[INFO] fetching crate psdm 0.1.0...
[INFO] testing psdm-0.1.0 against try#722e1797249a965b6335aebd65d777f917e498f1 for pr-91031
[INFO] extracting crate psdm 0.1.0 into /workspace/builds/worker-41/source
[INFO] validating manifest of crates.io crate psdm 0.1.0 on toolchain 722e1797249a965b6335aebd65d777f917e498f1
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate psdm 0.1.0
[INFO] finished tweaking crates.io crate psdm 0.1.0
[INFO] tweaked toml for crates.io crate psdm 0.1.0 written to /workspace/builds/worker-41/source/Cargo.toml
[INFO] crate crates.io crate psdm 0.1.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-41/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-41/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 714eb6a792ff01865e7b8a04469336a3836169a9928de1b7c2c1e8759c5d588f
[INFO] running `Command { std: "docker" "start" "-a" "714eb6a792ff01865e7b8a04469336a3836169a9928de1b7c2c1e8759c5d588f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "714eb6a792ff01865e7b8a04469336a3836169a9928de1b7c2c1e8759c5d588f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "714eb6a792ff01865e7b8a04469336a3836169a9928de1b7c2c1e8759c5d588f", kill_on_drop: false }`
[INFO] [stdout] 714eb6a792ff01865e7b8a04469336a3836169a9928de1b7c2c1e8759c5d588f
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-41/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-41/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] a22107355e30f5e179701a420f7539c9e324b8133f047a15501f4da5808c9e50
[INFO] running `Command { std: "docker" "start" "-a" "a22107355e30f5e179701a420f7539c9e324b8133f047a15501f4da5808c9e50", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]    Compiling proc-macro2 v1.0.32
[INFO] [stderr]    Compiling syn v1.0.81
[INFO] [stderr]    Compiling crc32fast v1.2.1
[INFO] [stderr]    Compiling adler v1.0.2
[INFO] [stderr]    Compiling unicode-segmentation v1.8.0
[INFO] [stderr]    Compiling regex-syntax v0.6.25
[INFO] [stderr]    Compiling anyhow v1.0.44
[INFO] [stderr]    Compiling number_prefix v0.4.0
[INFO] [stderr]    Compiling miniz_oxide v0.4.4
[INFO] [stderr]    Compiling num-traits v0.2.14
[INFO] [stderr]    Compiling indexmap v1.7.0
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling lzma-sys v0.1.17
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling matrixmultiply v0.3.1
[INFO] [stderr]    Compiling terminal_size v0.1.17
[INFO] [stderr]    Compiling clap v2.33.3
[INFO] [stderr]    Compiling console v0.15.0
[INFO] [stderr]    Compiling heck v0.3.3
[INFO] [stderr]    Compiling xz2 v0.1.6
[INFO] [stderr]    Compiling quote v1.0.10
[INFO] [stderr]    Compiling regex v1.5.4
[INFO] [stderr]    Compiling num-integer v0.1.44
[INFO] [stderr]    Compiling num-complex v0.4.0
[INFO] [stderr]    Compiling ndarray v0.15.3
[INFO] [stderr]    Compiling flate2 v1.0.22
[INFO] [stderr]    Compiling bzip2 v0.4.3
[INFO] [stderr]    Compiling indicatif v0.16.2
[INFO] [stderr]    Compiling env_logger v0.9.0
[INFO] [stderr]    Compiling noodles-bgzf v0.4.0
[INFO] [stderr]    Compiling noodles-sam v0.6.0
[INFO] [stderr]    Compiling noodles-core v0.2.3
[INFO] [stderr]    Compiling noodles-fasta v0.3.1
[INFO] [stderr]    Compiling thiserror-impl v1.0.30
[INFO] [stderr]    Compiling structopt-derive v0.4.18
[INFO] [stderr]    Compiling structopt v0.3.25
[INFO] [stderr]    Compiling thiserror v1.0.30
[INFO] [stderr]    Compiling bgzip v0.2.1
[INFO] [stderr]    Compiling niffler v2.3.2
[INFO] [stderr]    Compiling psdm v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 18.78s
[INFO] running `Command { std: "docker" "inspect" "a22107355e30f5e179701a420f7539c9e324b8133f047a15501f4da5808c9e50", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "a22107355e30f5e179701a420f7539c9e324b8133f047a15501f4da5808c9e50", kill_on_drop: false }`
[INFO] [stdout] a22107355e30f5e179701a420f7539c9e324b8133f047a15501f4da5808c9e50
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-41/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-41/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] f043ce95dfc05c7b4719936da21870a41cf4bf8b3f931a73be4bdd499122a8b5
[INFO] running `Command { std: "docker" "start" "-a" "f043ce95dfc05c7b4719936da21870a41cf4bf8b3f931a73be4bdd499122a8b5", kill_on_drop: false }`
[INFO] [stderr]    Compiling predicates-core v1.0.2
