[INFO] fetching crate biofile 1.10.3... [INFO] testing biofile-1.10.3 against try#722e1797249a965b6335aebd65d777f917e498f1 for pr-91031 [INFO] extracting crate biofile 1.10.3 into /workspace/builds/worker-114/source [INFO] validating manifest of crates.io crate biofile 1.10.3 on toolchain 722e1797249a965b6335aebd65d777f917e498f1 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate biofile 1.10.3 [INFO] finished tweaking crates.io crate biofile 1.10.3 [INFO] tweaked toml for crates.io crate biofile 1.10.3 written to /workspace/builds/worker-114/source/Cargo.toml [INFO] crate crates.io crate biofile 1.10.3 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-114/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-114/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 13ac58cc9133e45c9781b2ca566f2a4ffa65552a6414d51aa92cfd68d4dd8d51 [INFO] running `Command { std: "docker" "start" "-a" "13ac58cc9133e45c9781b2ca566f2a4ffa65552a6414d51aa92cfd68d4dd8d51", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "13ac58cc9133e45c9781b2ca566f2a4ffa65552a6414d51aa92cfd68d4dd8d51", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "13ac58cc9133e45c9781b2ca566f2a4ffa65552a6414d51aa92cfd68d4dd8d51", kill_on_drop: false }` [INFO] [stdout] 13ac58cc9133e45c9781b2ca566f2a4ffa65552a6414d51aa92cfd68d4dd8d51 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-114/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-114/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] fc0928a5cfe841c333a171f3b77ab995e419122cb2328eebd20637e901818b6c [INFO] running `Command { std: "docker" "start" "-a" "fc0928a5cfe841c333a171f3b77ab995e419122cb2328eebd20637e901818b6c", kill_on_drop: false }` [INFO] [stderr] Compiling autocfg v0.1.6 [INFO] [stderr] Compiling libc v0.2.62 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling arrayvec v0.4.11 [INFO] [stderr] Compiling nodrop v0.1.13 [INFO] [stderr] Compiling getrandom v0.1.12 [INFO] [stderr] Compiling scopeguard v1.0.0 [INFO] [stderr] Compiling either v1.5.3 [INFO] [stderr] Compiling rayon-core v1.6.0 [INFO] [stderr] Compiling bitflags v1.2.0 [INFO] [stderr] Compiling ppv-lite86 v0.2.5 [INFO] [stderr] Compiling matrixmultiply v0.1.15 [INFO] [stderr] Compiling log v0.4.11 [INFO] [stderr] Compiling unicode-width v0.1.8 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling ndarray v0.12.1 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling rawpointer v0.1.0 [INFO] [stderr] Compiling itertools v0.7.11 [INFO] [stderr] Compiling memoffset v0.5.1 [INFO] [stderr] Compiling crossbeam-utils v0.6.6 [INFO] [stderr] Compiling num-traits v0.2.8 [INFO] [stderr] Compiling num-integer v0.1.41 [INFO] [stderr] Compiling num-complex v0.2.3 [INFO] [stderr] Compiling num-bigint v0.2.3 [INFO] [stderr] Compiling num-iter v0.1.39 [INFO] [stderr] Compiling num-rational v0.2.2 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling c2-chacha v0.2.2 [INFO] [stderr] Compiling crossbeam-queue v0.1.2 [INFO] [stderr] Compiling crossbeam-epoch v0.7.2 [INFO] [stderr] Compiling num_cpus v1.10.1 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling rand_core v0.5.1 [INFO] [stderr] Compiling crossbeam-deque v0.7.1 [INFO] [stderr] Compiling rand_chacha v0.2.1 [INFO] [stderr] Compiling rand v0.7.2 [INFO] [stderr] Compiling rayon v1.2.0 [INFO] [stderr] Compiling num v0.2.0 [INFO] [stderr] Compiling math v0.10.0 [INFO] [stderr] Compiling program-flow v0.1.3 [INFO] [stderr] Compiling biofile v1.10.3 (/opt/rustwide/workdir) [INFO] [stdout] warning: the feature `bufreader_seek_relative` has been stable since 1.53.0 and no longer requires an attribute to enable [INFO] [stdout] --> src/lib.rs:1:12 [INFO] [stdout] | [INFO] [stdout] 1 | #![feature(bufreader_seek_relative)] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(stable_features)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: panic message is not a string literal [INFO] [stdout] --> src/peak_file.rs:132:33 [INFO] [stdout] | [INFO] [stdout] 132 | s => panic!(format!("unrecognized strand symbol {}", s)), [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_fmt_panics)]` on by default [INFO] [stdout] = note: this usage of panic!() is deprecated; it will be a hard error in Rust 2021 [INFO] [stdout] = note: for more information, see [INFO] [stdout] = note: the panic!() macro supports formatting, so there's no need for the format!() macro here [INFO] [stdout] help: remove the `format!(..)` macro call [INFO] [stdout] | [INFO] [stdout] 132 - s => panic!