[INFO] fetching crate hts 0.1.18... [INFO] checking hts-0.1.18 against master#936f2600b6c903b04387f74ed5cbce88bb06d243 for pr-91141 [INFO] extracting crate hts 0.1.18 into /workspace/builds/worker-9/source [INFO] validating manifest of crates.io crate hts 0.1.18 on toolchain 936f2600b6c903b04387f74ed5cbce88bb06d243 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+936f2600b6c903b04387f74ed5cbce88bb06d243" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate hts 0.1.18 [INFO] finished tweaking crates.io crate hts 0.1.18 [INFO] tweaked toml for crates.io crate hts 0.1.18 written to /workspace/builds/worker-9/source/Cargo.toml [INFO] crate crates.io crate hts 0.1.18 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+936f2600b6c903b04387f74ed5cbce88bb06d243" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+936f2600b6c903b04387f74ed5cbce88bb06d243" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] e4d83a3b5eece5fa3888f109087a477681014aaadbceb4a3ba8fadc36186cdae [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "e4d83a3b5eece5fa3888f109087a477681014aaadbceb4a3ba8fadc36186cdae", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "e4d83a3b5eece5fa3888f109087a477681014aaadbceb4a3ba8fadc36186cdae", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e4d83a3b5eece5fa3888f109087a477681014aaadbceb4a3ba8fadc36186cdae", kill_on_drop: false }` [INFO] [stdout] e4d83a3b5eece5fa3888f109087a477681014aaadbceb4a3ba8fadc36186cdae [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+936f2600b6c903b04387f74ed5cbce88bb06d243" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] c89e895434ffdb26ffc6914a8b2500d6d140cc33689799ee2245ee42c2b65b12 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "c89e895434ffdb26ffc6914a8b2500d6d140cc33689799ee2245ee42c2b65b12", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling proc-macro2 v1.0.26 [INFO] [stderr] Compiling unicode-width v0.1.8 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling bindgen v0.55.1 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling termcolor v1.1.2 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling shlex v0.1.1 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Compiling nom v5.1.2 [INFO] [stderr] Compiling libloading v0.7.0 [INFO] [stderr] Compiling memchr v2.3.4 [INFO] [stderr] Compiling libc v0.2.93 [INFO] [stderr] Compiling log v0.4.14 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling humantime v1.3.0 [INFO] [stderr] Compiling aho-corasick v0.7.15 [INFO] [stderr] Compiling clang-sys v1.2.0 [INFO] [stderr] Compiling quote v1.0.9 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling which v3.1.1 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling regex v1.4.5 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Compiling env_logger v0.7.1 [INFO] [stderr] Compiling hts v0.1.18 (/opt/rustwide/workdir) [INFO] [stderr] error: failed to run custom build command for `hts v0.1.18 (/opt/rustwide/workdir)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hts-f3b546647b0bea3c/build-script-build` (exit status: 101) [INFO] [stderr] --- stderr [INFO] [stderr] + pushd /opt/rustwide/target/debug/build/hts-df95dbbdf8a9417a/out [INFO] [stderr] + HTSLIB_VERSION=1.11 [INFO] [stderr] + rm -rf /opt/rustwide/target/debug/build/hts-df95dbbdf8a9417a/out/htslib [INFO] [stderr] + git clone --recursive -b 1.11 https://github.com/samtools/htslib.git [INFO] [stderr] Cloning into 'htslib'... [INFO] [stderr] fatal: unable to access 'https://github.com/samtools/htslib.git/': Could not resolve host: github.com [INFO] [stderr] thread 'main' panicked at 'assertion failed: Command::new(\"bash\").args(&[\"build_htslib.sh\",\n &version]).stdout(std::process::Stdio::null()).spawn().expect(\"Unable to build htslib\").wait().unwrap().success()', build.rs:33:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x5602ae7691dc - std::backtrace_rs::backtrace::libunwind::trace::h7630ba4cba718aa0 [INFO] [stderr] at /rustc/936f2600b6c903b04387f74ed5cbce88bb06d243/library/std/src/../../backtrace/src/backtrace/libunwind.rs:93:5 [INFO] [stderr] 1: 0x5602ae7691dc - std::backtrace_rs::backtrace::trace_unsynchronized::he7498e79c157f5ac [INFO] [stderr] at /rustc/936f2600b6c903b04387f74ed5cbce88bb06d243/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x5602ae7691dc - std::sys_common::backtrace::_print_fmt::hdaebadaee17bca49 [INFO] [stderr] at /rustc/936f2600b6c903b04387f74ed5cbce88bb06d243/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x5602ae7691dc - ::fmt::h82b0e3aaf8a96140 [INFO] [stderr] at /rustc/936f2600b6c903b04387f74ed5cbce88bb06d243/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x5602ae78e10c - core::fmt::write::h72801a82c94e6ff1 [INFO] [stderr] at /rustc/936f2600b6c903b04387f74ed5cbce88bb06d243/library/core/src/fmt/mod.rs:1149:17 [INFO] [stderr] 5: 0x5602ae765425 - std::io::Write::write_fmt::hc2da38dc44811df8 [INFO] [stderr] at /rustc/936f2600b6c903b04387f74ed5cbce88bb06d243/library/std/src/io/mod.rs:1697:15 [INFO] [stderr] 6: 0x5602ae76ac30 - std::sys_common::backtrace::_print::h1c9a1d19c48821c1 [INFO] [stderr] at /rustc/936f2600b6c903b04387f74ed5cbce88bb06d243/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x5602ae76ac30 - std::sys_common::backtrace::print::h7ce8802039fa9d0e [INFO] [stderr] at /rustc/936f2600b6c903b04387f74ed5cbce88bb06d243/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x5602ae76ac30 - std::panicking::default_hook::{{closure}}::hb2a74a8c1499c326 [INFO] [stderr] at /rustc/936f2600b6c903b04387f74ed5cbce88bb06d243/library/std/src/panicking.rs:211:50 [INFO] [stderr] 9: 0x5602ae76a7db - std::panicking::default_hook::hf4f180b00076f2b2 [INFO] [stderr] at /rustc/936f2600b6c903b04387f74ed5cbce88bb06d243/library/std/src/panicking.rs:228:9 [INFO] [stderr] 10: 0x5602ae76b2e4 - std::panicking::rust_panic_with_hook::he85ce8435493b711 [INFO] [stderr] at /rustc/936f2600b6c903b04387f74ed5cbce88bb06d243/library/std/src/panicking.rs:606:17 [INFO] [stderr] 11: 0x5602ae76ad92 - std::panicking::begin_panic_handler::{{closure}}::h31e15f69e6235bd2 [INFO] [stderr] at /rustc/936f2600b6c903b04387f74ed5cbce88bb06d243/library/std/src/panicking.rs:500:13 [INFO] [stderr] 12: 0x5602ae769694 - std::sys_common::backtrace::__rust_end_short_backtrace::hfce2fadb61aaa3ae [INFO] [stderr] at /rustc/936f2600b6c903b04387f74ed5cbce88bb06d243/library/std/src/sys_common/backtrace.rs:139:18 [INFO] [stderr] 13: 0x5602ae76ad29 - rust_begin_unwind [INFO] [stderr] at /rustc/936f2600b6c903b04387f74ed5cbce88bb06d243/library/std/src/panicking.rs:498:5 [INFO] [stderr] 14: 0x5602ae241751 - core::panicking::panic_fmt::h7b8580d81fcbbacd [INFO] [stderr] at /rustc/936f2600b6c903b04387f74ed5cbce88bb06d243/library/core/src/panicking.rs:107:14 [INFO] [stderr] 15: 0x5602ae24169d - core::panicking::panic::h50b51d19800453c0 [INFO] [stderr] at /rustc/936f2600b6c903b04387f74ed5cbce88bb06d243/library/core/src/panicking.rs:48:5 [INFO] [stderr] 16: 0x5602ae2427db - build_script_build::build_own_htslib::h8d7e7a7e73c459bc [INFO] [stderr] at /opt/rustwide/workdir/build.rs:33:5 [INFO] [stderr] 17: 0x5602ae242c34 - build_script_build::main::h4178d9fa30ad816c [INFO] [stderr] at /opt/rustwide/workdir/build.rs:65:9 [INFO] [stderr] 18: 0x5602ae243e9b - core::ops::function::FnOnce::call_once::h4d8aee6a7b9be081 [INFO] [stderr] at /rustc/936f2600b6c903b04387f74ed5cbce88bb06d243/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 19: 0x5602ae243a1e - std::sys_common::backtrace::__rust_begin_short_backtrace::h1cc66405d6dbbd90 [INFO] [stderr] at /rustc/936f2600b6c903b04387f74ed5cbce88bb06d243/library/std/src/sys_common/backtrace.rs:123:18 [INFO] [stderr] 20: 0x5602ae2442e1 - std::rt::lang_start::{{closure}}::hd778ecd07891ef54 [INFO] [stderr] at /rustc/936f2600b6c903b04387f74ed5cbce88bb06d243/library/std/src/rt.rs:145:18 [INFO] [stderr] 21: 0x5602ae768a21 - core::ops::function::impls:: for &F>::call_once::h0e73392810ecd318 [INFO] [stderr] at /rustc/936f2600b6c903b04387f74ed5cbce88bb06d243/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 22: 0x5602ae768a21 - std::panicking::try::do_call::h12dcb4a4f352a507 [INFO] [stderr] at /rustc/936f2600b6c903b04387f74ed5cbce88bb06d243/library/std/src/panicking.rs:406:40 [INFO] [stderr] 23: 0x5602ae768a21 - std::panicking::try::h0d978c76ab4a3863 [INFO] [stderr] at /rustc/936f2600b6c903b04387f74ed5cbce88bb06d243/library/std/src/panicking.rs:370:19 [INFO] [stderr] 24: 0x5602ae768a21 - std::panic::catch_unwind::hab40227675186980 [INFO] [stderr] at /rustc/936f2600b6c903b04387f74ed5cbce88bb06d243/library/std/src/panic.rs:133:14 [INFO] [stderr] 25: 0x5602ae768a21 - std::rt::lang_start_internal::{{closure}}::hc34786299e7d2cf7 [INFO] [stderr] at /rustc/936f2600b6c903b04387f74ed5cbce88bb06d243/library/std/src/rt.rs:128:48 [INFO] [stderr] 26: 0x5602ae768a21 - std::panicking::try::do_call::h38e7a9128f21d387 [INFO] [stderr] at /rustc/936f2600b6c903b04387f74ed5cbce88bb06d243/library/std/src/panicking.rs:406:40 [INFO] [stderr] 27: 0x5602ae768a21 - std::panicking::try::h32d4e72fd8922bce [INFO] [stderr] at /rustc/936f2600b6c903b04387f74ed5cbce88bb06d243/library/std/src/panicking.rs:370:19 [INFO] [stderr] 28: 0x5602ae768a21 - std::panic::catch_unwind::h9a345671d889d41f [INFO] [stderr] at /rustc/936f2600b6c903b04387f74ed5cbce88bb06d243/library/std/src/panic.rs:133:14 [INFO] [stderr] 29: 0x5602ae768a21 - std::rt::lang_start_internal::h9e691a4f557eb2a3 [INFO] [stderr] at /rustc/936f2600b6c903b04387f74ed5cbce88bb06d243/library/std/src/rt.rs:128:20 [INFO] [stderr] 30: 0x5602ae2442b0 - std::rt::lang_start::h825ce250d15146f5 [INFO] [stderr] at /rustc/936f2600b6c903b04387f74ed5cbce88bb06d243/library/std/src/rt.rs:144:17 [INFO] [stderr] 31: 0x5602ae24329c - main [INFO] [stderr] 32: 0x7fbd1c42b0b3 - __libc_start_main [INFO] [stderr] 33: 0x5602ae241eee - _start [INFO] [stderr] 34: 0x0 - [INFO] running `Command { std: "docker" "inspect" "c89e895434ffdb26ffc6914a8b2500d6d140cc33689799ee2245ee42c2b65b12", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c89e895434ffdb26ffc6914a8b2500d6d140cc33689799ee2245ee42c2b65b12", kill_on_drop: false }` [INFO] [stdout] c89e895434ffdb26ffc6914a8b2500d6d140cc33689799ee2245ee42c2b65b12