[INFO] cloning repository https://github.com/p-sud/gembs-to-bismark-bed-converter
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/p-sud/gembs-to-bismark-bed-converter" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fp-sud%2Fgembs-to-bismark-bed-converter", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fp-sud%2Fgembs-to-bismark-bed-converter'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 253b463673014677fc8ef6392643d036966fab89
[INFO] checking p-sud/gembs-to-bismark-bed-converter against master#936f2600b6c903b04387f74ed5cbce88bb06d243 for pr-91141
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fp-sud%2Fgembs-to-bismark-bed-converter" "/workspace/builds/worker-21/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-21/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/p-sud/gembs-to-bismark-bed-converter on toolchain 936f2600b6c903b04387f74ed5cbce88bb06d243
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+936f2600b6c903b04387f74ed5cbce88bb06d243" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/p-sud/gembs-to-bismark-bed-converter
[INFO] finished tweaking git repo https://github.com/p-sud/gembs-to-bismark-bed-converter
[INFO] tweaked toml for git repo https://github.com/p-sud/gembs-to-bismark-bed-converter written to /workspace/builds/worker-21/source/Cargo.toml
[INFO] crate git repo https://github.com/p-sud/gembs-to-bismark-bed-converter already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+936f2600b6c903b04387f74ed5cbce88bb06d243" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded proc-macro-error-attr v0.4.3
[INFO] [stderr]   Downloaded syn-mid v0.4.0
[INFO] [stderr]   Downloaded rustversion v1.0.1
[INFO] [stderr]   Downloaded proc-macro-error v0.4.4
[INFO] [stderr]   Downloaded structopt-derive v0.4.0
[INFO] [stderr]   Downloaded structopt v0.3.7
[INFO] [stderr]   Downloaded csv v1.1.2
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-21/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-21/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+936f2600b6c903b04387f74ed5cbce88bb06d243" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 8ea51f26dfb35ae5d1a58cfa6ff4cd8deb7c6f6c75e88034f7327f8a4ad995bd
[INFO] running `Command { std: "docker" "start" "-a" "8ea51f26dfb35ae5d1a58cfa6ff4cd8deb7c6f6c75e88034f7327f8a4ad995bd", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "8ea51f26dfb35ae5d1a58cfa6ff4cd8deb7c6f6c75e88034f7327f8a4ad995bd", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "8ea51f26dfb35ae5d1a58cfa6ff4cd8deb7c6f6c75e88034f7327f8a4ad995bd", kill_on_drop: false }`
[INFO] [stdout] 8ea51f26dfb35ae5d1a58cfa6ff4cd8deb7c6f6c75e88034f7327f8a4ad995bd
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-21/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-21/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+936f2600b6c903b04387f74ed5cbce88bb06d243" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 369e91ce961ddd657ecee46a113de9262a166c17706120f754e7e48003be07a2
[INFO] running `Command { std: "docker" "start" "-a" "369e91ce961ddd657ecee46a113de9262a166c17706120f754e7e48003be07a2", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.7
[INFO] [stderr]    Compiling syn v1.0.13
[INFO] [stderr]    Compiling libc v0.2.66
[INFO] [stderr]    Compiling byteorder v1.3.2
[INFO] [stderr]    Compiling memchr v2.2.1
[INFO] [stderr]    Compiling serde v1.0.104
[INFO] [stderr]    Compiling ryu v1.0.2
[INFO] [stderr]     Checking unicode-width v0.1.7
[INFO] [stderr]     Checking ansi_term v0.11.0
[INFO] [stderr]     Checking strsim v0.8.0
[INFO] [stderr]     Checking textwrap v0.11.0
[INFO] [stderr]     Checking regex-automata v0.1.8
[INFO] [stderr]    Compiling quote v1.0.2
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]     Checking clap v2.33.0
[INFO] [stderr]     Checking csv-core v0.1.6
[INFO] [stderr]    Compiling syn-mid v0.4.0
[INFO] [stderr]    Compiling rustversion v1.0.1
[INFO] [stderr]    Compiling serde_derive v1.0.104
[INFO] [stderr]    Compiling proc-macro-error v0.4.4
[INFO] [stderr]    Compiling proc-macro-error-attr v0.4.3
[INFO] [stderr]    Compiling structopt-derive v0.4.0
[INFO] [stderr]     Checking structopt v0.3.7
[INFO] [stderr]     Checking bstr v0.2.8
[INFO] [stderr]     Checking csv v1.1.2
[INFO] [stderr]     Checking gembs-to-bismark-bed-converter v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: field is never read: `reference_call`
[INFO] [stdout]   --> src/main.rs:24:5
[INFO] [stdout]    |
[INFO] [stdout] 24 |     reference_call: String,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field is never read: `genotype_call`
[INFO] [stdout]   --> src/main.rs:26:5
[INFO] [stdout]    |
[INFO] [stdout] 26 |     genotype_call: String,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field is never read: `flags`
[INFO] [stdout]   --> src/main.rs:28:5
[INFO] [stdout]    |
[INFO] [stdout] 28 |     flags: String,
[INFO] [stdout]    |     ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field is never read: `methylation_estimate`
[INFO] [stdout]   --> src/main.rs:30:5
[INFO] [stdout]    |
[INFO] [stdout] 30 |     methylation_estimate: String,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field is never read: `total_bases_supporting_call`
[INFO] [stdout]   --> src/main.rs:35:5
[INFO] [stdout]    |
[INFO] [stdout] 35 |     total_bases_supporting_call: u16,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field is never read: `total_bases`
[INFO] [stdout]   --> src/main.rs:39:5
[INFO] [stdout]    |
[INFO] [stdout] 39 |     total_bases: u16,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 6 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field is never read: `reference_call`
[INFO] [stdout]   --> src/main.rs:24:5
[INFO] [stdout]    |
[INFO] [stdout] 24 |     reference_call: String,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field is never read: `genotype_call`
[INFO] [stdout]   --> src/main.rs:26:5
[INFO] [stdout]    |
[INFO] [stdout] 26 |     genotype_call: String,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field is never read: `flags`
[INFO] [stdout]   --> src/main.rs:28:5
[INFO] [stdout]    |
[INFO] [stdout] 28 |     flags: String,
[INFO] [stdout]    |     ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field is never read: `methylation_estimate`
[INFO] [stdout]   --> src/main.rs:30:5
[INFO] [stdout]    |
[INFO] [stdout] 30 |     methylation_estimate: String,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field is never read: `total_bases_supporting_call`
[INFO] [stdout]   --> src/main.rs:35:5
[INFO] [stdout]    |
[INFO] [stdout] 35 |     total_bases_supporting_call: u16,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field is never read: `total_bases`
[INFO] [stdout]   --> src/main.rs:39:5
[INFO] [stdout]    |
[INFO] [stdout] 39 |     total_bases: u16,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 6 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 22.11s
[INFO] running `Command { std: "docker" "inspect" "369e91ce961ddd657ecee46a113de9262a166c17706120f754e7e48003be07a2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "369e91ce961ddd657ecee46a113de9262a166c17706120f754e7e48003be07a2", kill_on_drop: false }`
[INFO] [stdout] 369e91ce961ddd657ecee46a113de9262a166c17706120f754e7e48003be07a2