(format!("unrecognized strand symbol {}", s)), [INFO] [stdout] 132 + s => panic!("unrecognized strand symbol {}", s), [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: panic message is not a string literal [INFO] [stdout] --> src/plink_bed/plink_snps.rs:17:13 [INFO] [stdout] | [INFO] [stdout] 17 | / format!( [INFO] [stdout] 18 | | "num_snps ({}) > bytes.len() * 4 = {}", [INFO] [stdout] 19 | | num_snps, [INFO] [stdout] 20 | | bytes.len() * 4 [INFO] [stdout] 21 | | ) [INFO] [stdout] | |_____________^ [INFO] [stdout] | [INFO] [stdout] = note: this usage of assert!() is deprecated; it will be a hard error in Rust 2021 [INFO] [stdout] = note: for more information, see [INFO] [stdout] = note: the assert!() macro supports formatting, so there's no need for the format!() macro here [INFO] [stdout] help: remove the `format!(..)` macro call [INFO] [stdout] | [INFO] [stdout] 17 ~ [INFO] [stdout] 18 | "num_snps ({}) > bytes.len() * 4 = {}", [INFO] [stdout] 19 | num_snps, [INFO] [stdout] 20 | bytes.len() * 4 [INFO] [stdout] 21 ~ [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 3 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 11.09s [INFO] running `Command { std: "docker" "inspect" "fc0928a5cfe841c333a171f3b77ab995e419122cb2328eebd20637e901818b6c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "fc0928a5cfe841c333a171f3b77ab995e419122cb2328eebd20637e901818b6c", kill_on_drop: false }` [INFO] [stdout] fc0928a5cfe841c333a171f3b77ab995e419122cb2328eebd20637e901818b6c [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-114/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-114/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] e429f632a20e5020113331fde48fefd5d951b12e32e38b32c03120eb0ff8716b [INFO] running `Command { std: "docker" "start" "-a" "e429f632a20e5020113331fde48fefd5d951b12e32e38b32c03120eb0ff8716b", kill_on_drop: false }` [INFO] [stderr] Compiling remove_dir_all v0.5.2 [INFO] [stderr] Compiling rand_chacha v0.1.1 [INFO] [stderr] Compiling rand_pcg v0.1.2 [INFO] [stderr] Compiling rand v0.6.5 [INFO] [stderr] Compiling rand_os v0.1.3 [INFO] [stdout] warning: the feature `bufreader_seek_relative` has been stable since 1.53.0 and no longer requires an attribute to enable [INFO] [stdout] --> src/lib.rs:1:12 [INFO] [stdout] | [INFO] [stdout] 1 | #![feature(bufreader_seek_relative)] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(stable_features)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: panic message is not a string literal [INFO] [stdout] --> src/peak_file.rs:132:33 [INFO] [stdout] | [INFO] [stdout] 132 | s => panic!(format!("unrecognized strand symbol {}", s)), [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_fmt_panics)]` on by default [INFO] [stdout] = note: this usage of panic!() is deprecated; it will be a hard error in Rust 2021 [INFO] [stdout] = note: for more information, see [INFO] [stdout] = note: the panic!() macro supports formatting, so there's no need for the format!() macro here [INFO] [stdout] help: remove the `format!(..)` macro call [INFO] [stdout] | [INFO] [stdout] 132 - s => panic!(format!("unrecognized strand symbol {}", s)), [INFO] [stdout] 132 + s => panic!("unrecognized strand symbol {}", s), [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: panic message is not a string literal [INFO] [stdout] --> src/plink_bed/plink_snps.rs:17:13 [INFO] [stdout] | [INFO] [stdout] 17 | / format!( [INFO] [stdout] 18 | | "num_snps ({}) > bytes.len() * 4 = {}", [INFO] [stdout] 19 | | num_snps, [INFO] [stdout] 20 | | bytes.len() * 4 [INFO] [stdout] 21 | | ) [INFO] [stdout] | |_____________^ [INFO] [stdout] | [INFO] [stdout] = note: this usage of assert!() is deprecated; it will be a hard error in Rust 2021 [INFO] [stdout] = note: for more information, see [INFO] [stdout] = note: the assert!() macro supports formatting, so there's no need for the format!() macro here [INFO] [stdout] help: remove the `format!(..)