docker" "start" "-a" "8f6267e619fafe00f144979d13b9fed53824776ec412e813eb430cd08a215bf5", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling syn v1.0.82 [INFO] [stderr] Compiling memchr v2.4.1 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling rustversion v1.0.5 [INFO] [stderr] Checking tinyvec_macros v0.1.0 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling unicode-segmentation v1.8.0 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Checking matches v0.1.9 [INFO] [stderr] Checking unicode-bidi v0.3.7 [INFO] [stderr] Checking linear-map v1.2.0 [INFO] [stderr] Checking difference v2.0.0 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking ieee754 v0.2.6 [INFO] [stderr] Compiling jobserver v0.1.24 [INFO] [stderr] Checking getrandom v0.2.3 [INFO] [stderr] Checking bincode v1.3.3 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Checking form_urlencoded v1.0.1 [INFO] [stderr] Checking tinyvec v1.5.1 [INFO] [stderr] Checking pretty_assertions v0.6.1 [INFO] [stderr] Checking rand_core v0.6.3 [INFO] [stderr] Compiling cc v1.0.72 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Compiling heck v0.3.3 [INFO] [stderr] Checking rand v0.8.4 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Checking aho-corasick v0.7.18 [INFO] [stderr] Compiling cmake v0.1.46 [INFO] [stderr] Compiling openssl-src v300.0.2+3.0.0 [INFO] [stderr] Checking unicode-normalization v0.1.19 [INFO] [stderr] Checking tempfile v3.2.0 [INFO] [stderr] Compiling libz-sys v1.1.3 [INFO] [stderr] Compiling openssl-sys v0.9.71 [INFO] [stderr] Compiling curl-sys v0.4.51+curl-7.80.0 [INFO] [stderr] Compiling lzma-sys v0.1.17 [INFO] [stderr] Compiling bzip2-sys v0.1.11+1.0.8 [INFO] [stderr] Compiling hts-sys v2.0.2 [INFO] [stderr] Checking regex v1.5.4 [INFO] [stderr] Checking idna v0.2.3 [INFO] [stderr] Checking url v2.2.2 [INFO] [stderr] Compiling thiserror-impl v1.0.30 [INFO] [stderr] Compiling strum_macros v0.23.1 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Checking thiserror v1.0.30 [INFO] [stderr] Checking bio-types v0.12.1 [INFO] [stderr] Checking rust-htslib v0.38.2 (/opt/rustwide/workdir) [INFO] [stdout] warning: field is never read: `buffer` [INFO] [stdout] --> src/bcf/record.rs:133:5 [INFO] [stdout] | [INFO] [stdout] 133 | buffer: B, [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `hts_format` [INFO] [stdout] --> src/tbx/mod.rs:94:5 [INFO] [stdout] | [INFO] [stdout] 94 | hts_format: htslib::htsExactFormat, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 2 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `buffer` [INFO] [stdout] --> src/bcf/record.rs:133:5 [INFO] [stdout] | [INFO] [stdout] 133 | buffer: B, [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `hts_format` [INFO] [stdout] --> src/tbx/mod.rs:94:5 [INFO] [stdout] | [INFO] [stdout] 94 | hts_format: htslib::htsExactFormat, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 2 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 52.46s [INFO] running `Command { std: "docker" "inspect" "8f6267e619fafe00f144979d13b9fed53824776ec412e813eb430cd08a215bf5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "8f6267e619fafe00f144979d13b9fed53824776ec412e813eb430cd08a215bf5", kill_on_drop: false }` [INFO] [stdout] 8f6267e619fafe00f144979d13b9fed53824776ec412e813eb430cd08a215bf5