[INFO] cloning repository https://github.com/mal2017/csc [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/mal2017/csc" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmal2017%2Fcsc", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmal2017%2Fcsc'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] d03c33ee5c6bc2e7583bd50315cc6203d9f34510 [INFO] testing mal2017/csc against try#722e1797249a965b6335aebd65d777f917e498f1 for pr-91031 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmal2017%2Fcsc" "/workspace/builds/worker-0/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-0/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/mal2017/csc on toolchain 722e1797249a965b6335aebd65d777f917e498f1 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/mal2017/csc [INFO] finished tweaking git repo https://github.com/mal2017/csc [INFO] tweaked toml for git repo https://github.com/mal2017/csc written to /workspace/builds/worker-0/source/Cargo.toml [INFO] crate git repo https://github.com/mal2017/csc already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating git repository `https://github.com/mal2017/ngslib.git` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded bio-types v0.4.0 [INFO] [stderr] Downloaded clang-sys v0.22.0 [INFO] [stderr] Downloaded bindgen v0.36.1 [INFO] [stderr] Downloaded rust-htslib v0.22.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 81d7f670ac5fd7c7073756a0cea2acd92b68bdba4ed9080f8da38626858df0e7 [INFO] running `Command { std: "docker" "start" "-a" "81d7f670ac5fd7c7073756a0cea2acd92b68bdba4ed9080f8da38626858df0e7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "81d7f670ac5fd7c7073756a0cea2acd92b68bdba4ed9080f8da38626858df0e7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "81d7f670ac5fd7c7073756a0cea2acd92b68bdba4ed9080f8da38626858df0e7", kill_on_drop: false }` [INFO] [stdout] 81d7f670ac5fd7c7073756a0cea2acd92b68bdba4ed9080f8da38626858df0e7 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 05cfdded76827658519f2a0120ed5612accd34f69849118ea93adcb9710dfd8f [INFO] running `Command { std: "docker" "start" "-a" "05cfdded76827658519f2a0120ed5612accd34f69849118ea93adcb9710dfd8f", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.51 [INFO] [stderr] Compiling syn v0.15.31 [INFO] [stderr] Compiling memchr v2.2.0 [INFO] [stderr] Compiling serde v1.0.90 [INFO] [stderr] Compiling ucd-util v0.1.3 [INFO] [stderr] Compiling cfg-if v0.1.7 [INFO] [stderr] Compiling regex v1.1.5 [INFO] [stderr] Compiling quick-error v1.2.2 [INFO] [stderr] Compiling utf8-ranges v1.0.2 [INFO] [stderr] Compiling glob v0.2.11 [INFO] [stderr] Compiling pkg-config v0.3.14 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling unicode-width v0.1.5 [INFO] [stderr] Compiling bindgen v0.36.1 [INFO] [stderr] Compiling termcolor v1.0.4 [INFO] [stderr] Compiling bitflags v1.0.4 [INFO] [stderr] Compiling strsim v0.7.0 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling yaml-rust v0.3.5 [INFO] [stderr] Compiling arrayvec v0.4.10 [INFO] [stderr] Compiling byteorder v1.3.1 [INFO] [stderr] Compiling nodrop v0.1.13 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling num-complex v0.2.1 [INFO] [stderr] Compiling matches v0.1.8 [INFO] [stderr] Compiling matrixmultiply v0.1.15 [INFO] [stderr] Compiling smallvec v0.6.9 [INFO] [stderr] Compiling rawpointer v0.1.0 [INFO] [stderr] Compiling scopeguard v0.3.3 [INFO] [stderr] Compiling ndarray v0.12.1 [INFO] [stderr] Compiling memoffset v0.2.1 [INFO] [stderr] Compiling itoa v0.4.3 [INFO] [stderr] Compiling bio v0.25.0 [INFO] [stderr] Compiling percent-encoding v1.0.1 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling bit-vec v0.5.1 [INFO] [stderr] Compiling ieee754 v0.2.6 [INFO] [stderr] Compiling bytecount v0.3.2 [INFO] [stderr] Compiling fnv v1.0.6 [INFO] [stderr] Compiling linear-map v1.2.0 [INFO] [stderr] Compiling thread_local v0.3.6 [INFO] [stderr] Compiling libloading v0.5.0 [INFO] [stderr] Compiling proc-macro2 v0.3.5 [INFO] [stderr] Compiling bzip2-sys v0.1.7 [INFO] [stderr] Compiling itertools v0.7.11 [INFO] [stderr] Compiling itertools v0.6.5 [INFO] [stderr] Compiling itertools v0.8.0 [INFO] [stderr] Compiling log v0.4.6 [INFO] [stderr] Compiling crossbeam-utils v0.2.2 [INFO] [stderr] Compiling humantime v1.2.0 [INFO] [stderr] Compiling fs-utils v1.1.0 [INFO] [stderr] Compiling textwrap v0.10.0 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling regex-syntax v0.6.6 [INFO] [stderr] Compiling regex-syntax v0.5.6 [INFO] [stderr] Compiling unicode-bidi v0.3.4 [INFO] [stderr] Compiling bv v0.10.0 [INFO] [stderr] Compiling unicode-normalization v0.1.8 [INFO] [stderr] Compiling bit-set v0.5.1 [INFO] [stderr] Compiling clang-sys v0.22.0 [INFO] [stderr] Compiling libz-sys v1.0.25 [INFO] [stderr] Compiling lzma-sys v0.1.14 [INFO] [stderr] Compiling quote v0.5.2 [INFO] [stderr] Compiling quote v0.6.12 [INFO] [stderr] Compiling num-integer v0.1.39 [INFO] [stderr] Compiling approx v0.3.2 [INFO] [stderr] Compiling ordered-float v1.0.2 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling memchr v1.0.2 [INFO] [stderr] Compiling atty v0.2.11 [INFO] [stderr] Compiling which v1.0.5 [INFO] [stderr] Compiling rand v0.4.6 [INFO] [stderr] Compiling num_cpus v1.10.0 [INFO] [stderr] Compiling nom v3.2.1 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling crossbeam-epoch v0.3.1 [INFO] [stderr] Compiling aho-corasick v0.7.3 [INFO] [stderr] Compiling aho-corasick v0.6.10 [INFO] [stderr] Compiling csv-core v0.1.5 [INFO] [stderr] Compiling idna v0.1.5 [INFO] [stderr] Compiling crossbeam-deque v0.2.0 [INFO] [stderr] Compiling rayon-core v1.4.1 [INFO] [stderr] Compiling rand v0.3.23 [INFO] [stderr] Compiling url v1.7.2 [INFO] [stderr] Compiling statrs v0.9.0 [INFO] [stderr] Compiling cexpr v0.2.3 [INFO] [stderr] Compiling rayon v1.0.3 [INFO] [stderr] Compiling regex v0.2.11 [INFO] [stderr] Compiling serde_derive v1.0.90 [INFO] [stderr] Compiling env_logger v0.5.13 [INFO] [stderr] Compiling vec_map v0.8.1 [INFO] [stderr] Compiling bio-types v0.4.0 [INFO] [stderr] Compiling csv v1.0.7 [INFO] [stderr] Compiling multimap v0.4.0 [INFO] [stderr] Compiling clap v2.32.0 [INFO] [stderr] Compiling rust-htslib v0.22.0 [INFO] [stderr] Compiling ngslib v0.1.0 (https://github.com/mal2017/ngslib.git?tag=0.1.0-alpha.2#b34385bf) [INFO] [stderr] Compiling cutsites v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `bio::io::bed::*` [INFO] [stdout] --> src/main.rs:10:5 [INFO] [stdout] | [INFO] [stdout] 10 | use bio::io::bed::*; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `bio::io::bed::Record` [INFO] [stdout] --> src/main.rs:11:5 [INFO] [stdout] | [INFO] [stdout] 11 | use bio::io::bed::Record; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `itertools::Itertools` [INFO] [stdout] --> src/main.rs:19:5 [INFO] [stdout] | [INFO] [stdout] 19 | use itertools::Itertools; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `ArgGroup` [INFO] [stdout] --> src/main.rs:25:26 [INFO] [stdout] | [INFO] [stdout] 25 | use clap::{App, Arg, ArgGroup}; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:101:9 [INFO] [stdout] | [INFO] [stdout] 101 | let mut bam = bam::IndexedReader::from_path(bp).unwrap(); [INFO] [stdout] | ----^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 5 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 2m 55s [INFO] running `Command { std: "docker" "inspect" "05cfdded76827658519f2a0120ed5612accd34f69849118ea93adcb9710dfd8f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "05cfdded76827658519f2a0120ed5612accd34f69849118ea93adcb9710dfd8f", kill_on_drop: false }` [INFO] [stdout] 05cfdded76827658519f2a0120ed5612accd34f69849118ea93adcb9710dfd8f [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] e0f67fa4423582ddaf40b24f5e976049c6afd1d96b34fe28dd5087de4ec2251c [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "e0f67fa4423582ddaf40b24f5e976049c6afd1d96b34fe28dd5087de4ec2251c", kill_on_drop: false }` [INFO] [stderr] Compiling cutsites v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `bio::io::bed::*` [INFO] [stdout] --> src/main.rs:10:5 [INFO] [stdout] | [INFO] [stdout] 10 | use bio::io::bed::*; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `bio::io::bed::Record` [INFO] [stdout] --> src/main.rs:11:5 [INFO] [stdout] | [INFO] [stdout] 11 | use bio::io::bed::Record; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `itertools::Itertools` [INFO] [stdout] --> src/main.rs:19:5 [INFO] [stdout] | [INFO] [stdout] 19 | use itertools::Itertools; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `ArgGroup` [INFO] [stdout] --> src/main.rs:25:26 [INFO] [stdout] | [INFO] [stdout] 25 | use clap::{App, Arg, ArgGroup}; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:101:9 [INFO] [stdout] | [INFO] [stdout] 101 | let mut bam = bam::IndexedReader::from_path(bp).unwrap(); [INFO] [stdout] | ----^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 5 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 1.30s [INFO] running `Command { std: "docker" "inspect" "e0f67fa4423582ddaf40b24f5e976049c6afd1d96b34fe28dd5087de4ec2251c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e0f67fa4423582ddaf40b24f5e976049c6afd1d96b34fe28dd5087de4ec2251c", kill_on_drop: false }` [INFO] [stdout] e0f67fa4423582ddaf40b24f5e976049c6afd1d96b34fe28dd5087de4ec2251c [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 02a5b09e4fb0be7ecfdb6d77e4c93772424118f6d85457389294bf7fde203b1a [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "02a5b09e4fb0be7ecfdb6d77e4c93772424118f6d85457389294bf7fde203b1a", kill_on_drop: false }` [INFO] [stderr] warning: unused import: `bio::io::bed::*` [INFO] [stderr] --> src/main.rs:10:5 [INFO] [stderr] | [INFO] [stderr] 10 | use bio::io::bed::*; [INFO] [stderr] | ^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused import: `bio::io::bed::Record` [INFO] [stderr] --> src/main.rs:11:5 [INFO] [stderr] | [INFO] [stderr] 11 | use bio::io::bed::Record; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `itertools::Itertools` [INFO] [stderr] --> src/main.rs:19:5 [INFO] [stderr] | [INFO] [stderr] 19 | use itertools::Itertools; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `ArgGroup` [INFO] [stderr] --> src/main.rs:25:26 [INFO] [stderr] | [INFO] [stderr] 25 | use clap::{App, Arg, ArgGroup}; [INFO] [stderr] | ^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:101:9 [INFO] [stderr] | [INFO] [stderr] 101 | let mut bam = bam::IndexedReader::from_path(bp).unwrap(); [INFO] [stderr] | ----^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_mut)]` on by default [INFO] [stderr] [INFO] [stderr] warning: `cutsites` (bin "cutsites" test) generated 5 warnings [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.15s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/cutsites-3c7be688e8b4c80b) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "02a5b09e4fb0be7ecfdb6d77e4c93772424118f6d85457389294bf7fde203b1a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "02a5b09e4fb0be7ecfdb6d77e4c93772424118f6d85457389294bf7fde203b1a", kill_on_drop: false }` [INFO] [stdout] 02a5b09e4fb0be7ecfdb6d77e4c93772424118f6d85457389294bf7fde203b1a