` macro call [INFO] [stdout] | [INFO] [stdout] 17 ~ [INFO] [stdout] 18 | "num_snps ({}) > bytes.len() * 4 = {}", [INFO] [stdout] 19 | num_snps, [INFO] [stdout] 20 | bytes.len() * 4 [INFO] [stdout] 21 ~ [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 3 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling tempfile v3.1.0 [INFO] [stderr] Compiling ndarray-rand v0.9.0 [INFO] [stderr] Compiling biofile v1.10.3 (/opt/rustwide/workdir) [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/bed.rs:282:17 [INFO] [stdout] | [INFO] [stdout] 282 | ToChromIntervalValueIter::get_chrom_to_interval_to_val( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ help: use `dyn`: `` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2018) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/bed.rs:326:17 [INFO] [stdout] | [INFO] [stdout] 326 | ToChromIntervalValueIter::get_chrom_to_interval_to_val( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ help: use `dyn`: `` [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2018) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/bedgraph.rs:196:13 [INFO] [stdout] | [INFO] [stdout] 196 | ToChromIntervalValueIter::get_chrom_to_interval_to_val( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ help: use `dyn`: `` [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2018) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `val` [INFO] [stdout] --> src/traits/trait_impl.rs:45:41 [INFO] [stdout] | [INFO] [stdout] 45 | let (chrom, start, end, val) = [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_val` [INFO] [stdout] ... [INFO] [stdout] 55 | test_data_line!("chr1", 2, 10, None::); [INFO] [stdout] | ------------------------------------------- in this macro invocation [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] = note: this warning originates in the macro `test_data_line` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `val` [INFO] [stdout] --> src/traits/trait_impl.rs:45:41 [INFO] [stdout] | [INFO] [stdout] 45 | let (chrom, start, end, val) = [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_val` [INFO] [stdout] ... [INFO] [stdout] 56 | test_data_line!("chrX", 200, 201, Some(19i32)); [INFO] [stdout] | ---------------------------------------------- in this macro invocation [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `test_data_line` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `val` [INFO] [stdout] --> src/traits/trait_impl.rs:45:41 [INFO] [stdout] | [INFO] [stdout] 45 | let (chrom, start, end, val) = [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_val` [INFO] [stdout] ... [INFO] [stdout] 57 | test_data_line!("chrY", 100, 4000, Some(-2i32)); [INFO] [stdout] | ----------------------------------------------- in this macro invocation [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `test_data_line` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the feature `bufreader_seek_relative` has been stable since 1.53.0 and no longer requires an attribute to enable [INFO] [stdout] --> src/lib.rs:1:12 [INFO] [stdout] | [INFO] [stdout] 1 | #![feature(bufreader_seek_relative)] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(stable_features)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: panic message is not a string literal [INFO] [stdout] --> src/peak_file.rs:132:33 [INFO] [stdout] | [INFO] [stdout] 132 | s => panic!(format!("unrecognized strand symbol {}", s)), [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_fmt_panics)]` on by default [INFO] [stdout] = note: this usage of panic!() is deprecated; it will be a hard error in Rust 2021 [INFO] [stdout] = note: for more information, see [INFO] [stdout] = note: the panic!() macro supports formatting, so there's no need for the format!() macro here [INFO] [stdout] help: remove the `format!(..)` macro call [INFO] [stdout] | [INFO] [stdout] 132 - s => panic!(format!("unrecognized strand symbol {}", s)), [INFO] [stdout] 132 + s => panic!("unrecognized strand symbol {}", s), [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: panic message is not a string literal [INFO] [stdout] --> src/plink_bed/plink_snps.rs:17:13 [INFO] [stdout] | [INFO] [stdout] 17 | / format!( [INFO] [stdout] 18 | | "num_snps ({}) > bytes.len() * 4 = {}", [INFO] [stdout] 19 | | num_snps, [INFO] [stdout] 20 | | bytes.len() * 4 [INFO] [stdout] 21 | | ) [INFO] [stdout] | |_____________^ [INFO] [stdout] | [INFO] [stdout] = note: this usage of assert!() is deprecated; it will be a hard error in Rust 2021 [INFO] [stdout] = note: for more information, see [INFO] [stdout] = note: the assert!() macro supports formatting, so there's no need for the format!() macro here [INFO] [stdout] help: remove the `format!(..)