[INFO] cloning repository https://github.com/chfi/rust-qtlreaper [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/chfi/rust-qtlreaper" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fchfi%2Frust-qtlreaper", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fchfi%2Frust-qtlreaper'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 8d650921ec4aec63c42068de58b91579228f57b1 [INFO] testing chfi/rust-qtlreaper against try#722e1797249a965b6335aebd65d777f917e498f1 for pr-91031 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fchfi%2Frust-qtlreaper" "/workspace/builds/worker-12/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-12/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/chfi/rust-qtlreaper on toolchain 722e1797249a965b6335aebd65d777f917e498f1 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/chfi/rust-qtlreaper [INFO] finished tweaking git repo https://github.com/chfi/rust-qtlreaper [INFO] tweaked toml for git repo https://github.com/chfi/rust-qtlreaper written to /workspace/builds/worker-12/source/Cargo.toml [INFO] crate git repo https://github.com/chfi/rust-qtlreaper already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] caf4541eb084dccd4bc8b14551b33fe0db7cc1034a7b9da0fd37fd43307e8733 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "caf4541eb084dccd4bc8b14551b33fe0db7cc1034a7b9da0fd37fd43307e8733", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "caf4541eb084dccd4bc8b14551b33fe0db7cc1034a7b9da0fd37fd43307e8733", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "caf4541eb084dccd4bc8b14551b33fe0db7cc1034a7b9da0fd37fd43307e8733", kill_on_drop: false }` [INFO] [stdout] caf4541eb084dccd4bc8b14551b33fe0db7cc1034a7b9da0fd37fd43307e8733 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 59afb9539e7f8ca091bd8d7dd2455b6f2bfaf4f877d9630cbae93da62941587a [INFO] running `Command { std: "docker" "start" "-a" "59afb9539e7f8ca091bd8d7dd2455b6f2bfaf4f877d9630cbae93da62941587a", kill_on_drop: false }` [INFO] [stderr] Compiling autocfg v0.1.6 [INFO] [stderr] Compiling libc v0.2.54 [INFO] [stderr] Compiling rand_core v0.4.0 [INFO] [stderr] Compiling unicode-xid v0.1.0 [INFO] [stderr] Compiling syn v0.15.34 [INFO] [stderr] Compiling arrayvec v0.4.10 [INFO] [stderr] Compiling nodrop v0.1.13 [INFO] [stderr] Compiling memoffset v0.2.1 [INFO] [stderr] Compiling rayon-core v1.4.1 [INFO] [stderr] Compiling scopeguard v0.3.3 [INFO] [stderr] Compiling unicode-width v0.1.5 [INFO] [stderr] Compiling serde v1.0.91 [INFO] [stderr] Compiling matrixmultiply v0.1.15 [INFO] [stderr] Compiling either v1.5.2 [INFO] [stderr] Compiling unicode-segmentation v1.3.0 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling rawpointer v0.1.0 [INFO] [stderr] Compiling ndarray v0.12.1 [INFO] [stderr] Compiling bitflags v1.0.4 [INFO] [stderr] Compiling rayon v1.0.3 [INFO] [stderr] Compiling vec_map v0.8.1 [INFO] [stderr] Compiling crossbeam-utils v0.2.2 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling itertools v0.7.11 [INFO] [stderr] Compiling proc-macro2 v0.4.30 [INFO] [stderr] Compiling rand_core v0.3.1 [INFO] [stderr] Compiling rand_jitter v0.1.4 [INFO] [stderr] Compiling heck v0.3.1 [INFO] [stderr] Compiling rand_xorshift v0.1.1 [INFO] [stderr] Compiling rand_hc v0.1.0 [INFO] [stderr] Compiling rand_isaac v0.1.1 [INFO] [stderr] Compiling num-traits v0.2.8 [INFO] [stderr] Compiling rand_pcg v0.1.2 [INFO] [stderr] Compiling rand_chacha v0.1.1 [INFO] [stderr] Compiling num-complex v0.2.3 [INFO] [stderr] Compiling rand v0.6.5 [INFO] [stderr] Compiling quote v0.6.12 [INFO] [stderr] Compiling crossbeam-epoch v0.3.1 [INFO] [stderr] Compiling atty v0.2.11 [INFO] [stderr] Compiling num_cpus v1.10.0 [INFO] [stderr] Compiling rand_os v0.1.3 [INFO] [stderr] Compiling clap v2.33.0 [INFO] [stderr] Compiling crossbeam-deque v0.2.0 [INFO] [stderr] Compiling serde_derive v1.0.91 [INFO] [stderr] Compiling structopt-derive v0.2.15 [INFO] [stderr] Compiling structopt v0.2.15 [INFO] [stderr] Compiling serde_json v1.0.39 [INFO] [stderr] Compiling qtlreaper v0.1.4 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused `#[macro_use]` import [INFO] [stdout] --> src/lib.rs:5:22 [INFO] [stdout] | [INFO] [stdout] 5 | #[macro_use(s, azip, array)] [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant