[INFO] fetching crate genome-graph 0.4.9... [INFO] testing genome-graph-0.4.9 against try#722e1797249a965b6335aebd65d777f917e498f1 for pr-91031 [INFO] extracting crate genome-graph 0.4.9 into /workspace/builds/worker-12/source [INFO] validating manifest of crates.io crate genome-graph 0.4.9 on toolchain 722e1797249a965b6335aebd65d777f917e498f1 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate genome-graph 0.4.9 [INFO] finished tweaking crates.io crate genome-graph 0.4.9 [INFO] tweaked toml for crates.io crate genome-graph 0.4.9 written to /workspace/builds/worker-12/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded funty v1.2.0 [INFO] [stderr] Downloaded traitsequence v0.4.2 [INFO] [stderr] Downloaded derive-new v0.5.9 [INFO] [stderr] Downloaded radium v0.6.2 [INFO] [stderr] Downloaded statrs v0.15.0 [INFO] [stderr] Downloaded bio-types v0.12.1 [INFO] [stderr] Downloaded triple_accel v0.4.0 [INFO] [stderr] Downloaded opaque_typedef v0.0.5 [INFO] [stderr] Downloaded strum v0.15.0 [INFO] [stderr] Downloaded opaque_typedef_macros v0.0.5 [INFO] [stderr] Downloaded traitgraph v0.4.10 [INFO] [stderr] Downloaded strum_macros v0.15.0 [INFO] [stderr] Downloaded rand_distr v0.4.2 [INFO] [stderr] Downloaded bitvector v0.1.5 [INFO] [stderr] Downloaded wyz v0.4.0 [INFO] [stderr] Downloaded nalgebra v0.27.1 [INFO] [stderr] Downloaded bitvec v0.22.3 [INFO] [stderr] Downloaded compact-genome v0.4.10 [INFO] [stderr] Downloaded ndarray v0.15.3 [INFO] [stderr] Downloaded bigraph v0.4.5 [INFO] [stderr] Downloaded bio v0.37.1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 8fb7d2916bce809d47cf7b08d7b62c13a09a16597fe7fbe45dcbf1fbbba973c9 [INFO] running `Command { std: "docker" "start" "-a" "8fb7d2916bce809d47cf7b08d7b62c13a09a16597fe7fbe45dcbf1fbbba973c9", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "8fb7d2916bce809d47cf7b08d7b62c13a09a16597fe7fbe45dcbf1fbbba973c9", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "8fb7d2916bce809d47cf7b08d7b62c13a09a16597fe7fbe45dcbf1fbbba973c9", kill_on_drop: false }` [INFO] [stdout] 8fb7d2916bce809d47cf7b08d7b62c13a09a16597fe7fbe45dcbf1fbbba973c9 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] d60867cdb2dd4b459c457e7e4d199e1b3e8a100029f3356006aba3edab0652ed [INFO] running `Command { std: "docker" "start" "-a" "d60867cdb2dd4b459c457e7e4d199e1b3e8a100029f3356006aba3edab0652ed", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling proc-macro2 v1.0.32 [INFO] [stderr] Compiling unicode-xid v0.2.2 [INFO] [stderr] Compiling syn v1.0.81 [INFO] [stderr] Compiling libc v0.2.108 [INFO] [stderr] Compiling libm v0.2.1 [INFO] [stderr] Compiling version_check v0.9.3 [INFO] [stderr] Compiling ppv-lite86 v0.2.15 [INFO] [stderr] Compiling serde_derive v1.0.130 [INFO] [stderr] Compiling unicode-segmentation v1.8.0 [INFO] [stderr] Compiling serde v1.0.130 [INFO] [stderr] Compiling getrandom v0.1.16 [INFO] [stderr] Compiling rustversion v1.0.5 [INFO] [stderr] Compiling rawpointer v0.2.1 [INFO] [stderr] Compiling syn v0.15.44 [INFO] [stderr] Compiling typenum v1.14.0 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling either v1.6.1 [INFO] [stderr] Compiling ryu v1.0.5 [INFO] [stderr] Compiling paste v1.0.6 [INFO] [stderr] Compiling radium v0.6.2 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling adler v1.0.2 [INFO] [stderr] Compiling regex-automata v0.1.10 [INFO] [stderr] Compiling anyhow v1.0.47 [INFO] [stderr] Compiling gimli v0.26.1 [INFO] [stderr] Compiling traitsequence v0.4.2 [INFO] [stderr] Compiling ref-cast v1.0.6 [INFO] [stderr] Compiling tap v1.0.1 [INFO] [stderr] Compiling bitvector v0.1.5 [INFO] [stderr] Compiling rustc-demangle v0.1.21 [INFO] [stderr] Compiling strum v0.15.0 [INFO] [stderr] Compiling byteorder v1.4.3 [INFO] [stderr] Compiling funty v1.2.0 [INFO] [stderr] Compiling bio v0.37.1 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling opaque_typedef v0.0.5 [INFO] [stderr] Compiling fnv v1.0.7 [INFO] [stderr] Compiling strum v0.21.0 [INFO] [stderr] Compiling bytecount v0.6.2 [INFO] [stderr] Compiling triple_accel v0.4.0 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling indexmap v1.7.0 [INFO] [stderr] Compiling num-rational v0.4.0 [INFO] [stderr] Compiling miniz_oxide v0.4.4 [INFO] [stderr] Compiling matrixmultiply v0.3.1 [INFO] [stderr] Compiling backtrace v0.3.63 [INFO] [stderr] Compiling itertools v0.9.0 [INFO] [stderr] Compiling itertools v0.10.1 [INFO] [stderr] Compiling csv-core v0.1.10 [INFO] [stderr] Compiling object v0.27.1 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling heck v0.3.3 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.4 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Compiling error-chain