[INFO] fetching crate d4-hts 0.2.18... [INFO] testing d4-hts-0.2.18 against try#722e1797249a965b6335aebd65d777f917e498f1 for pr-91031 [INFO] extracting crate d4-hts 0.2.18 into /workspace/builds/worker-1/source [INFO] validating manifest of crates.io crate d4-hts 0.2.18 on toolchain 722e1797249a965b6335aebd65d777f917e498f1 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate d4-hts 0.2.18 [INFO] finished tweaking crates.io crate d4-hts 0.2.18 [INFO] tweaked toml for crates.io crate d4-hts 0.2.18 written to /workspace/builds/worker-1/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 9720c66112d1aa3d2b044a611a0241adc41cb4b86ba1b5500518fcdc515aaad8 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "9720c66112d1aa3d2b044a611a0241adc41cb4b86ba1b5500518fcdc515aaad8", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "9720c66112d1aa3d2b044a611a0241adc41cb4b86ba1b5500518fcdc515aaad8", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "9720c66112d1aa3d2b044a611a0241adc41cb4b86ba1b5500518fcdc515aaad8", kill_on_drop: false }` [INFO] [stdout] 9720c66112d1aa3d2b044a611a0241adc41cb4b86ba1b5500518fcdc515aaad8 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] a8124d7fbb1f3213cde1f3808c92995aa6a0fac28afd149a607505172c5c867c [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "a8124d7fbb1f3213cde1f3808c92995aa6a0fac28afd149a607505172c5c867c", kill_on_drop: false }` [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Compiling proc-macro2 v1.0.32 [INFO] [stderr] Compiling unicode-xid v0.2.2 [INFO] [stderr] Compiling bitflags v1.3.2 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling bindgen v0.55.1 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling nom v5.1.2 [INFO] [stderr] Compiling libloading v0.7.2 [INFO] [stderr] Compiling regex v1.5.4 [INFO] [stderr] Compiling which v3.1.1 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling clang-sys v1.3.0 [INFO] [stderr] Compiling quote v1.0.10 [INFO] [stderr] Compiling env_logger v0.7.1 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Compiling d4-hts v0.2.18 (/opt/rustwide/workdir) [INFO] [stderr] error: failed to run custom build command for `d4-hts v0.2.18 (/opt/rustwide/workdir)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/d4-hts-37978a127be96dac/build-script-build` (exit status: 101) [INFO] [stderr] --- stderr [INFO] [stderr] + pushd /opt/rustwide/target/debug/build/d4-hts-3a576472198623dc/out [INFO] [stderr] + HTSLIB_VERSION=1.11 [INFO] [stderr] + rm -rf /opt/rustwide/target/debug/build/d4-hts-3a576472198623dc/out/htslib [INFO] [stderr] + git clone -b 1.11 https://github.com/samtools/htslib.git [INFO] [stderr] Cloning into 'htslib'... [INFO] [stderr] fatal: unable to access 'https://github.com/samtools/htslib.git/': Could not resolve host: github.com [INFO] [stderr] thread 'main' panicked at 'assertion failed: Command::new(\"bash\").args(&[\"build_htslib.sh\",\n &version]).stdout(std::process::Stdio::null()).spawn().expect(\"Unable to build htslib\").wait().unwrap().success()', build.rs:33:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55af38e85bbc - std::backtrace_rs::backtrace::libunwind::trace::h7630ba4cba718aa0 [INFO] [stderr] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/std/src/../../backtrace/src/backtrace/libunwind.rs:93:5 [INFO] [stderr] 1: 0x55af38e85bbc - std::backtrace_rs::backtrace::trace_unsynchronized::he7498e79c157f5ac [INFO] [stderr] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55af38e85bbc - std::sys_common::backtrace::_print_fmt::hdaebadaee17bca49 [INFO] [stderr] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x55af38e85bbc - ::fmt::h82b0e3aaf8a96140 [INFO] [stderr] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x55af38eaaa4c - core::fmt::write::h72801a82c94e6ff1 [INFO] [stderr] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/core/src/fmt/mod.rs:1149:17 [INFO] [stderr] 5: 0x55af38e81e05 - std::io::Write::write_fmt::hc2da38dc44811df8 [INFO] [stderr] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/std/src/io/mod.rs:1697:15 [INFO] [stderr] 6: 0x55af38e87610 - std::sys_common::backtrace::_print::h1c9a1d19c48821c1 [INFO] [stderr] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x55af38e87610 - std::sys_common::backtrace::print::h7ce8802039fa9d0e [INFO] [stderr] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x55af38e87610 - std::panicking::default_hook::{{closure}}::hb2a74a8c1499c326 [INFO] [stderr] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/std/src/panicking.rs:211:50 [INFO] [stderr] 9: 0x55af38e871bb - std::panicking::default_hook::hf4f180b00076f2b2 [INFO] [stderr] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/std/src/panicking.rs:228:9 [INFO] [stderr] 10: 0x55af38e87cc4 - std::panicking::rust_panic_with_hook::he85ce8435493b711 [INFO] [stderr] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/std/src/panicking.rs:606:17 [INFO] [stderr] 11: 0x55af38e87772 - std::panicking::begin_panic_handler::{{closure}}::h31e15f69e6235bd2 [INFO] [stderr] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/std/src/panicking.rs:500:13 [INFO] [stderr] 12: 0x55af38e86074 - std::sys_common::backtrace::__rust_end_short_backtrace::hfce2fadb61aaa3ae [INFO] [stderr] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/std/src/sys_common/backtrace.rs:139:18 [INFO] [stderr] 13: 0x55af38e87709 - rust_begin_unwind [INFO] [stderr] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/std/src/panicking.rs:498:5 [INFO] [stderr] 14: 0x55af3894e721 - core::panicking::panic_fmt::h7b8580d81fcbbacd [INFO] [stderr] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/core/src/panicking.rs:107:14 [INFO] [stderr] 15: 0x55af3894e66d - core::panicking::panic::h50b51d19800453c0 [INFO] [stderr] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/core/src/panicking.rs:48:5 [INFO] [stderr] 16: 0x55af3894f7ca - build_script_build::build_own_htslib::ha5154d2579105a0f [INFO] [stderr] at /opt/rustwide/workdir/build.rs:33:5 [INFO] [stderr] 17: 0x55af3894fc1e - build_script_build::main::h0f076011dfc5babd [INFO] [stderr] at /opt/rustwide/workdir/build.rs:65:9 [INFO] [stderr] 18: 0x55af389513ab - core::ops::function::FnOnce::call_once::h9d758cbb6dc99463 [INFO] [stderr] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 19: 0x55af3895072e - std::sys_common::backtrace::__rust_begin_short_backtrace::hd9eb2649511fca3a [INFO] [stderr] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/std/src/sys_common/backtrace.rs:123:18 [INFO] [stderr] 20: 0x55af38951281 - std::rt::lang_start::{{closure}}::h8c64f6ac19d6f3e3 [INFO] [stderr] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/std/src/rt.rs:145:18 [INFO] [stderr] 21: 0x55af38e85401 - core::ops::function::impls:: for &F>::call_once::h0e73392810ecd318 [INFO] [stderr] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 22: 0x55af38e85401 - std::panicking::try::do_call::h12dcb4a4f352a507 [INFO] [stderr] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/std/src/panicking.rs:406:40 [INFO] [stderr] 23: 0x55af38e85401 - std::panicking::try::h0d978c76ab4a3863 [INFO] [stderr] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/std/src/panicking.rs:370:19 [INFO] [stderr] 24: 0x55af38e85401 - std::panic::catch_unwind::hab40227675186980 [INFO] [stderr] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/std/src/panic.rs:133:14 [INFO] [stderr] 25: 0x55af38e85401 - std::rt::lang_start_internal::{{closure}}::hc34786299e7d2cf7 [INFO] [stderr] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/std/src/rt.rs:128:48 [INFO] [stderr] 26: 0x55af38e85401 - std::panicking::try::do_call::h38e7a9128f21d387 [INFO] [stderr] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/std/src/panicking.rs:406:40 [INFO] [stderr] 27: 0x55af38e85401 - std::panicking::try::h32d4e72fd8922bce [INFO] [stderr] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/std/src/panicking.rs:370:19 [INFO] [stderr] 28: 0x55af38e85401 - std::panic::catch_unwind::h9a345671d889d41f [INFO] [stderr] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/std/src/panic.rs:133:14 [INFO] [stderr] 29: 0x55af38e85401 - std::rt::lang_start_internal::h9e691a4f557eb2a3 [INFO] [stderr] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/std/src/rt.rs:128:20 [INFO] [stderr] 30: 0x55af38951250 - std::rt::lang_start::h2bd13f1db1ba3102 [INFO] [stderr] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/std/src/rt.rs:144:17 [INFO] [stderr] 31: 0x55af3895024c - main [INFO] [stderr] 32: 0x7f5a60bc90b3 - __libc_start_main [INFO] [stderr] 33: 0x55af3894eede - _start [INFO] [stderr] 34: 0x0 - [INFO] running `Command { std: "docker" "inspect" "a8124d7fbb1f3213cde1f3808c92995aa6a0fac28afd149a607505172c5c867c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a8124d7fbb1f3213cde1f3808c92995aa6a0fac28afd149a607505172c5c867c", kill_on_drop: false }` [INFO] [stdout] a8124d7fbb1f3213cde1f3808c92995aa6a0fac28afd149a607505172c5c867c