[INFO] cloning repository https://github.com/laeblab/crispy [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/laeblab/crispy" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Flaeblab%2Fcrispy", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Flaeblab%2Fcrispy'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 5d1c69457c80ee0867dc55ddf1ad74a3b6909ccf [INFO] testing laeblab/crispy against try#722e1797249a965b6335aebd65d777f917e498f1 for pr-91031 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Flaeblab%2Fcrispy" "/workspace/builds/worker-1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-1/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/laeblab/crispy on toolchain 722e1797249a965b6335aebd65d777f917e498f1 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/laeblab/crispy [INFO] finished tweaking git repo https://github.com/laeblab/crispy [INFO] tweaked toml for git repo https://github.com/laeblab/crispy written to /workspace/builds/worker-1/source/Cargo.toml [INFO] crate git repo https://github.com/laeblab/crispy already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded indicatif v0.12.0 [INFO] [stderr] Downloaded bio-types v0.5.1 [INFO] [stderr] Downloaded bitflags v1.2.0 [INFO] [stderr] Downloaded proc-macro2 v1.0.5 [INFO] [stderr] Downloaded console v0.9.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 55826095fd92b73903a38e855b5152f8eb74206d074fd48d48e669a525d74325 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "55826095fd92b73903a38e855b5152f8eb74206d074fd48d48e669a525d74325", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "55826095fd92b73903a38e855b5152f8eb74206d074fd48d48e669a525d74325", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "55826095fd92b73903a38e855b5152f8eb74206d074fd48d48e669a525d74325", kill_on_drop: false }` [INFO] [stdout] 55826095fd92b73903a38e855b5152f8eb74206d074fd48d48e669a525d74325 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 72f5307d6d873f14e84895bccd739601ca97891d38c46fb9e123042e5f892b24 [INFO] running `Command { std: "docker" "start" "-a" "72f5307d6d873f14e84895bccd739601ca97891d38c46fb9e123042e5f892b24", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.5 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling regex-syntax v0.6.12 [INFO] [stderr] Compiling nodrop v0.1.14 [INFO] [stderr] Compiling scopeguard v1.0.0 [INFO] [stderr] Compiling ndarray v0.13.1 [INFO] [stderr] Compiling rayon-core v1.6.0 [INFO] [stderr] Compiling version_check v0.1.5 [INFO] [stderr] Compiling itoa v0.4.4 [INFO] [stderr] Compiling bio v0.31.0 [INFO] [stderr] Compiling bit-vec v0.5.1 [INFO] [stderr] Compiling rustc-demangle v0.1.16 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling thread_local v0.3.6 [INFO] [stderr] Compiling num-complex v0.2.3 [INFO] [stderr] Compiling itertools v0.9.0 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling crossbeam-utils v0.6.6 [INFO] [stderr] Compiling memchr v2.2.1 [INFO] [stderr] Compiling getrandom v0.1.14 [INFO] [stderr] Compiling clicolors-control v1.0.1 [INFO] [stderr] Compiling num_cpus v1.10.1 [INFO] [stderr] Compiling termios v0.3.1 [INFO] [stderr] Compiling atty v0.2.13 [INFO] [stderr] Compiling memoffset v0.5.1 [INFO] [stderr] Compiling regex-automata v0.1.8 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling arrayvec v0.4.12 [INFO] [stderr] Compiling backtrace-sys v0.1.31 [INFO] [stderr] Compiling rand_core v0.5.1 [INFO] [stderr] Compiling bit-set v0.5.1 [INFO] [stderr] Compiling aho-corasick v0.7.6 [INFO] [stderr] Compiling csv-core v0.1.6 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling ordered-float v1.0.2 [INFO] [stderr] Compiling approx v0.3.2 [INFO] [stderr] Compiling crossbeam-queue v0.1.2 [INFO] [stderr] Compiling error-chain v0.12.1 [INFO] [stderr] Compiling backtrace v0.3.38 [INFO] [stderr] Compiling rand_chacha v0.2.2 [INFO] [stderr] Compiling