v0.12.4 [INFO] [stderr] Compiling wyz v0.4.0 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling bitvec v0.22.3 [INFO] [stderr] Compiling quote v1.0.10 [INFO] [stderr] Compiling getrandom v0.2.3 [INFO] [stderr] Compiling rand_core v0.6.3 [INFO] [stderr] Compiling rand_core v0.5.1 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling rand_chacha v0.2.2 [INFO] [stderr] Compiling petgraph v0.5.1 [INFO] [stderr] Compiling rand v0.7.3 [INFO] [stderr] Compiling rand v0.8.4 [INFO] [stderr] Compiling num-complex v0.4.0 [INFO] [stderr] Compiling approx v0.5.0 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling ordered-float v1.1.1 [INFO] [stderr] Compiling simba v0.5.1 [INFO] [stderr] Compiling ndarray v0.15.3 [INFO] [stderr] Compiling rand_distr v0.4.2 [INFO] [stderr] Compiling addr2line v0.17.0 [INFO] [stderr] Compiling traitgraph v0.4.10 [INFO] [stderr] Compiling strum_macros v0.15.0 [INFO] [stderr] Compiling nalgebra-macros v0.1.0 [INFO] [stderr] Compiling thiserror-impl v1.0.30 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Compiling enum-map-derive v0.6.0 [INFO] [stderr] Compiling ref-cast-impl v1.0.6 [INFO] [stderr] Compiling strum_macros v0.23.0 [INFO] [stderr] Compiling strum_macros v0.21.1 [INFO] [stderr] Compiling getset v0.1.1 [INFO] [stderr] Compiling enum-map v1.1.1 [INFO] [stderr] Compiling compact-genome v0.4.10 [INFO] [stderr] Compiling opaque_typedef_macros v0.0.5 [INFO] [stderr] Compiling thiserror v1.0.30 [INFO] [stderr] Compiling bio-types v0.12.1 [INFO] [stderr] Compiling nalgebra v0.27.1 [INFO] [stderr] Compiling bigraph v0.4.5 [INFO] [stderr] Compiling bstr v0.2.17 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling multimap v0.8.3 [INFO] [stderr] Compiling csv v1.1.6 [INFO] [stderr] Compiling statrs v0.15.0 [INFO] [stderr] Compiling genome-graph v0.4.9 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1m 13s [INFO] running `Command { std: "docker" "inspect" "d60867cdb2dd4b459c457e7e4d199e1b3e8a100029f3356006aba3edab0652ed", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d60867cdb2dd4b459c457e7e4d199e1b3e8a100029f3356006aba3edab0652ed", kill_on_drop: false }` [INFO] [stdout] d60867cdb2dd4b459c457e7e4d199e1b3e8a100029f3356006aba3edab0652ed [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 6acd02548566b43d558ad4a9e90d0240f3a5bc2a16d982cc0fd6e229b9411dd1 [INFO] running `Command { std: "docker" "start" "-a" "6acd02548566b43d558ad4a9e90d0240f3a5bc2a16d982cc0fd6e229b9411dd1", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling genome-graph v0.4.9 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 1m 04s [INFO] running `Command { std: "docker" "inspect" "6acd02548566b43d558ad4a9e90d0240f3a5bc2a16d982cc0fd6e229b9411dd1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "6acd02548566b43d558ad4a9e90d0240f3a5bc2a16d982cc0fd6e229b9411dd1", kill_on_drop: false }` [INFO] [stdout] 6acd02548566b43d558ad4a9e90d0240f3a5bc2a16d982cc0fd6e229b9411dd1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] d3cd8807c30c36d2ef3f92a4a888f774be605a9012d34e4abc570bbb67629155 [INFO] running `Command { std: "docker" "start" "-a" "d3cd8807c30c36d2ef3f92a4a888f774be605a9012d34e4abc570bbb67629155", kill_on_drop: false }` [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.21s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/genome_graph-154c29664cb26336) [INFO] [stdout] [INFO] [stdout] running 10 tests [INFO] [stdout] test io::bcalm2::tests::test_edge_read_write ... ok [INFO] [stdout] test io::bcalm2::tests::test_edge_read_write_forward_merge ... ok [INFO] [stdout] test io::bcalm2::tests::test_edge_read_write_minus_plus_loop ... ok [INFO] [stdout] test io::bcalm2::tests::test_edge_read_write_multigraph ... ok [INFO] [stdout] test io::bcalm2::tests::test_edge_read_write_plus_minus_loop ... ok [INFO] [stdout] test io::bcalm2::tests::test_edge_read_write_all_loops ... ok [INFO] [stdout] test io::bcalm2::tests::test_edge_read_write_self_loops ... ok [INFO] [stdout] test io::bcalm2::tests::test_edge_read_write_plus_minus_and_minus_plus_loop ... ok [INFO] [stdout] test io::gfa::tests::test_read_gfa_as_edge_centric_bigraph_simple ... ok [INFO] [stdout] test io::bcalm2::tests::test_node_read_write ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 10 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stderr] Doc-tests genome-graph [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "d3cd8807c30c36d2ef3f92a4a888f774be605a9012d34e4abc570bbb67629155", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d3cd8807c30c36d2ef3f92a4a888f774be605a9012d34e4abc570bbb67629155", kill_on_drop: false }` [INFO] [stdout] d3cd8807c30c36d2ef3f92a4a888f774be605a9012d34e4abc570bbb67629155