` macro call [INFO] [stdout] | [INFO] [stdout] 17 ~ [INFO] [stdout] 18 | "num_snps ({}) > bytes.len() * 4 = {}", [INFO] [stdout] 19 | num_snps, [INFO] [stdout] 20 | bytes.len() * 4 [INFO] [stdout] 21 ~ [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 9 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 5.73s [INFO] running `Command { std: "docker" "inspect" "e429f632a20e5020113331fde48fefd5d951b12e32e38b32c03120eb0ff8716b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e429f632a20e5020113331fde48fefd5d951b12e32e38b32c03120eb0ff8716b", kill_on_drop: false }` [INFO] [stdout] e429f632a20e5020113331fde48fefd5d951b12e32e38b32c03120eb0ff8716b [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-114/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-114/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] ee674f969495c0dab94ae63469fa7aefdb271cad099ecc017f4cc28ac585d8bc [INFO] running `Command { std: "docker" "start" "-a" "ee674f969495c0dab94ae63469fa7aefdb271cad099ecc017f4cc28ac585d8bc", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] warning: the feature `bufreader_seek_relative` has been stable since 1.53.0 and no longer requires an attribute to enable [INFO] [stderr] --> src/lib.rs:1:12 [INFO] [stderr] | [INFO] [stderr] 1 | #![feature(bufreader_seek_relative)] [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(stable_features)]` on by default [INFO] [stderr] [INFO] [stderr] warning: panic message is not a string literal [INFO] [stderr] --> src/peak_file.rs:132:33 [INFO] [stderr] | [INFO] [stderr] 132 | s => panic!(format!("unrecognized strand symbol {}", s)), [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(non_fmt_panics)]` on by default [INFO] [stderr] = note: this usage of panic!() is deprecated; it will be a hard error in Rust 2021 [INFO] [stderr] = note: for more information, see [INFO] [stderr] = note: the panic!() macro supports formatting, so there's no need for the format!() macro here [INFO] [stderr] help: remove the `format!(..)` macro call [INFO] [stderr] | [INFO] [stderr] 132 - s => panic!(format!("unrecognized strand symbol {}", s)), [INFO] [stderr] 132 + s => panic!("unrecognized strand symbol {}", s), [INFO] [stderr] | [INFO] [stderr] [INFO] [stderr] warning: panic message is not a string literal [INFO] [stderr] --> src/plink_bed/plink_snps.rs:17:13 [INFO] [stderr] | [INFO] [stderr] 17 | / format!( [INFO] [stderr] 18 | | "num_snps ({}) > bytes.len() * 4 = {}", [INFO] [stderr] 19 | | num_snps, [INFO] [stderr] 20 | | bytes.len() * 4 [INFO] [stderr] 21 | | ) [INFO] [stderr] | |_____________^ [INFO] [stderr] | [INFO] [stderr] = note: this usage of assert!() is deprecated; it will be a hard error in Rust 2021 [INFO] [stderr] = note: for more information, see [INFO] [stderr] = note: the assert!() macro supports formatting, so there's no need for the format!() macro here [INFO] [stderr] help: remove the `format!(..)` macro call [INFO] [stderr] | [INFO] [stderr] 17 ~ [INFO] [stderr] 18 | "num_snps ({}) > bytes.len() * 4 = {}", [INFO] [stderr] 19 | num_snps, [INFO] [stderr] 20 | bytes.len() * 4 [INFO] [stderr] 21 ~ [INFO] [stderr] | [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/bed.rs:282:17 [INFO] [stderr] | [INFO] [stderr] 282 | ToChromIntervalValueIter::get_chrom_to_interval_to_val( [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^ help: use `dyn`: `` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] = warning: this is accepted in the current edition (Rust 2018) but is a hard error in Rust 2021! [INFO] [stderr] = note: for more information, see [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/bed.rs:326:17 [INFO] [stderr] | [INFO] [stderr] 326 | ToChromIntervalValueIter::get_chrom_to_interval_to_val( [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^ help: use `dyn`: `` [INFO] [stderr] | [INFO] [stderr] = warning: this is accepted in the current edition (Rust 2018) but is a hard error in Rust 2021! [INFO] [stderr] = note: for more information, see [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/bedgraph.rs:196:13 [INFO] [stderr] | [INFO] [stderr] 196 | ToChromIntervalValueIter::get_chrom_to_interval_to_val( [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^ help: use `dyn`: `` [INFO] [stderr] | [INFO] [stderr] = warning: this is accepted in the current edition (Rust 2018) but is a hard error in Rust 2021! [INFO] [stderr] = note: for more information, see [INFO] [stderr] [INFO] [stderr] warning: unused variable: `val` [INFO] [stderr] --> src/traits/trait_impl.rs:45:41 [INFO] [stderr] | [INFO] [stderr] 45 | let (chrom, start, end, val) = [INFO] [stderr] | ^^^ help: if this is intentional, prefix it with an underscore: `_val` [INFO] [stderr] ... [INFO] [stderr] 55 | test_data_line!