crossbeam-epoch v0.7.2 [INFO] [stderr] Compiling rand v0.7.3 [INFO] [stderr] Compiling crossbeam-deque v0.7.1 [INFO] [stderr] Compiling quote v1.0.2 [INFO] [stderr] Compiling syn v1.0.5 [INFO] [stderr] Compiling rayon v1.2.0 [INFO] [stderr] Compiling statrs v0.12.0 [INFO] [stderr] Compiling regex v1.3.1 [INFO] [stderr] Compiling console v0.9.0 [INFO] [stderr] Compiling indicatif v0.12.0 [INFO] [stderr] Compiling serde_derive v1.0.101 [INFO] [stderr] Compiling snafu-derive v0.6.8 [INFO] [stderr] Compiling strum_macros v0.18.0 [INFO] [stderr] Compiling getset v0.0.9 [INFO] [stderr] Compiling snafu v0.6.8 [INFO] [stderr] Compiling serde v1.0.101 [INFO] [stderr] Compiling vec_map v0.8.1 [INFO] [stderr] Compiling bstr v0.2.8 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling bio-types v0.5.1 [INFO] [stderr] Compiling multimap v0.6.0 [INFO] [stderr] Compiling clap v2.33.0 [INFO] [stderr] Compiling csv v1.1.1 [INFO] [stderr] Compiling crispyr v0.2.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: field is never read: `depth` [INFO] [stdout] --> src/commands/find.rs:25:5 [INFO] [stdout] | [INFO] [stdout] 25 | depth: usize, [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 1 warning emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `depth` [INFO] [stdout] --> src/commands/find.rs:25:5 [INFO] [stdout] | [INFO] [stdout] 25 | depth: usize, [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 1 warning emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1m 59s [INFO] running `Command { std: "docker" "inspect" "72f5307d6d873f14e84895bccd739601ca97891d38c46fb9e123042e5f892b24", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "72f5307d6d873f14e84895bccd739601ca97891d38c46fb9e123042e5f892b24", kill_on_drop: false }` [INFO] [stdout] 72f5307d6d873f14e84895bccd739601ca97891d38c46fb9e123042e5f892b24 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] c3aca496a6227c67a1c079dc06e1e99f328d06653d9b3e39a15fcdfc37d03a28 [INFO] running `Command { std: "docker" "start" "-a" "c3aca496a6227c67a1c079dc06e1e99f328d06653d9b3e39a15fcdfc37d03a28", kill_on_drop: false }` [INFO] [stdout] warning: field is never read: `depth` [INFO] [stdout] --> src/commands/find.rs:25:5 [INFO] [stdout] | [INFO] [stdout] 25 | depth: usize, [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 1 warning emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `depth` [INFO] [stdout] --> src/commands/find.rs:25:5 [INFO] [stdout] | [INFO] [stdout] 25 | depth: usize, [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 1 warning emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling crispyr v0.2.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: field is never read: `depth` [INFO] [stdout] --> src/commands/find.rs:25:5 [INFO] [stdout] | [INFO] [stdout] 25 | depth: usize, [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `depth` [INFO] [stdout] --> src/commands/find.rs:25:5 [INFO] [stdout] | [INFO] [stdout] 25 | depth: usize, [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 1 warning emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 1 warning emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 11.83s [INFO] running `Command { std: "docker" "inspect" "c3aca496a6227c67a1c079dc06e1e99f328d06653d9b3e39a15fcdfc37d03a28", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c3aca496a6227c67a1c079dc06e1e99f328d06653d9b3e39a15fcdfc37d03a28", kill_on_drop: false }` [INFO] [stdout] c3aca496a6227c67a1c079dc06e1e99f328d06653d9b3e39a15fcdfc37d03a28 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] ee0373b2fd45472a3eb8d058e21196a13e6e13be7e7510150532cfeed8da7c62 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "ee0373b2fd45472a3eb8d058e21196a13e6e13be7e7510150532cfeed8da7c62", kill_on_drop: false }` [INFO] [stderr] warning: field is never read: `depth` [INFO] [stderr] --> src/commands/find.rs:25:5 [INFO] [stderr] | [INFO] [stderr] 25 | depth: usize, [INFO] [stderr] | ^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` on by default [INFO] [stderr] [INFO] [stderr] warning: `crispyr` (lib) generated 1 warning [INFO] [stderr] warning: `crispyr` (lib test) generated 1 warning (1 duplicate) [INFO] [stderr] warning: `crispyr` (bin "crispyr") generated 1 warning (1 duplicate) [INFO] [stderr] warning: `crispyr` (bin "crispyr" test) generated 1 warning (1 duplicate) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.19s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/crispyr-df6673cb787fcf03) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/crispyr-25041f294148a2dd) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running tests/enzyme.rs (/opt/rustwide/target/debug/deps/enzyme-8df31ea25849eb88) [INFO] [stdout] [INFO] [stdout] running 3 tests [INFO] [stderr] Running tests/index.rs (/opt/rustwide/target/debug/deps/index-f4cff272d3c80642) [INFO] [stdout] test test_enzyme_unknown ... ok [INFO] [stdout] test test_enzyme_mad7 ... ok [INFO] [stdout] test test_enzyme_cas9 ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 3 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 12 tests [INFO] [stdout] test test_position_to_u64_forward_pos_and_ref ... ok [INFO] [stdout] test test_position_to_u64_forward_pos_no_ref ... ok [INFO] [stdout] test test_position_to_u64_forward_zeroes ... ok [INFO] [stdout] test test_position_to_u64_reverse_neg_pos_and_ref ... ok [INFO] [stdout] test test_position_to_u64_forward_ref_no_pos ... ok [INFO] [stdout] test test_position_to_u64_forward_neg_pos_and_ref ... ok [INFO] [stdout] test test_position_to_u64_reverse_neg_pos_no_ref ... ok [INFO] [stdout] test test_position_to_u64_forward_neg_pos_no_ref ... ok [INFO] [stdout] test test_position_to_u64_reverse_ref_no_pos ... ok [INFO] [stderr] Running tests/iupac.rs (/opt/rustwide/target/debug/deps/iupac-6ce7a7f6c02a97ea) [INFO] [stdout] test test_position_to_u64_reverse_zeroes ... ok [INFO] [stdout] test test_position_to_u64_reverse_pos_and_ref ... ok [INFO] [stdout] test test_position_to_u64_reverse_pos_no_ref ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 12 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 3 tests [INFO] [stdout] test test_basic_nucleotides ... ok [INFO] [stderr] Running tests/pam.rs (/opt/rustwide/target/debug/deps/pam-cab9d6f39cad7f57) [INFO] [stdout] test test_degenerate_nucleotide ... ok [INFO] [stdout] test test_non_nucleotide_values ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 3 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.03s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 15 tests [INFO] [stdout] test test_empty_tail_pam_matches ... ok [INFO] [stdout] test test_empty_head_pam_matches ... ok [INFO] [stdout] test test_head_pam_matches ... ok [INFO] [stdout] test test_tail_kmer ... ok [INFO] [stdout] test test_pam_lengths ... ok [INFO] [stdout] test test_empty_head_pam_kmer_slice ... ok [INFO] [stdout] test test_tail_pam_matches ... ok [INFO] [stdout] test test_enzyme_kmer_mut_mad7 ... ok [INFO] [stdout] test test_enzyme_kmer_cas9 ... ok [INFO] [stdout] test test_empty_tail_pam_kmer_slice ... ok [INFO] [stdout] test test_pam_position ... ok [INFO] [stdout] test test_to_string ... ok [INFO] [stdout] test test_enzyme_kmer_mad7 ... ok [INFO] [stdout] test test_enzyme_kmer_mut_cas9 ... ok [INFO] [stderr] Doc-tests crispyr [INFO] [stdout] test test_head_kmer ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 15 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "ee0373b2fd45472a3eb8d058e21196a13e6e13be7e7510150532cfeed8da7c62", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ee0373b2fd45472a3eb8d058e21196a13e6e13be7e7510150532cfeed8da7c62", kill_on_drop: false }` [INFO] [stdout] ee0373b2fd45472a3eb8d058e21196a13e6e13be7e7510150532cfeed8da7c62