[INFO] cloning repository https://github.com/zaeleus/noodles-count-features [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/zaeleus/noodles-count-features" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzaeleus%2Fnoodles-count-features", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzaeleus%2Fnoodles-count-features'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 0243119c2c965adbd0f28afa8447f8db61b7ffa1 [INFO] testing zaeleus/noodles-count-features against try#722e1797249a965b6335aebd65d777f917e498f1 for pr-91031 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzaeleus%2Fnoodles-count-features" "/workspace/builds/worker-18/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-18/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/zaeleus/noodles-count-features on toolchain 722e1797249a965b6335aebd65d777f917e498f1 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/zaeleus/noodles-count-features [INFO] finished tweaking git repo https://github.com/zaeleus/noodles-count-features [INFO] tweaked toml for git repo https://github.com/zaeleus/noodles-count-features written to /workspace/builds/worker-18/source/Cargo.toml [INFO] crate git repo https://github.com/zaeleus/noodles-count-features already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Updating git repository `https://github.com/zaeleus/interval-tree.git` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded git-testament v0.2.0 [INFO] [stderr] Downloaded no-std-compat v0.4.1 [INFO] [stderr] Downloaded git-testament-derive v0.1.12 [INFO] [stderr] Downloaded noodles-bgzf v0.4.0 [INFO] [stderr] Downloaded noodles-core v0.2.3 [INFO] [stderr] Downloaded noodles-sam v0.6.0 [INFO] [stderr] Downloaded noodles v0.11.0 [INFO] [stderr] Downloaded noodles-csi v0.3.0 [INFO] [stderr] Downloaded noodles-gff v0.3.0 [INFO] [stderr] Downloaded noodles-bam v0.7.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-18/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-18/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 1b8f6a40d8f8b640de56d0faa1334b1c273227f3e58694a8c2d74236c80af72f [INFO] running `Command { std: "docker" "start" "-a" "1b8f6a40d8f8b640de56d0faa1334b1c273227f3e58694a8c2d74236c80af72f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "1b8f6a40d8f8b640de56d0faa1334b1c273227f3e58694a8c2d74236c80af72f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "1b8f6a40d8f8b640de56d0faa1334b1c273227f3e58694a8c2d74236c80af72f", kill_on_drop: false }` [INFO] [stdout] 1b8f6a40d8f8b640de56d0faa1334b1c273227f3e58694a8c2d74236c80af72f [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-18/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-18/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 4de7662d5fb418ea6e7da10c7ac64ccbedf4ccbe7b57f550ce436ba9f6de5600 [INFO] running `Command { std: "docker" "start" "-a" "4de7662d5fb418ea6e7da10c7ac64ccbedf4ccbe7b57f550ce436ba9f6de5600", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling autocfg v1.0.1 [INFO] [stderr] Compiling libc v0.2.105 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling pin-project-lite v0.2.7 [INFO] [stderr] Compiling futures-core v0.3.17 [INFO] [stderr] Compiling memchr v2.4.1 [INFO] [stderr] Compiling log v0.4.14 [INFO] [stderr] Compiling futures-channel v0.3.17 [INFO] [stderr] Compiling futures-task v0.3.17 [INFO] [stderr] Compiling futures-sink v0.3.17 [INFO] [stderr] Compiling proc-macro2 v1.0.32 [INFO] [stderr] Compiling crc32fast v1.2.1 [INFO] [stderr] Compiling pin-utils v0.1.0 [INFO] [stderr] Compiling bytes v1.1.0 [INFO] [stderr] Compiling adler v1.0.2 [INFO] [stderr] Compiling futures-io v0.3.17 [INFO] [stderr] Compiling unicode-xid v0.2.2 [INFO] [stderr] Compiling slab v0.4.5 [INFO] [stderr] Compiling syn v1.0.81 [INFO] [stderr] Compiling byteorder v1.4.3 [INFO] [stderr] Compiling bitflags v1.3.2 [INFO] [stderr] Compiling serde v1.0.130 [INFO] [stderr] Compiling hashbrown v0.11.2 [INFO] [stderr] Compiling regex-syntax v0.6.25 [INFO] [stderr] Compiling ryu v1.0.5 [INFO] [stderr] Compiling serde_json v1.0.68 [INFO] [stderr] Compiling bit-vec v0.6.3 [INFO] [stderr] Compiling once_cell v1.8.0 [INFO] [stderr] Compiling unicode-width v0.1.9 [INFO] [stderr] Compiling percent-encoding v2.1.0 [INFO] [stderr] Compiling itoa v0.4.8 [INFO] [stderr] Compiling anyhow v1.0.44 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling smallvec v1.7.0 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling ansi_term v0.12.1 [INFO] [stderr] Compiling no-std-compat v0.4.1 [INFO] [stderr] Compiling interval-tree v0.2.0 (https://github.com/zaeleus/interval-tree.git?rev=e303d7254d53de5c418d6079d4b66c30c10958d4#e303d725) [INFO] [stderr] Compiling tracing-core v0.1.21 [INFO] [stderr] Compiling sharded-slab v0.1.4 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling noodles-gff v0.3.0 [INFO] [stderr] Compiling thread_local v1.1.3 [INFO] [stderr] Compiling futures-util v0.3.17 [INFO] [stderr] Compiling tokio v1.12.0 [INFO] [stderr] Compiling miniz_oxide v0.4.4 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling indexmap v1.7.0 [INFO] [stderr] Compiling tracing-log v0.1.2 [INFO] [stderr] Compiling num_cpus v1.13.0 [INFO] [stderr] Compiling time v0.1.44 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling tracing-serde v0.1.2 [INFO] [stderr] Compiling regex-automata v0.1.10 [INFO] [stderr] Compiling regex v1.5.4 [INFO] [stderr] Compiling quote v1.0.10 [INFO] [stderr] Compiling flate2 v1.0.22 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling chrono v0.4.19 [INFO] [stderr] Compiling matchers v0.0.1 [INFO] [stderr] Compiling tokio-util v0.6.8 [INFO] [stderr] Compiling futures v0.3.17 [INFO] [stderr] Compiling noodles-bgzf v0.4.0 [INFO] [stderr] Compiling noodles-sam v0.6.0 [INFO] [stderr] Compiling noodles-csi v0.3.0 [INFO] [stderr] Compiling noodles-core v0.2.3 [INFO] [stderr] Compiling noodles-bam v0.7.0 [INFO] [stderr] Compiling noodles v0.11.0 [INFO] [stderr] Compiling tracing-attributes v0.1.18 [INFO] [stderr] Compiling git-testament-derive v0.1.12 [INFO] [stderr] Compiling git-testament v0.2.0 [INFO] [stderr] Compiling tracing v0.1.29 [INFO] [stderr] Compiling tracing-subscriber v0.2.25 [INFO] [stderr] Compiling noodles-squab v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1m 08s [INFO] running `Command { std: "docker" "inspect" "4de7662d5fb418ea6e7da10c7ac64ccbedf4ccbe7b57f550ce436ba9f6de5600", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4de7662d5fb418ea6e7da10c7ac64ccbedf4ccbe7b57f550ce436ba9f6de5600", kill_on_drop: false }` [INFO] [stdout] 4de7662d5fb418ea6e7da10c7ac64ccbedf4ccbe7b57f550ce436ba9f6de5600 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-18/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-18/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] a268db031da143f348e9400925895599b7572ee2d58132ac30ece3c86f4a15ab [INFO] running `Command { std: "docker" "start" "-a" "a268db031da143f348e9400925895599b7572ee2d58132ac30ece3c86f4a15ab", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling tokio v1.12.0 [INFO] [stderr] Compiling tokio-macros v1.5.0 [INFO] [stderr] Compiling tokio-util v0.6.8 [INFO] [stderr] Compiling noodles-bgzf v0.4.0 [INFO] [stderr] Compiling noodles-sam v0.6.0 [INFO] [stderr] Compiling noodles-csi v0.3.0 [INFO] [stderr] Compiling noodles-core v0.2.3 [INFO] [stderr] Compiling noodles-bam v0.7.0 [INFO] [stderr] Compiling noodles v0.11.0 [INFO] [stderr] Compiling