[INFO] fetching crate msbwt2 0.2.0... [INFO] testing msbwt2-0.2.0 against try#722e1797249a965b6335aebd65d777f917e498f1 for pr-91031 [INFO] extracting crate msbwt2 0.2.0 into /workspace/builds/worker-72/source [INFO] validating manifest of crates.io crate msbwt2 0.2.0 on toolchain 722e1797249a965b6335aebd65d777f917e498f1 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate msbwt2 0.2.0 [INFO] finished tweaking crates.io crate msbwt2 0.2.0 [INFO] tweaked toml for crates.io crate msbwt2 0.2.0 written to /workspace/builds/worker-72/source/Cargo.toml [INFO] crate crates.io crate msbwt2 0.2.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded exitcode v1.1.2 [INFO] [stderr] Downloaded needletail v0.4.1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-72/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-72/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] a6a38a3a5c7fc92feba07f96ded8c46a265be57cf23b3aad7155c572e8ca6d1c [INFO] running `Command { std: "docker" "start" "-a" "a6a38a3a5c7fc92feba07f96ded8c46a265be57cf23b3aad7155c572e8ca6d1c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "a6a38a3a5c7fc92feba07f96ded8c46a265be57cf23b3aad7155c572e8ca6d1c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a6a38a3a5c7fc92feba07f96ded8c46a265be57cf23b3aad7155c572e8ca6d1c", kill_on_drop: false }` [INFO] [stdout] a6a38a3a5c7fc92feba07f96ded8c46a265be57cf23b3aad7155c572e8ca6d1c [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-72/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-72/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 4d2afc8a750f0f10b877064b2b5add5d3e39240dae3931df7e92aef65906c5a6 [INFO] running `Command { std: "docker" "start" "-a" "4d2afc8a750f0f10b877064b2b5add5d3e39240dae3931df7e92aef65906c5a6", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling libc v0.2.94 [INFO] [stderr] Compiling pkg-config v0.3.19 [INFO] [stderr] Compiling cc v1.0.70 [INFO] [stderr] Compiling memchr v2.4.0 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling crc32fast v1.2.1 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling log v0.4.14 [INFO] [stderr] Compiling ryu v1.0.5 [INFO] [stderr] Compiling regex-syntax v0.6.25 [INFO] [stderr] Compiling safemem v0.3.3 [INFO] [stderr] Compiling unicode-width v0.1.8 [INFO] [stderr] Compiling serde_json v1.0.67 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling itoa v0.4.8 [INFO] [stderr] Compiling termcolor v1.1.2 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling humantime v2.1.0 [INFO] [stderr] Compiling bytecount v0.6.2 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling exitcode v1.1.2 [INFO] [stderr] Compiling arrayvec v0.7.1 [INFO] [stderr] Compiling miniz_oxide v0.4.4 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling aho-corasick v0.7.18 [INFO] [stderr] Compiling buf_redux v0.8.4 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling flate2 v1.0.22 [INFO] [stderr] Compiling lzma-sys v0.1.17 [INFO] [stderr] Compiling bzip2-sys v0.1.11+1.0.8 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling regex v1.5.4 [INFO] [stderr] Compiling env_logger v0.9.0 [INFO] [stderr] Compiling xz2 v0.1.6 [INFO] [stderr] Compiling bzip2 v0.4.3 [INFO] [stderr] Compiling needletail v0.4.1 [INFO] [stderr] Compiling msbwt2 v0.2.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 14.67s [INFO] running `Command { std: "docker" "inspect" "4d2afc8a750f0f10b877064b2b5add5d3e39240dae3931df7e92aef65906c5a6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4d2afc8a750f0f10b877064b2b5add5d3e39240dae3931df7e92aef65906c5a6", kill_on_drop: false }` [INFO] [stdout] 4d2afc8a750f0f10b877064b2b5add5d3e39240dae3931df7e92aef65906c5a6 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-72/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-72/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 505f343e98dd3961fafdb3d7dee06cb97b931d6ad5d5fb2fc875eeef53868a45 [INFO] running `Command { std: "docker" "start" "-a" "505f343e98dd3961fafdb3d7dee06cb97b931d6ad5d5fb2fc875eeef53868a45", kill_on_drop: false }` [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling semver v1.0.4 [INFO] [stderr] Compiling crossbeam-utils v0.8.5 [INFO] [stderr] Compiling proc-macro2 v1.0.29 [INFO] [stderr] Compiling crossbeam-epoch v0.9.5 [INFO] [stderr] Compiling