("chr1", 2, 10, None::); [INFO] [stderr] | ------------------------------------------- in this macro invocation [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_variables)]` on by default [INFO] [stderr] = note: this warning originates in the macro `test_data_line` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: unused variable: `val` [INFO] [stderr] --> src/traits/trait_impl.rs:45:41 [INFO] [stderr] | [INFO] [stderr] 45 | let (chrom, start, end, val) = [INFO] [stderr] | ^^^ help: if this is intentional, prefix it with an underscore: `_val` [INFO] [stderr] ... [INFO] [stderr] 56 | test_data_line!("chrX", 200, 201, Some(19i32)); [INFO] [stderr] | ---------------------------------------------- in this macro invocation [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in the macro `test_data_line` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: unused variable: `val` [INFO] [stderr] --> src/traits/trait_impl.rs:45:41 [INFO] [stderr] | [INFO] [stderr] 45 | let (chrom, start, end, val) = [INFO] [stderr] | ^^^ help: if this is intentional, prefix it with an underscore: `_val` [INFO] [stderr] ... [INFO] [stderr] 57 | test_data_line!("chrY", 100, 4000, Some(-2i32)); [INFO] [stderr] | ----------------------------------------------- in this macro invocation [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in the macro `test_data_line` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: `biofile` (lib) generated 3 warnings [INFO] [stderr] warning: `biofile` (lib test) generated 9 warnings (3 duplicates) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.59s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/biofile-d2594958414b93a5) [INFO] [stdout] [INFO] [stdout] running 28 tests [INFO] [stdout] test bed::paired_end_collator::tests::test_get_valid_strands ... ok [INFO] [stdout] test bed::paired_end_collator::tests::test_is_overlapping ... ok [INFO] [stdout] test bed::paired_end_collator::tests::test_min_max_coordinates ... ok [INFO] [stdout] test bed::paired_end_collator::tests::test_pair_distance_covered ... ok [INFO] [stdout] test bed::paired_end_collator::tests::test_paired_midpoint ... ok [INFO] [stdout] test bed::paired_end_collator::tests::test_valid_strands ... ok [INFO] [stdout] test bed::tests::test_bed_to_chrom_interval_value_iter ... ok [INFO] [stdout] test bed::tests::test_get_chrom_to_interval_to_val ... ok [INFO] [stdout] test bedgraph::tests::test_bedgraph_to_chrom_interval_value_iter ... ok [INFO] [stdout] test bed::tests::test_get_chrom_to_intervals ... ok [INFO] [stdout] test peak_file::tests::test_get_chrom_to_interval_to_val ... ok [INFO] [stdout] test plink_bed::plink_snps::tests::test_plink_snps ... ok [INFO] [stdout] test plink_bed::plink_snps::tests::test_plink_snps_from_geno ... ok [INFO] [stdout] test bedgraph::tests::test_get_chrom_to_interval_to_val ... ok [INFO] [stdout] test peak_file::tests::test_get_chrom_to_peaks ... ok [INFO] [stdout] test plink_bim::tests::test_get_all_chroms ... ok [INFO] [stdout] test traits::trait_impl::tests::test_bed_data_line_to_chorm_start_end_val ... ok [INFO] [stdout] test plink_bim::tests::test_fileline_partitions_iter ... ok [INFO] [stdout] test plink_bim::tests::test_get_chrom_to_positions ... ok [INFO] [stdout] test plink_bim::tests::test_get_fileline_partitions ... ok [INFO] [stdout] test bed::bed_writer::tests::test_write_bedgraph ... ok [INFO] [stdout] test bed::bed_writer::tests::test_bed_writer ... ok [INFO] [stdout] test bed::paired_end_collator::tests::test_collator ... ok [INFO] [stdout] test plink_bed::tests::test_convert_to_dominance_representation ... ok [INFO] [stdout] test plink_bed::tests::test_multiple_bfiles ... ok [INFO] [stdout] test plink_bed::tests::test_chunk_iter ... ok [INFO] [stdout] test plink_bed::tests::test_create_dominance_geno_bed ... ok [INFO] [stdout] test plink_bed::tests::test_create_bed ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 28 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.07s [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/collate_paired_end-14593ab45a2169e4) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Doc-tests biofile [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "ee674f969495c0dab94ae63469fa7aefdb271cad099ecc017f4cc28ac585d8bc", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ee674f969495c0dab94ae63469fa7aefdb271cad099ecc017f4cc28ac585d8bc", kill_on_drop: false }` [INFO] [stdout] ee674f969495c0dab94ae63469fa7aefdb271cad099ecc017f4cc28ac585d8bc