[INFO] fetching crate bio-types 0.12.1...
[INFO] testing bio-types-0.12.1 against try#722e1797249a965b6335aebd65d777f917e498f1 for pr-91031
[INFO] extracting crate bio-types 0.12.1 into /workspace/builds/worker-5/source
[INFO] validating manifest of crates.io crate bio-types 0.12.1 on toolchain 722e1797249a965b6335aebd65d777f917e498f1
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate bio-types 0.12.1
[INFO] finished tweaking crates.io crate bio-types 0.12.1
[INFO] tweaked toml for crates.io crate bio-types 0.12.1 written to /workspace/builds/worker-5/source/Cargo.toml
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] warning: only one of `license` or `license-file` is necessary
[INFO] [stderr] `license` should be used if the package license can be expressed with a standard SPDX expression.
[INFO] [stderr] `license-file` should be used if the package uses a non-standard license.
[INFO] [stderr] See https://doc.rust-lang.org/cargo/reference/manifest.html#the-license-and-license-file-fields for more information.
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 8a834594a422b05075fb8e2a26acdf2f03cf494cb23784304ac117ee8ee975ba
[INFO] running `Command { std: "docker" "start" "-a" "8a834594a422b05075fb8e2a26acdf2f03cf494cb23784304ac117ee8ee975ba", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "8a834594a422b05075fb8e2a26acdf2f03cf494cb23784304ac117ee8ee975ba", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "8a834594a422b05075fb8e2a26acdf2f03cf494cb23784304ac117ee8ee975ba", kill_on_drop: false }`
[INFO] [stdout] 8a834594a422b05075fb8e2a26acdf2f03cf494cb23784304ac117ee8ee975ba
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 0e567dfb17501ad6f63c2e55d5b0875e774c5d501067dfe1390f6c3af7c0e49d
[INFO] running `Command { std: "docker" "start" "-a" "0e567dfb17501ad6f63c2e55d5b0875e774c5d501067dfe1390f6c3af7c0e49d", kill_on_drop: false }`
[INFO] [stderr] warning: only one of `license` or `license-file` is necessary
[INFO] [stderr] `license` should be used if the package license can be expressed with a standard SPDX expression.
[INFO] [stderr] `license-file` should be used if the package uses a non-standard license.
[INFO] [stderr] See https://doc.rust-lang.org/cargo/reference/manifest.html#the-license-and-license-file-fields for more information.
[INFO] [stderr]    Compiling syn v1.0.81
[INFO] [stderr]    Compiling memchr v2.4.1
[INFO] [stderr]    Compiling rustversion v1.0.5
[INFO] [stderr]    Compiling unicode-segmentation v1.8.0
[INFO] [stderr]    Compiling regex-syntax v0.6.25
[INFO] [stderr]    Compiling heck v0.3.3
[INFO] [stderr]    Compiling aho-corasick v0.7.18
[INFO] [stderr]    Compiling regex v1.5.4
[INFO] [stderr]    Compiling thiserror-impl v1.0.30
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling strum_macros v0.23.0
[INFO] [stderr]    Compiling thiserror v1.0.30
[INFO] [stderr]    Compiling bio-types v0.12.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 7.94s
[INFO] running `Command { std: "docker" "inspect" "0e567dfb17501ad6f63c2e55d5b0875e774c5d501067dfe1390f6c3af7c0e49d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "0e567dfb17501ad6f63c2e55d5b0875e774c5d501067dfe1390f6c3af7c0e49d", kill_on_drop: false }`
[INFO] [stdout] 0e567dfb17501ad6f63c2e55d5b0875e774c5d501067dfe1390f6c3af7c0e49d
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 3548daacdd5acb916e8642ccbf38708c943f10bb8f75f0dd548e1bf00c92d8e9
[INFO] running `Command { std: "docker" "start" "-a" "3548daacdd5acb916e8642ccbf38708c943f10bb8f75f0dd548e1bf00c92d8e9", kill_on_drop: false }`
[INFO] [stderr] warning: only one of `license` or `license-file` is necessary
[INFO] [stderr] `license` should be used if the package license can be expressed with a standard SPDX expression.
[INFO] [stderr] `license-file` should be used if the package uses a non-standard license.
[INFO] [stderr] See https://doc.rust-lang.org/cargo/reference/manifest.html#the-license-and-license-file-fields for more information.