noodles-squab v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 1m 22s [INFO] running `Command { std: "docker" "inspect" "a268db031da143f348e9400925895599b7572ee2d58132ac30ece3c86f4a15ab", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a268db031da143f348e9400925895599b7572ee2d58132ac30ece3c86f4a15ab", kill_on_drop: false }` [INFO] [stdout] a268db031da143f348e9400925895599b7572ee2d58132ac30ece3c86f4a15ab [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-18/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-18/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 12b42126742f608dd0d1968b74f03502e6d8156acb5a98cde30c530959aa773c [INFO] running `Command { std: "docker" "start" "-a" "12b42126742f608dd0d1968b74f03502e6d8156acb5a98cde30c530959aa773c", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 2.45s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/noodles_squab-7bdef7eb05a43f39) [INFO] [stdout] [INFO] [stdout] running 27 tests [INFO] [stdout] test commands::tests::test_from_str ... ok [INFO] [stdout] test count::context::tests::test_add_event ... ok [INFO] [stdout] test normalization::fpkm::tests::test_calculate_fpkms_with_missing_feature ... ok [INFO] [stdout] test count::context::tests::test_add ... ok [INFO] [stdout] test count::reader::tests::test_read_counts ... ok [INFO] [stdout] test record_pairs::pair_position::tests::test_try_from_flag ... ok [INFO] [stdout] test feature::tests::test_len ... ok [INFO] [stdout] test feature::tests::test_reference_sequence_name ... ok [INFO] [stdout] test feature::tests::test_start ... ok [INFO] [stdout] test normalization::tests::test_sum_nonoverlapping_feature_lengths ... ok [INFO] [stdout] test feature::tests::test_strand ... ok [INFO] [stdout] test match_intervals::tests::test_next ... ok [INFO] [stdout] test normalization::fpkm::tests::test_calculate_fpkms ... ok [INFO] [stdout] test feature::tests::test_is_empty ... ok [INFO] [stdout] test normalization::method::tests::test_from_str ... ok [INFO] [stdout] test feature::tests::test_end ... ok [INFO] [stdout] test count::writer::tests::test_write_stats ... ok [INFO] [stdout] test count::writer::tests::test_write_counts ... ok [INFO] [stdout] test normalization::tpm::tests::test_calculate_tpms_with_missing_feature ... ok [INFO] [stdout] test normalization::writer::tests::test_write_values ... ok [INFO] [stdout] test count::tests::test_get_reference ... ok [INFO] [stdout] test normalization::tpm::tests::test_calculate_tpms ... ok [INFO] [stdout] test normalization::tests::test_merge_features ... ok [INFO] [stdout] test record_pairs::tests::test_mate_key ... ok [INFO] [stdout] test record_pairs::tests::test_key ... ok [INFO] [stdout] test tests::test_read_features ... ok [INFO] [stdout] test record_pairs::pair_position::tests::test_mate ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 27 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.03s [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/noodles_squab-85137432c29f8cf0) [INFO] [stdout] [INFO] [stderr] Running tests/quantify_single_end_forward_test.rs (/opt/rustwide/target/debug/deps/quantify_single_end_forward_test-b5415d33fedb02d7) [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stderr] Doc-tests noodles-squab [INFO] [stdout] test test_quantify_with_single_end_forward_sample ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.08s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "12b42126742f608dd0d1968b74f03502e6d8156acb5a98cde30c530959aa773c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "12b42126742f608dd0d1968b74f03502e6d8156acb5a98cde30c530959aa773c", kill_on_drop: false }` [INFO] [stdout] 12b42126742f608dd0d1968b74f03502e6d8156acb5a98cde30c530959aa773c