[INFO] fetching crate netcdf 0.6.1... [INFO] checking netcdf-0.6.1 against master#936f2600b6c903b04387f74ed5cbce88bb06d243 for pr-91141 [INFO] extracting crate netcdf 0.6.1 into /workspace/builds/worker-8/source [INFO] validating manifest of crates.io crate netcdf 0.6.1 on toolchain 936f2600b6c903b04387f74ed5cbce88bb06d243 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+936f2600b6c903b04387f74ed5cbce88bb06d243" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate netcdf 0.6.1 [INFO] finished tweaking crates.io crate netcdf 0.6.1 [INFO] tweaked toml for crates.io crate netcdf 0.6.1 written to /workspace/builds/worker-8/source/Cargo.toml [INFO] crate crates.io crate netcdf 0.6.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+936f2600b6c903b04387f74ed5cbce88bb06d243" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+936f2600b6c903b04387f74ed5cbce88bb06d243" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 885f8264babd34ab83ecb7da03e9a9e451b53db70077d56204ef9f6874d9a6ea [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "885f8264babd34ab83ecb7da03e9a9e451b53db70077d56204ef9f6874d9a6ea", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "885f8264babd34ab83ecb7da03e9a9e451b53db70077d56204ef9f6874d9a6ea", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "885f8264babd34ab83ecb7da03e9a9e451b53db70077d56204ef9f6874d9a6ea", kill_on_drop: false }` [INFO] [stdout] 885f8264babd34ab83ecb7da03e9a9e451b53db70077d56204ef9f6874d9a6ea [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+936f2600b6c903b04387f74ed5cbce88bb06d243" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] f4568bccd6e5c9f875465d324c8a0bb50698224af892a9e0ef68adf5cafd15ea [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "f4568bccd6e5c9f875465d324c8a0bb50698224af892a9e0ef68adf5cafd15ea", kill_on_drop: false }` [INFO] [stderr] Compiling once_cell v1.5.2 [INFO] [stderr] Compiling netcdf-sys v0.3.4 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Compiling unicode-segmentation v1.7.1 [INFO] [stderr] Checking remove_dir_all v0.5.3 [INFO] [stderr] Compiling libloading v0.6.7 [INFO] [stderr] Compiling libz-sys v1.1.2 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Checking getrandom v0.2.2 [INFO] [stderr] Compiling quote v1.0.8 [INFO] [stderr] Checking clap v2.33.3 [INFO] [stderr] Checking matrixmultiply v0.2.4 [INFO] [stderr] Compiling thread_local v1.1.2 [INFO] [stderr] Compiling syn v1.0.60 [INFO] [stderr] Checking rand_core v0.6.1 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.4 [INFO] [stderr] Compiling heck v0.3.2 [INFO] [stderr] Compiling regex v1.4.3 [INFO] [stderr] Checking rand_chacha v0.3.0 [INFO] [stderr] Checking rand v0.8.3 [INFO] [stderr] Checking ndarray v0.13.1 [INFO] [stderr] Checking tempfile v3.2.0 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Compiling hdf5-sys v0.7.1 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.1` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-1b5021177b08d68b/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:549:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x56501852929c - std::backtrace_rs::backtrace::libunwind::trace::h7630ba4cba718aa0 [INFO] [stderr] at /rustc/936f2600b6c903b04387f74ed5cbce88bb06d243/library/std/src/../../backtrace/src/backtrace/libunwind.rs:93:5 [INFO] [stderr] 1: 0x56501852929c - std::backtrace_rs::backtrace::trace_unsynchronized::he7498e79c157f5ac [INFO] [stderr] at /rustc/936f2600b6c903b04387f74ed5cbce88bb06d243/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x56501852929c - std::sys_common::backtrace::_print_fmt::hdaebadaee17bca49 [INFO] [stderr] at /rustc/936f2600b6c903b04387f74ed5cbce88bb06d243/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x56501852929c - ::fmt::h82b0e3aaf8a96140 [INFO] [stderr] at /rustc/936f2600b6c903b04387f74ed5cbce88bb06d243/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x565018547cfc - core::fmt::write::h72801a82c94e6ff1 [INFO] [stderr] at /rustc/936f2600b6c903b04387f74ed5cbce88bb06d243/library/core/src/fmt/mod.rs:1149:17 [INFO] [stderr] 5: 0x565018525a65 - std::io::Write::write_fmt::hc2da38dc44811df8 [INFO] [stderr] at /rustc/936f2600b6c903b04387f74ed5cbce88bb06d243/library/std/src/io/mod.rs:1697:15 [INFO] [stderr] 6: 0x56501852ac10 - std::sys_common::backtrace::_print::h1c9a1d19c48821c1 [INFO] [stderr] at /rustc/936f2600b6c903b04387f74ed5cbce88bb06d243/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x56501852ac10 - std::sys_common::backtrace::print::h7ce8802039fa9d0e [INFO] [stderr] at /rustc/936f2600b6c903b04387f74ed5cbce88bb06d243/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x56501852ac10 - std::panicking::default_hook::{{closure}}::hb2a74a8c1499c326 [INFO] [stderr] at /rustc/936f2600b6c903b04387f74ed5cbce88bb06d243/library/std/src/panicking.rs:211:50 [INFO] [stderr] 9: 0x56501852a7bb - std::panicking::default_hook::hf4f180b00076f2b2 [INFO] [stderr] at /rustc/936f2600b6c903b04387f74ed5cbce88bb06d243/library/std/src/panicking.rs:228:9 [INFO] [stderr] 10: 0x56501852b2c4 - std::panicking::rust_panic_with_hook::he85ce8435493b711 [INFO] [stderr] at /rustc/936f2600b6c903b04387f74ed5cbce88bb06d243/library/std/src/panicking.rs:606:17 [INFO] [stderr] 11: 0x56501834f432 - std::panicking::begin_panic::{{closure}}::h88399fedc2d4e742 [INFO] [stderr] at /rustc/936f2600b6c903b04387f74ed5cbce88bb06d243/library/std/src/panicking.rs:526:9 [INFO] [stderr] 12: 0x56501834f0d9 - std::sys_common::backtrace::__rust_end_short_backtrace::h430b5cce4945b99c [INFO] [stderr] at /rustc/936f2600b6c903b04387f74ed5cbce88bb06d243/library/std/src/sys_common/backtrace.rs:139:18 [INFO] [stderr] 13: 0x56501834f373 - std::panicking::begin_panic::h49da6780978a9b74 [INFO] [stderr] at /rustc/936f2600b6c903b04387f74ed5cbce88bb06d243/library/std/src/panicking.rs:525:12 [INFO] [stderr] 14: 0x565018322507 - build_script_build::LibrarySearcher::try_locate_hdf5_library::h94964d9f791dbd7e [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:549:13 [INFO] [stderr] 15: 0x565018323c47 - build_script_build::main::h564450c69066b955 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:647:9 [INFO] [stderr] 16: 0x5650183294bb - core::ops::function::FnOnce::call_once::h6a58030495beaf48 [INFO] [stderr] at /rustc/936f2600b6c903b04387f74ed5cbce88bb06d243/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 17: 0x56501832fcde - std::sys_common::backtrace::__rust_begin_short_backtrace::hc00e07ff148adfa6 [INFO] [stderr] at /rustc/936f2600b6c903b04387f74ed5cbce88bb06d243/library/std/src/sys_common/backtrace.rs:123:18 [INFO] [stderr] 18: 0x56501832fd71 - std::rt::lang_start::{{closure}}::h6b03565d03304714 [INFO] [stderr] at /rustc/936f2600b6c903b04387f74ed5cbce88bb06d243/library/std/src/rt.rs:145:18 [INFO] [stderr] 19: 0x565018528ae1 - core::ops::function::impls:: for &F>::call_once::h0e73392810ecd318 [INFO] [stderr] at /rustc/936f2600b6c903b04387f74ed5cbce88bb06d243/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 20: 0x565018528ae1 - std::panicking::try::do_call::h12dcb4a4f352a507 [INFO] [stderr] at /rustc/936f2600b6c903b04387f74ed5cbce88bb06d243/library/std/src/panicking.rs:406:40 [INFO] [stderr] 21: 0x565018528ae1 - std::panicking::try::h0d978c76ab4a3863 [INFO] [stderr] at /rustc/936f2600b6c903b04387f74ed5cbce88bb06d243/library/std/src/panicking.rs:370:19 [INFO] [stderr] 22: 0x565018528ae1 - std::panic::catch_unwind::hab40227675186980 [INFO] [stderr] at /rustc/936f2600b6c903b04387f74ed5cbce88bb06d243/library/std/src/panic.rs:133:14 [INFO] [stderr] 23: 0x565018528ae1 - std::rt::lang_start_internal::{{closure}}::hc34786299e7d2cf7 [INFO] [stderr] at /rustc/936f2600b6c903b04387f74ed5cbce88bb06d243/library/std/src/rt.rs:128:48 [INFO] [stderr] 24: 0x565018528ae1 - std::panicking::try::do_call::h38e7a9128f21d387 [INFO] [stderr] at /rustc/936f2600b6c903b04387f74ed5cbce88bb06d243/library/std/src/panicking.rs:406:40 [INFO] [stderr] 25: 0x565018528ae1 - std::panicking::try::h32d4e72fd8922bce [INFO] [stderr] at /rustc/936f2600b6c903b04387f74ed5cbce88bb06d243/library/std/src/panicking.rs:370:19 [INFO] [stderr] 26: 0x565018528ae1 - std::panic::catch_unwind::h9a345671d889d41f [INFO] [stderr] at /rustc/936f2600b6c903b04387f74ed5cbce88bb06d243/library/std/src/panic.rs:133:14 [INFO] [stderr] 27: 0x565018528ae1 - std::rt::lang_start_internal::h9e691a4f557eb2a3 [INFO] [stderr] at /rustc/936f2600b6c903b04387f74ed5cbce88bb06d243/library/std/src/rt.rs:128:20 [INFO] [stderr] 28: 0x56501832fd40 - std::rt::lang_start::haadf84968b8e8250 [INFO] [stderr] at /rustc/936f2600b6c903b04387f74ed5cbce88bb06d243/library/std/src/rt.rs:144:17 [INFO] [stderr] 29: 0x5650183250ec - main [INFO] [stderr] 30: 0x7fe508ca40b3 - __libc_start_main [INFO] [stderr] 31: 0x56501831ddae - _start [INFO] [stderr] 32: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "f4568bccd6e5c9f875465d324c8a0bb50698224af892a9e0ef68adf5cafd15ea", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f4568bccd6e5c9f875465d324c8a0bb50698224af892a9e0ef68adf5cafd15ea", kill_on_drop: false }` [INFO] [stdout] f4568bccd6e5c9f875465d324c8a0bb50698224af892a9e0ef68adf5cafd15ea