rayon-core v1.9.1 [INFO] [stderr] Compiling scopeguard v1.1.0 [INFO] [stderr] Compiling ppv-lite86 v0.2.10 [INFO] [stderr] Compiling getrandom v0.1.16 [INFO] [stderr] Compiling unicode-xid v0.2.2 [INFO] [stderr] Compiling syn v1.0.76 [INFO] [stderr] Compiling either v1.6.1 [INFO] [stderr] Compiling regex-automata v0.1.10 [INFO] [stderr] Compiling plotters-backend v0.3.2 [INFO] [stderr] Compiling serde_derive v1.0.130 [INFO] [stderr] Compiling half v1.7.1 [INFO] [stderr] Compiling same-file v1.0.6 [INFO] [stderr] Compiling remove_dir_all v0.5.3 [INFO] [stderr] Compiling oorandom v11.1.3 [INFO] [stderr] Compiling memoffset v0.6.4 [INFO] [stderr] Compiling rayon v1.5.1 [INFO] [stderr] Compiling getrandom v0.2.3 [INFO] [stderr] Compiling num_cpus v1.13.0 [INFO] [stderr] Compiling csv-core v0.1.10 [INFO] [stderr] Compiling tinytemplate v1.2.1 [INFO] [stderr] Compiling walkdir v2.3.2 [INFO] [stderr] Compiling itertools v0.10.1 [INFO] [stderr] Compiling rand_core v0.6.3 [INFO] [stderr] Compiling serde_cbor v0.11.2 [INFO] [stderr] Compiling bstr v0.2.16 [INFO] [stderr] Compiling plotters-svg v0.3.1 [INFO] [stderr] Compiling plotters v0.3.1 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling rand_core v0.5.1 [INFO] [stderr] Compiling rand_chacha v0.2.2 [INFO] [stderr] Compiling rustc_version v0.4.0 [INFO] [stderr] Compiling rand v0.8.4 [INFO] [stderr] Compiling crossbeam-channel v0.5.1 [INFO] [stderr] Compiling quote v1.0.9 [INFO] [stderr] Compiling rand v0.7.3 [INFO] [stderr] Compiling csv v1.1.6 [INFO] [stderr] Compiling crossbeam-deque v0.8.1 [INFO] [stderr] Compiling cast v0.2.7 [INFO] [stderr] Compiling tempfile v3.2.0 [INFO] [stderr] Compiling criterion-plot v0.4.4 [INFO] [stderr] Compiling criterion v0.3.5 [INFO] [stderr] Compiling msbwt2 v0.2.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 27.82s [INFO] running `Command { std: "docker" "inspect" "505f343e98dd3961fafdb3d7dee06cb97b931d6ad5d5fb2fc875eeef53868a45", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "505f343e98dd3961fafdb3d7dee06cb97b931d6ad5d5fb2fc875eeef53868a45", kill_on_drop: false }` [INFO] [stdout] 505f343e98dd3961fafdb3d7dee06cb97b931d6ad5d5fb2fc875eeef53868a45 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-72/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-72/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 8995f56442084bcdf2b7699222b246a0a7e115e45f1b594c7cdb098997256e4f [INFO] running `Command { std: "docker" "start" "-a" "8995f56442084bcdf2b7699222b246a0a7e115e45f1b594c7cdb098997256e4f", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.60s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/msbwt2-2ca34c0384aa0cd2) [INFO] [stdout] [INFO] [stdout] running 44 tests [INFO] [stdout] test bwt_converter::tests::test_newline ... ok [INFO] [stdout] test bwt_converter::tests::test_convert_to_vec ... ok [INFO] [stdout] test bwt_converter::tests::test_bwt_conversion ... ok [INFO] [stdout] test bwt_util::tests::test_basic ... ok [INFO] [stdout] test bwt_util::tests::test_cycle_breaker ... ok [INFO] [stdout] test bwt_util::tests::test_diff_len ... ok [INFO] [stdout] test dynamic_bwt::tests::test_constrain_range ... ok [INFO] [stdout] test dynamic_bwt::tests::test_init ... ok [INFO] [stdout] test dynamic_bwt::tests::test_count_kmer ... ok [INFO] [stdout] test dynamic_bwt::tests::test_load_and_add ... ok [INFO] [stdout] test dynamic_bwt::tests::test_create_from_fastx ... ok [INFO] [stdout] test dynamic_bwt::tests::test_load_dynamicbwt_from_vec ... ok [INFO] [stdout] test dynamic_bwt::tests::test_multi_length ... ok [INFO] [stdout] test dynamic_bwt::tests::test_multi_string_unsorted ... ok [INFO] [stdout] test dynamic_bwt::tests::test_multi_string_sorted ... ok [INFO] [stdout] test bwt_converter::tests::test_save_bwt_numpy ... ok [INFO] [stdout] test dynamic_bwt::tests::test_run_iter ... ok [INFO] [stdout] test bwt_converter::tests::test_compression ... ok [INFO] [stdout] test bwt_converter::tests::test_save_bwt_runs_numpy ... ok [INFO] [stdout] test dynamic_bwt::tests::test_single_string ... ok [INFO] [stdout] test dynamic_bwt::tests::test_load_dynamicbwt_from_npy ... ok [INFO] [stdout] test rle_bplus_tree::tests::test_failure_case_001 ... ok [INFO] [stdout] test rle_bplus_tree::tests::test_failure_case_002 ... ok [INFO] [stdout] test rle_bplus_tree::tests::test_init ... ok [INFO] [stdout] test rle_bplus_tree::tests::test_failure_case_003 ... ok [INFO] [stdout] test rle_bplus_tree::tests::test_simple_inserts ... ok [INFO] [stdout] test rle_bwt::tests::test_fmindex ... ok [INFO] [stdout] test rle_bwt::tests::test_count_kmer ... ok [INFO] [stdout] test rle_bwt::tests::test_constrain_range ... ok [INFO] [stdout] test run_block_av_flat::tests::test_block_failure_001 ... ok [INFO] [stdout] test run_block_av_flat::tests::test_block_splits ... ok [INFO] [stdout] test run_block_av_flat::tests::test_increment_run ... ok [INFO] [stdout] test run_block_av_flat::tests::test_init ... ok [INFO] [stdout] test run_block_av_flat::tests::test_insert_splitting ... ok [INFO] [stdout] test run_block_av_flat::tests::test_insert ... ok [INFO] [stdout] test run_block_av_flat::tests::test_to_vec ... ok [INFO] [stdout] test string_util::tests::test_convert_stoi ... ok [INFO] [stdout] test string_util::tests::test_convert_itos ... ok [INFO] [stdout] test string_util::tests::test_reverse_complement_i ... ok [INFO] [stdout] test string_util::tests::test_simple_index ... ok [INFO] [stdout] test rle_bwt::tests::test_load_rlebwt_from_npy ... ok [INFO] [stdout] test dynamic_bwt::tests::test_sampled_bwt ... ok [INFO] [stdout] test rle_bplus_tree::tests::test_run_iter ... ok [INFO] [stdout] test rle_bplus_tree::tests::test_10krandom_insert ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 44 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 37.77s [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/msbwt2_build-4805afe9aaf8ba32) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/msbwt2_convert-86981a927f9f62db) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Doc-tests msbwt2 [INFO] [stdout] [INFO] [stdout] running 36 tests [INFO] [stdout] test src/dynamic_bwt.rs - dynamic_bwt::DynamicBWT::iter (line 399) ... FAILED [INFO] [stdout] test src/lib.rs - (line 30) ... FAILED [INFO] [stdout] test src/dynamic_bwt.rs - dynamic_bwt::create_from_fastx (line 439) ... FAILED [INFO] [stdout] test src/dynamic_bwt.rs - dynamic_bwt::DynamicBWT::run_iter (line 419) ... FAILED [INFO] [stdout] test src/bwt_converter.rs - bwt_converter::save_bwt_runs_numpy (line 139) ... FAILED [INFO] [stdout] test src/rle_bplus_tree.rs - rle_bplus_tree::RLEBPlusTree::run_iter (line 409) ... FAILED [INFO] [stdout] test src/dynamic_bwt.rs - dynamic_bwt::DynamicBWT::to_vec (line 385) ... FAILED [INFO] [stderr] error: test failed, to rerun pass '--doc' [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `rustdoc --edition=2018 --crate-type lib --crate-name msbwt2 --test /opt/rustwide/workdir/src/lib.rs -L dependency=/opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps -L native=/opt/rustwide/target/debug/build/bzip2-sys-5fe66aa505a6ccdc/out/lib -L native=/usr/lib/x86_64-linux-gnu --extern arrayvec=/opt/rustwide/target/debug/deps/libarrayvec-c15123a27c73bc78.rlib --extern clap=/opt/rustwide/target/debug/deps/libclap-5c21a5a6d3c6a478.rlib --extern criterion=/opt/rustwide/target/debug/deps/libcriterion-0b681d40d048ec06.rlib --extern env_logger=/opt/rustwide/target/debug/deps/libenv_logger-411301f0de232e3b.rlib --extern exitcode=/opt/rustwide/target/debug/deps/libexitcode-beece35230e01222.rlib --extern log=/opt/rustwide/target/debug/deps/liblog-41607b4997ff699e.rlib --extern msbwt2=/opt/rustwide/target/debug/deps/libmsbwt2-e95e2b22032044f7.rlib --extern needletail=/opt/rustwide/target/debug/deps/libneedletail-a4449c15f1206cb1.rlib --extern rand=/opt/rustwide/target/debug/deps/librand-e3ae2f2c2eaf6a30.rlib --extern rand_core=/opt/rustwide/target/debug/deps/librand_core-964376f1cdb8be20.rlib --extern serde_json=/opt/rustwide/target/debug/deps/libserde_json-54ec2d2242f42c43.rlib --extern tempfile=/opt/rustwide/target/debug/deps/libtempfile-1c085aaf333a94b4.rlib -C embed-bitcode=no --error-format human` (signal: 9, SIGKILL: kill) [INFO] running `Command { std: "docker" "inspect" "8995f56442084bcdf2b7699222b246a0a7e115e45f1b594c7cdb098997256e4f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "8995f56442084bcdf2b7699222b246a0a7e115e45f1b594c7cdb098997256e4f", kill_on_drop: false }` [INFO] [stdout] 8995f56442084bcdf2b7699222b246a0a7e115e45f1b594c7cdb098997256e4f