is never used: `PERMUTATION_TESTSIZE` [INFO] [stdout] --> src/regression.rs:5:1 [INFO] [stdout] | [INFO] [stdout] 5 | const PERMUTATION_TESTSIZE: usize = 1000; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `regression_2n_variance` [INFO] [stdout] --> src/regression.rs:250:4 [INFO] [stdout] | [INFO] [stdout] 250 | fn regression_2n_variance( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 3 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `n_bootstrap` [INFO] [stdout] --> src/main.rs:67:5 [INFO] [stdout] | [INFO] [stdout] 67 | n_bootstrap: usize, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 1 warning emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1m 12s [INFO] running `Command { std: "docker" "inspect" "59afb9539e7f8ca091bd8d7dd2455b6f2bfaf4f877d9630cbae93da62941587a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "59afb9539e7f8ca091bd8d7dd2455b6f2bfaf4f877d9630cbae93da62941587a", kill_on_drop: false }` [INFO] [stdout] 59afb9539e7f8ca091bd8d7dd2455b6f2bfaf4f877d9630cbae93da62941587a [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] a42712d15a0729a77e6b8aac7d14d1e2c40cca34e41ffd2f2fcb79e17a3603d3 [INFO] running `Command { std: "docker" "start" "-a" "a42712d15a0729a77e6b8aac7d14d1e2c40cca34e41ffd2f2fcb79e17a3603d3", kill_on_drop: false }` [INFO] [stdout] warning: unused `#[macro_use]` import [INFO] [stdout] --> src/lib.rs:5:22 [INFO] [stdout] | [INFO] [stdout] 5 | #[macro_use(s, azip, array)] [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant is never used: `PERMUTATION_TESTSIZE` [INFO] [stdout] --> src/regression.rs:5:1 [INFO] [stdout] | [INFO] [stdout] 5 | const PERMUTATION_TESTSIZE: usize = 1000; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `regression_2n_variance` [INFO] [stdout] --> src/regression.rs:250:4 [INFO] [stdout] | [INFO] [stdout] 250 | fn regression_2n_variance( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 3 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling qtlreaper v0.1.4 (/opt/rustwide/workdir) [INFO] [stdout] warning: field is never read: `n_bootstrap` [INFO] [stdout] --> src/main.rs:67:5 [INFO] [stdout] | [INFO] [stdout] 67 | n_bootstrap: usize, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant is never used: `PERMUTATION_TESTSIZE` [INFO] [stdout] --> src/regression.rs:5:1 [INFO] [stdout] | [INFO] [stdout] 5 | const PERMUTATION_TESTSIZE: usize = 1000; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `regression_2n_variance` [INFO] [stdout] --> src/regression.rs:250:4 [INFO] [stdout] | [INFO] [stdout] 250 | fn regression_2n_variance( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 1 warning emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 2 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 3.77s [INFO] running `Command { std: "docker" "inspect" "a42712d15a0729a77e6b8aac7d14d1e2c40cca34e41ffd2f2fcb79e17a3603d3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a42712d15a0729a77e6b8aac7d14d1e2c40cca34e41ffd2f2fcb79e17a3603d3", kill_on_drop: false }` [INFO] [stdout] a42712d15a0729a77e6b8aac7d14d1e2c40cca34e41ffd2f2fcb79e17a3603d3 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "test" "--frozen", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] b6a1754b7106fc7a16d80c5f1d7c3317ce1b7955e52d608673f84838d8574112 [INFO] running `Command { std: "docker" "start" "-a" "b6a1754b7106fc7a16d80c5f1d7c3317ce1b7955e52d608673f84838d8574112", kill_on_drop: false }` [INFO] [stderr] warning: unused `#[macro_use]` import [INFO] [stderr] --> src/lib.rs:5:22 [INFO] [stderr] | [INFO] [stderr] 5 | #[macro_use(s, azip, array)] [INFO] [stderr] | ^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` on by default [INFO] [stderr] [INFO] [stderr] warning: constant is never used: `PERMUTATION_TESTSIZE` [INFO] [stderr] --> src/regression.rs:5:1 [INFO] [stderr] | [INFO] [stderr] 5 | const PERMUTATION_TESTSIZE: usize = 1000; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` on by default [INFO] [stderr] [INFO] [stderr] warning: function is never used: `regression_2n_variance` [INFO] [stderr] --> src/regression.rs:250:4 [INFO] [stderr] | [INFO] [stderr] 250 | fn regression_2n_variance( [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: `qtlreaper` (lib) generated 3 warnings [INFO] [stderr] warning: `qtlreaper` (lib test) generated 2 warnings (2 duplicates) [INFO] [stderr] warning: field is never read: `n_bootstrap` [INFO] [stderr] --> src/main.rs:67:5 [INFO] [stderr] | [INFO] [stderr] 67 | n_bootstrap: usize, [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` on by default [INFO] [stderr] [INFO] [stderr] warning: `qtlreaper` (bin "qtlreaper" test) generated 1 warning [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.08s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/qtlreaper-bbe7c3b7da77504d) [INFO] [stdout] [INFO] [stdout] running 3 tests [INFO] [stdout] test geneobject::tests::it_can_parse_header ... ok [INFO] [stdout] test geneobject::tests::it_can_parse_metadata ... ok [INFO] [stderr] error: test failed, to rerun pass '--lib' [INFO] [stdout] test geneobject::tests::it_can_estimate_unknown_genotypes ... FAILED [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- geneobject::tests::it_can_estimate_unknown_genotypes stdout ---- [INFO] [stdout] thread 'geneobject::tests::it_can_estimate_unknown_genotypes' panicked at 'assertion failed: `(left == right)` [INFO] [stdout] left: `[Locus { dominance: None, genotype: [Mat, Mat, Pat] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, genoprob: [-1.0, -1.0, 1.0] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, marker: Marker { name: "Mk1", centi_morgan: 10.0, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [Unk, Pat, Unk] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, genoprob: [-0.18523506128077272, 1.0, 0.9616255554798838] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, marker: Marker { name: "Mk2", centi_morgan: 30.3, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [Unk, Unk, Pat] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, genoprob: [0.18906668494617707, 0.3421367343627406, 1.0] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, marker: Marker { name: "Mk3", centi_morgan: 40.1, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [Unk, Unk, Unk] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, genoprob: [0.5826065314914579, -0.32233300305265566, 0.3223330030526552] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, marker: Marker { name: "Mk4", centi_morgan: 50.2, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [Pat, Mat, Unk] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, genoprob: [1.0, -1.0, -0.34213673436274084] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, marker: Marker { name: "Mk5", centi_morgan: 60.3, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [Pat, Mat, Mat] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, genoprob: [1.0, -1.0, -1.0] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, marker: Marker { name: "Mk6", centi_morgan: 70.1, mega_basepair: None, chromosome: "1" } }]`, [INFO] [stdout] right: `[Locus { dominance: None, genotype: [Mat, Mat, Pat] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, genoprob: [-1.0, -1.0, 1.0] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, marker: Marker { name: "Mk1", centi_morgan: 10.0, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [Unk, Pat, Unk] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, genoprob: [-0.18523506128077272, 1.0, 0.9616255554798838] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, marker: Marker { name: "Mk2", centi_morgan: 30.3, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [Unk, Unk, Pat] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, genoprob: [0.18906668494617707, 0.3421367343627405, 1.0] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, marker: Marker { name: "Mk3", centi_morgan: 40.1, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [Unk, Unk, Unk] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, genoprob: [0.5826065314914579, -0.3223330030526561, 0.3223330030526552] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, marker: Marker { name: "Mk4", centi_morgan: 50.2, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [Pat, Mat, Unk] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, genoprob: [1.0, -1.0, -0.34213673436274084] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, marker: Marker { name: "Mk5", centi_morgan: 60.3, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [Pat, Mat, Mat] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, genoprob: [1.0, -1.0, -1.0] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, marker: Marker { name: "Mk6", centi_morgan: 70.1, mega_basepair: None, chromosome: "1" } }]`', src/geneobject.rs:895:9 [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x55622c1d1fbc - std::backtrace_rs::backtrace::libunwind::trace::h7630ba4cba718aa0 [INFO] [stdout] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/std/src/../../backtrace/src/backtrace/libunwind.rs:93:5 [INFO] [stdout] 1: 0x55622c1d1fbc - std::backtrace_rs::backtrace::trace_unsynchronized::he7498e79c157f5ac [INFO] [stdout] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stdout] 2: 0x55622c1d1fbc - std::sys_common::backtrace::_print_fmt::hdaebadaee17bca49 [INFO] [stdout] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stdout] 3: 0x55622c1d1fbc - ::fmt::h82b0e3aaf8a96140 [INFO] [stdout] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stdout] 4: 0x55622c1f4e9c - core::fmt::write::h72801a82c94e6ff1 [INFO] [stdout] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/core/src/fmt/mod.rs:1149:17 [INFO] [stdout] 5: 0x55622c1cdef5 - std::io::Write::write_fmt::h21d7683cabdb4c35 [INFO] [stdout] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/std/src/io/mod.rs:1697:15 [INFO] [stdout] 6: 0x55622c1d3a10 - std::sys_common::backtrace::_print::h1c9a1d19c48821c1 [INFO] [stdout] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stdout] 7: 0x55622c1d3a10 - std::sys_common::backtrace::print::h7ce8802039fa9d0e [INFO] [stdout] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stdout] 8: 0x55622c1d3a10 - std::panicking::default_hook::{{closure}}::hb2a74a8c1499c326 [INFO] [stdout] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/std/src/panicking.rs:211:50 [INFO] [stdout] 9: 0x55622c1d35f6 - std::panicking::default_hook::hf4f180b00076f2b2 [INFO] [stdout] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/std/src/panicking.rs:225:9 [INFO] [stdout] 10: 0x55622c1d40c4 - std::panicking::rust_panic_with_hook::he85ce8435493b711 [INFO] [stdout] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/std/src/panicking.rs:606:17 [INFO] [stdout] 11: 0x55622c1d3ba0 - std::panicking::begin_panic_handler::{{closure}}::h31e15f69e6235bd2 [INFO] [stdout] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/std/src/panicking.rs:502:13 [INFO] [stdout] 12: 0x55622c1d2474 - std::sys_common::backtrace::__rust_end_short_backtrace::hfce2fadb61aaa3ae [INFO] [stdout] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/std/src/sys_common/backtrace.rs:139:18 [INFO] [stdout] 13: 0x55622c1d3b09 - rust_begin_unwind [INFO] [stdout] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/std/src/panicking.rs:498:5 [INFO] [stdout] 14: 0x55622c136871 - core::panicking::panic_fmt::h7b8580d81fcbbacd [INFO] [stdout] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/core/src/panicking.rs:107:14 [INFO] [stdout] 15: 0x55622c1f37a8 - core::panicking::assert_failed_inner::hc71171cfb6f4bc69 [INFO] [stdout] 16: 0x55622c15b0ea - core::panicking::assert_failed::h9762abf1ea838a2a [INFO] [stdout] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/core/src/panicking.rs:145:5 [INFO] [stdout] 17: 0x55622c150e3c - qtlreaper::geneobject::tests::it_can_estimate_unknown_genotypes::hdd95216c288c04d3 [INFO] [stdout] at /opt/rustwide/workdir/src/geneobject.rs:895:9 [INFO] [stdout] 18: 0x55622c14e81a - qtlreaper::geneobject::tests::it_can_estimate_unknown_genotypes::{{closure}}::hcec20059c784eca6 [INFO] [stdout] at /opt/rustwide/workdir/src/geneobject.rs:808:5 [INFO] [stdout] 19: 0x55622c15d16e - core::ops::function::FnOnce::call_once::h4e11ee6a9f6df284 [INFO] [stdout] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 20: 0x55622c19b223 - core::ops::function::FnOnce::call_once::h449577f1c5b077cb [INFO] [stdout] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 21: 0x55622c19b223 - test::__rust_begin_short_backtrace::h8c2a0a5090591869 [INFO] [stdout] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/test/src/lib.rs:585:5 [INFO] [stdout] 22: 0x55622c199db7 - as core::ops::function::FnOnce>::call_once::hea00a22128a38543 [INFO] [stdout] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/alloc/src/boxed.rs:1694:9 [INFO] [stdout] 23: 0x55622c199db7 - as core::ops::function::FnOnce<()>>::call_once::he10b35c3c50d78a0 [INFO] [stdout] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/core/src/panic/unwind_safe.rs:271:9 [INFO] [stdout] 24: 0x55622c199db7 - std::panicking::try::do_call::hc868e78bbc5af2ab [INFO] [stdout] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/std/src/panicking.rs:406:40 [INFO] [stdout] 25: 0x55622c199db7 - std::panicking::try::he468aede74df1b04 [INFO] [stdout] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/std/src/panicking.rs:370:19 [INFO] [stdout] 26: 0x55622c199db7 - std::panic::catch_unwind::hce3c9152e1cf772d [INFO] [stdout] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/std/src/panic.rs:133:14 [INFO] [stdout] 27: 0x55622c199db7 - test::run_test_in_process::h9c4ab8162080cf8c [INFO] [stdout] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/test/src/lib.rs:608:18 [INFO] [stdout] 28: 0x55622c199db7 - test::run_test::run_test_inner::{{closure}}::he9483433cef16afe [INFO] [stdout] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/test/src/lib.rs:500:39 [INFO] [stdout] 29: 0x55622c1670fe - test::run_test::run_test_inner::{{closure}}::h479f1f872a5501ea [INFO] [stdout] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/test/src/lib.rs:527:37 [INFO] [stdout] 30: 0x55622c1670fe - std::sys_common::backtrace::__rust_begin_short_backtrace::h0f1e9b1f279687bc [INFO] [stdout] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/std/src/sys_common/backtrace.rs:123:18 [INFO] [stdout] 31: 0x55622c16bf28 - std::thread::Builder::spawn_unchecked::{{closure}}::{{closure}}::he5560613c5f5cb83 [INFO] [stdout] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/std/src/thread/mod.rs:484:17 [INFO] [stdout] 32: 0x55622c16bf28 - as core::ops::function::FnOnce<()>>::call_once::h8190a68cb05ab92f [INFO] [stdout] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/core/src/panic/unwind_safe.rs:271:9 [INFO] [stdout] 33: 0x55622c16bf28 - std::panicking::try::do_call::h6ae22f5ac22596e4 [INFO] [stdout] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/std/src/panicking.rs:406:40 [INFO] [stdout] 34: 0x55622c16bf28 - std::panicking::try::h2381c25487d6a7c2 [INFO] [stdout] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/std/src/panicking.rs:370:19 [INFO] [stdout] 35: 0x55622c16bf28 - std::panic::catch_unwind::hfe902f4d5c9d7b6d [INFO] [stdout] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/std/src/panic.rs:133:14 [INFO] [stdout] 36: 0x55622c16bf28 - std::thread::Builder::spawn_unchecked::{{closure}}::h547fad40771a584e [INFO] [stdout] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/std/src/thread/mod.rs:483:30 [INFO] [stdout] 37: 0x55622c16bf28 - core::ops::function::FnOnce::call_once{{vtable.shim}}::he8602a9971738410 [INFO] [stdout] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 38: 0x55622c1d8b53 - as core::ops::function::FnOnce>::call_once::he162a5c338a10a39 [INFO] [stdout] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/alloc/src/boxed.rs:1694:9 [INFO] [stdout] 39: 0x55622c1d8b53 - as core::ops::function::FnOnce>::call_once::hb27497b21740dd97 [INFO] [stdout] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/alloc/src/boxed.rs:1694:9 [INFO] [stdout] 40: 0x55622c1d8b53 - std::sys::unix::thread::Thread::new::thread_start::he467e990e49c5136 [INFO] [stdout] at /rustc/722e1797249a965b6335aebd65d777f917e498f1/library/std/src/sys/unix/thread.rs:106:17 [INFO] [stdout] 41: 0x7f4899341609 - start_thread [INFO] [stdout] 42: 0x7f4899113293 - clone [INFO] [stdout] 43: 0x0 - [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] geneobject::tests::it_can_estimate_unknown_genotypes [INFO] [stdout] [INFO] [stdout] test result: FAILED. 2 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.10s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "b6a1754b7106fc7a16d80c5f1d7c3317ce1b7955e52d608673f84838d8574112", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b6a1754b7106fc7a16d80c5f1d7c3317ce1b7955e52d608673f84838d8574112", kill_on_drop: false }` [INFO] [stdout] b6a1754b7106fc7a16d80c5f1d7c3317ce1b7955e52d608673f84838d8574112