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]    Compiling bio-types v0.12.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 1.85s
[INFO] running `Command { std: "docker" "inspect" "3548daacdd5acb916e8642ccbf38708c943f10bb8f75f0dd548e1bf00c92d8e9", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "3548daacdd5acb916e8642ccbf38708c943f10bb8f75f0dd548e1bf00c92d8e9", kill_on_drop: false }`
[INFO] [stdout] 3548daacdd5acb916e8642ccbf38708c943f10bb8f75f0dd548e1bf00c92d8e9
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 84059b543e3b61134f40f759f8eed0f5a17ef501caac95615bb47681f31adfa8
[INFO] running `Command { std: "docker" "start" "-a" "84059b543e3b61134f40f759f8eed0f5a17ef501caac95615bb47681f31adfa8", kill_on_drop: false }`
[INFO] [stderr] warning: only one of `license` or `license-file` is necessary
[INFO] [stderr] `license` should be used if the package license can be expressed with a standard SPDX expression.
[INFO] [stderr] `license-file` should be used if the package uses a non-standard license.
[INFO] [stderr] See https://doc.rust-lang.org/cargo/reference/manifest.html#the-license-and-license-file-fields for more information.
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.08s
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/bio_types-8a2f8fc51de5ec86)
[INFO] [stdout] 
[INFO] [stdout] running 15 tests
[INFO] [stdout] test alignment::tests::test_cigar ... ok
[INFO] [stdout] test alignment::tests::test_path ... ok
[INFO] [stdout] test alignment::tests::test_pretty ... ok
[INFO] [stdout] test annot::pos::tests::loc_impl ... ok
[INFO] [stdout] test annot::pos::tests::pos_accessors ... ok
[INFO] [stdout] test strand::tests::test_strand ... ok
[INFO] [stdout] test strand::tests::test_req_strand ... ok
[INFO] [stdout] test annot::pos::tests::string_representation ... ok
[INFO] [stdout] test annot::contig::tests::first_and_last ... ok
[INFO] [stdout] test annot::contig::tests::into_outof ... ok
[INFO] [stdout] test annot::spliced::tests::into_outof ... ok
[INFO] [stdout] test annot::pos::tests::strand_conversion ... ok
[INFO] [stdout] test annot::spliced::tests::intersection ... ok
[INFO] [stdout] test annot::spliced::tests::length_start_to_contig ... ok
[INFO] [stdout] test annot::contig::tests::intersection ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 15 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests bio-types
[INFO] [stdout] 
[INFO] [stdout] running 17 tests
[INFO] [stdout] test src/annot/contig.rs - annot::contig::Contig<R,ReqStrand>::extend_upstream (line 150) ... ok
[INFO] [stdout] test src/annot/contig.rs - annot::contig::Contig<R,S>::new (line 57) ... ok
[INFO] [stdout] test src/annot/contig.rs - annot::contig::Contig<R,ReqStrand>::extend_downstream (line 177) ... ok
[INFO] [stdout] test src/sequence.rs - sequence::SequenceReadPairOrientation (line 39) ... ok
[INFO] [stdout] test src/annot/pos.rs - annot::pos::Pos<R,S>::new (line 55) ... ok
[INFO] [stdout] test src/alignment.rs - alignment::Alignment::path (line 332) ... ok
[INFO] [stdout] test src/annot/refids.rs - annot::refids::RefIDSet (line 14) ... ok
[INFO] [stdout] test src/strand.rs - strand::ReqStrand::on_strand (line 175) ... ok
[INFO] [stdout] test src/annot/pos.rs - annot::pos::Pos<R,ReqStrand>::sub_assign (line 127) ... ok
[INFO] [stdout] test src/annot/contig.rs - annot::contig::Contig (line 32) ... ok
[INFO] [stdout] test src/alignment.rs - alignment::Alignment::cigar (line 95) ... ok
[INFO] [stdout] test src/annot/pos.rs - annot::pos::Pos<R,ReqStrand>::add_assign (line 96) ... ok
[INFO] [stdout] test src/annot/spliced.rs - annot::spliced::Spliced<R,S>::new (line 238) ... ok
[INFO] [stdout] test src/annot/pos.rs - annot::pos::Pos (line 31) ... ok
[INFO] [stdout] test src/annot/spliced.rs - annot::spliced::Spliced (line 208) ... ok
[INFO] [stdout] test src/annot/contig.rs - annot::contig::Contig<R,S>::with_first_length (line 82) ... ok
[INFO] [stdout] test src/annot/mod.rs - annot (line 30) ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 17 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 2.01s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "84059b543e3b61134f40f759f8eed0f5a17ef501caac95615bb47681f31adfa8", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "84059b543e3b61134f40f759f8eed0f5a17ef501caac95615bb47681f31adfa8", kill_on_drop: false }`
[INFO] [stdout] 84059b543e3b61134f40f759f8eed0f5a17ef501caac95615bb47681f31adfa8