[INFO] [stderr]    Compiling termtree v0.2.3
[INFO] [stderr]    Compiling difflib v0.4.0
[INFO] [stderr]    Compiling bstr v0.2.17
[INFO] [stderr]    Compiling wait-timeout v0.2.0
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling predicates-tree v1.0.4
[INFO] [stderr]    Compiling predicates v2.0.3
[INFO] [stderr]    Compiling rand v0.8.4
[INFO] [stderr]    Compiling assert_cmd v2.0.2
[INFO] [stderr]    Compiling tempfile v3.2.0
[INFO] [stderr]    Compiling psdm v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 4.48s
[INFO] running `Command { std: "docker" "inspect" "f043ce95dfc05c7b4719936da21870a41cf4bf8b3f931a73be4bdd499122a8b5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f043ce95dfc05c7b4719936da21870a41cf4bf8b3f931a73be4bdd499122a8b5", kill_on_drop: false }`
[INFO] [stdout] f043ce95dfc05c7b4719936da21870a41cf4bf8b3f931a73be4bdd499122a8b5
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-41/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-41/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 06a89dab4e214f392f8d80448d62319e3fea7b640ec881af50f859e29d513d32
[INFO] running `Command { std: "docker" "start" "-a" "06a89dab4e214f392f8d80448d62319e3fea7b640ec881af50f859e29d513d32", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.47s
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/psdm-a048eaf59b0b1477)
[INFO] [stdout] 
[INFO] [stdout] running 15 tests
[INFO] [stdout] test tests::alignments_all_have_same_length ... ok
[INFO] [stdout] test tests::alignments_do_not_all_have_same_length ... ok
[INFO] [stdout] test tests::alignments_do_not_have_same_length_as_starting_seqlen ... ok
[INFO] [stdout] test tests::alignments_sorted_by_id ... ok
[INFO] [stdout] test tests::argsort_on_empty ... ok
[INFO] [stdout] test tests::argsort ... ok
[INFO] [stdout] test tests::sort_by_index ... ok
[INFO] [stdout] test tests::transform_ignore_case ... ok
[INFO] [stdout] test tests::transform_ignore_chars_case_insensitive ... ok
[INFO] [stdout] test tests::transform_ignore_chars ... ok
[INFO] [stdout] test tests::argsort_with_str ... ok
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/psdm-ad25052468d13bdf)
[INFO] [stdout] test tests::transform_ignore_chars_case_sensitive ... ok
[INFO] [stdout] test tests::transform_preserve_case ... ok
[INFO] [stdout] test tests::test_hamming_distance ... ok
[INFO] [stdout] test tests::parse_chars ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 15 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 2 tests
[INFO] [stdout] test tests::check_path_exists_it_doesnt ... ok
[INFO] [stdout] test tests::check_path_it_does ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 2 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/main.rs (/opt/rustwide/target/debug/deps/main-ec199b7525ccbbe5)
[INFO] [stdout] 
[INFO] [stdout] running 15 tests
[INFO] [stdout] test inter_alignment_in_long_form_sorted ... ok
[INFO] [stdout] test inter_alignment_with_tab_delim ... ok
[INFO] [stdout] test intra_alignment_with_defaults_long_form ... ok
[INFO] [stdout] test input_file_does_not_exist ... ok
[INFO] [stdout] test intra_alignment_with_defaults_long_form_sorted ... ok
[INFO] [stdout] test alignment_is_not_fasta ... ok
[INFO] [stdout] test more_than_two_input_files_fails ... ok
[INFO] [stdout] test intra_alignment_with_use_case_ignore_characters ... ok
[INFO] [stdout] test intra_alignment_with_ignore_case_ignore_characters_sorted ... ok
[INFO] [stdout] test alignment_files_do_not_have_same_length ... ok
[INFO] [stdout] test intra_alignment_with_defaults ... ok
[INFO] [stdout] test intra_alignment_with_ignore_case_ignore_no_characters ... ok
[INFO] [stdout] test intra_alignment_with_ignore_case_ignore_characters ... ok
[INFO] [stdout] test alignment_seqs_do_not_have_same_length ... ok
[INFO] [stderr]    Doc-tests psdm
[INFO] [stdout] test trying_to_create_output_in_nonexistent_dir ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 15 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.17s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "06a89dab4e214f392f8d80448d62319e3fea7b640ec881af50f859e29d513d32", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "06a89dab4e214f392f8d80448d62319e3fea7b640ec881af50f859e29d513d32", kill_on_drop: false }`
[INFO] [stdout] 06a89dab4e214f392f8d80448d62319e3fea7b640ec881af50f859e29d513d32