[INFO] cloning repository https://github.com/Cardosaum/cdr3-parser [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/Cardosaum/cdr3-parser" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FCardosaum%2Fcdr3-parser", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FCardosaum%2Fcdr3-parser'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 9ee439791a3223bc62a2f422755912d42b3a5190 [INFO] testing Cardosaum/cdr3-parser against try#722e1797249a965b6335aebd65d777f917e498f1 for pr-91031 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FCardosaum%2Fcdr3-parser" "/workspace/builds/worker-8/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-8/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/Cardosaum/cdr3-parser on toolchain 722e1797249a965b6335aebd65d777f917e498f1 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/Cardosaum/cdr3-parser [INFO] finished tweaking git repo https://github.com/Cardosaum/cdr3-parser [INFO] tweaked toml for git repo https://github.com/Cardosaum/cdr3-parser written to /workspace/builds/worker-8/source/Cargo.toml [INFO] crate git repo https://github.com/Cardosaum/cdr3-parser already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded serde_with_macros v1.4.2 [INFO] [stderr] Downloaded fs_extra v1.2.0 [INFO] [stderr] Downloaded jemallocator v0.3.2 [INFO] [stderr] Downloaded itertools-num v0.1.3 [INFO] [stderr] Downloaded enum-map v0.6.4 [INFO] [stderr] Downloaded feature-probe v0.1.1 [INFO] [stderr] Downloaded bv v0.11.1 [INFO] [stderr] Downloaded velcro_macros v0.5.2 [INFO] [stderr] Downloaded bio-types v0.11.0 [INFO] [stderr] Downloaded bytecount v0.6.2 [INFO] [stderr] Downloaded velcro v0.5.3 [INFO] [stderr] Downloaded serde_with v1.9.3 [INFO] [stderr] Downloaded ndarray v0.14.0 [INFO] [stderr] Downloaded jemalloc-sys v0.3.2 [INFO] [stderr] Downloaded velcro_core v0.5.2 [INFO] [stderr] Downloaded enum-map-derive v0.4.6 [INFO] [stderr] Downloaded getset v0.0.9 [INFO] [stderr] Downloaded newtype_derive v0.1.6 [INFO] [stderr] Downloaded triple_accel v0.3.4 [INFO] [stderr] Downloaded bio v0.34.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] b427a0308b58ff620a243c66644fa873f31dfd863d4187e9434ab7e2a6f79944 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "b427a0308b58ff620a243c66644fa873f31dfd863d4187e9434ab7e2a6f79944", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "b427a0308b58ff620a243c66644fa873f31dfd863d4187e9434ab7e2a6f79944", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b427a0308b58ff620a243c66644fa873f31dfd863d4187e9434ab7e2a6f79944", kill_on_drop: false }` [INFO] [stdout] b427a0308b58ff620a243c66644fa873f31dfd863d4187e9434ab7e2a6f79944 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] ce0297d73111084229d64f33db333bf2e1124e39ae72d24089aac91d72f6edeb [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "ce0297d73111084229d64f33db333bf2e1124e39ae72d24089aac91d72f6edeb", kill_on_drop: false }` [INFO] [stderr] Compiling syn v1.0.73 [INFO] [stderr] Compiling libc v0.2.97 [INFO] [stderr] Compiling typenum v1.13.0 [INFO] [stderr] Compiling rawpointer v0.2.1 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling either v1.6.1 [INFO] [stderr] Compiling ndarray v0.14.0 [INFO] [stderr] Compiling rustversion v1.0.5 [INFO] [stderr] Compiling bio v0.34.0 [INFO] [stderr] Compiling serde_json v1.0.64 [INFO] [stderr] Compiling array-macro v1.0.5 [INFO] [stderr] Compiling triple_accel v0.3.4 [INFO] [stderr] Compiling strum v0.20.0 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling bytecount v0.6.2 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling memoffset v0.6.4 [INFO] [stderr] Compiling num-rational v0.2.4 [INFO] [stderr] Compiling num-bigint v0.4.0 [INFO] [stderr] Compiling indexmap v1.6.2 [INFO] [stderr] Compiling num-iter v0.1.42 [INFO] [stderr] Compiling num-rational v0.4.0 [INFO] [stderr] Compiling rayon v1.5.1 [INFO] [stderr] Compiling jemalloc-sys v0.3.2 [INFO] [stderr] Compiling heck v0.3.3 [INFO] [stderr] Compiling matrixmultiply v0.2.4 [INFO] [stderr] Compiling itertools v0.9.0 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling csv-core v0.1.10 [INFO] [stderr] Compiling approx v0.3.2 [INFO] [stderr] Compiling num-complex v0.3.1 [INFO] [stderr] Compiling ordered-float v1.1.1 [INFO] [stderr] Compiling num-complex v0.4.0 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling regex v1.5.4 [INFO] [stderr] Compiling crossbeam-epoch v0.9.5 [INFO] [stderr] Compiling petgraph v0.5.1 [INFO] [stderr] Compiling alga v0.9.3 [INFO] [stderr] Compiling crossbeam-deque v0.8.0 [INFO] [stderr] Compiling getrandom v0.1.16 [INFO] [stderr] Compiling num_cpus v1.13.0 [INFO] [stderr] Compiling term_size v0.3.2 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling rand_core v0.5.1 [INFO] [stderr] Compiling rayon-core v1.9.1 [INFO] [stderr] Compiling generic-array v0.13.3 [INFO] [stderr] Compiling rand_chacha v0.2.2 [INFO] [stderr] Compiling rand v0.7.3 [INFO] [stderr] Compiling rand_distr v0.2.2 [INFO] [stderr] Compiling num v0.4.0 [INFO] [stderr] Compiling nalgebra v0.19.0 [INFO] [stderr] Compiling darling_core v0.13.0 [INFO] [stderr] Compiling velcro_core v0.5.2 [INFO] [stderr] Compiling serde_derive v1.0.126 [INFO] [stderr] Compiling thiserror-impl v1.0.25 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Compiling strum_macros v0.20.1 [INFO] [stderr] Compiling enum-map-derive v0.4.6 [INFO] [stderr] Compiling velcro_macros v0.5.2 [INFO] [stderr] Compiling getset v0.0.9 [INFO] [stderr] Compiling darling_macro v0.13.0 [INFO] [stderr] Compiling enum-map v0.6.4 [INFO] [stderr] Compiling velcro v0.5.3 [INFO] [stderr] Compiling thiserror v1.0.25 [INFO] [stderr] Compiling darling v0.13.0 [INFO] [stderr] Compiling serde_with_macros v1.4.2 [INFO] [stderr] Compiling bio-types v0.11.0 [INFO] [stderr] Compiling serde v1.0.126 [INFO] [stderr] Compiling statrs v0.13.0 [INFO] [stderr] Compiling bstr v0.2.16 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling multimap v0.8.3 [INFO] [stderr] Compiling serde_with v1.9.3 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling csv v1.1.6 [INFO] [stderr] Compiling jemallocator v0.3.2 [INFO] [stderr] Compiling cdr3-parser v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `num::pow` [INFO] [stdout] --> src/cdr3/protein_analysis.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use num::pow; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `serde_json::json` [INFO] [stdout] --> src/cdr3/protein_analysis.rs:10:5 [INFO] [stdout] | [INFO] [stdout] 10 | use serde_json::json; [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `aa` [INFO] [stdout] --> src/cdr3/cdr3.rs:91:13 [INFO] [stdout] | [INFO] [stdout] 91 | let aa = match monoisotopic_protein_weights [INFO] [stdout] | ^^ help: if this is intentional, prefix it with an underscore: `_aa` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `sequence` [INFO] [stdout] --> src/cdr3/cdr3.rs:123:24 [INFO] [stdout] | [INFO] [stdout] 123 | pub fn aa_groups<'seq>(sequence: String) -> BTreeMap> { [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_sequence` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `v` [INFO] [stdout] --> src/cdr3/protein_analysis.rs:325:22 [INFO] [stdout] | [INFO] [stdout] 325 | for (aa, v) in &self.count_amino_acids() { [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_v` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `v` [INFO] [stdout] --> src/cdr3/protein_analysis.rs:363:30 [INFO] [stdout] | [INFO] [stdout] 363 | .filter(|(k, v)| **k == 'Y' || **k == 'W' || **k == 'F') [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_v` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `k` [INFO] [stdout] --> src/cdr3/protein_analysis.rs:364:24 [INFO] [stdout] | [INFO] [stdout] 364 | .map(|(k, v)| *v) [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_k` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `n` [INFO] [stdout] --> src/cdr3/protein_analysis.rs:523:25 [INFO] [stdout] | [INFO] [stdout] 523 | if let Some(n) = pKnterminal.get_mut(&nterm) {} [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_n` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/cdr3/protein_analysis.rs:275:49 [INFO] [stdout] | [INFO] [stdout] 275 | pub fn new(sequence: &str, quantity: usize, mut pH: Option) -> Self { [INFO] [stdout] | ----^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/cdr3/protein_analysis.rs:505:17 [INFO] [stdout] | [INFO] [stdout] 505 | let mut pos_pKs: HashMap = POSITIVE_PKS.clone(); [INFO] [stdout] | ----^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/cdr3/protein_analysis.rs:506:17 [INFO] [stdout] | [INFO] [stdout] 506 | let mut neg_pKs: HashMap = NEGATIVE_PKS.clone(); [INFO] [stdout] | ----^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `molecular_weight` [INFO] [stdout] --> src/cdr3/cdr3.rs:61:8 [INFO] [stdout] | [INFO] [stdout] 61 | pub fn molecular_weight(sequence: &str) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `aromaticity` [INFO] [stdout] --> src/cdr3/cdr3.rs:105:8 [INFO] [stdout] | [INFO] [stdout] 105 | pub fn aromaticity(sequence: &str) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `create_cdr3_dict` [INFO] [stdout] --> src/cdr3/cdr3.rs:112:8 [INFO] [stdout] | [INFO] [stdout] 112 | pub fn create_cdr3_dict(cdr3_sequence: Vec) -> BTreeMap { [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `aa_groups` [INFO] [stdout] --> src/cdr3/cdr3.rs:123:8 [INFO] [stdout] | [INFO] [stdout] 123 | pub fn aa_groups<'seq>(sequence: String) -> BTreeMap> { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `pK_table` [INFO] [stdout] --> src/cdr3/protein_analysis.rs:503:8 [INFO] [stdout] | [INFO] [stdout] 503 | fn pK_table(&mut self) -> (HashMap, HashMap) { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `select_charged` [INFO] [stdout] --> src/cdr3/protein_analysis.rs:533:8 [INFO] [stdout] | [INFO] [stdout] 533 | fn select_charged(&mut self) -> HashMap { [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `MW` should have a snake case name [INFO] [stdout] --> src/cdr3/cdr3.rs:24:9 [INFO] [stdout] | [INFO] [stdout] 24 | pub MW: f64, [INFO] [stdout] | ^^ help: convert the identifier to snake case: `mw` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_snake_case)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `AV` should have a snake case name [INFO] [stdout] --> src/cdr3/cdr3.rs:25:9 [INFO] [stdout] | [INFO] [stdout] 25 | pub AV: f64, [INFO] [stdout] | ^^ help: convert the identifier to snake case: `av` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `IP` should have a snake case name [INFO] [stdout] --> src/cdr3/cdr3.rs:26:5 [INFO] [stdout] | [INFO] [stdout] 26 | IP: f64, [INFO] [stdout] | ^^ help: convert the identifier to snake case: `ip` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `P` should have a snake case name [INFO] [stdout] --> src/cdr3/cdr3.rs:284:13 [INFO] [stdout] | [INFO] [stdout] 284 | let mut P = ProteinAnalysis::new(sequence, quantity, None); [INFO] [stdout] | ^ help: convert the identifier to snake case: `p` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `H` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:68:13 [INFO] [stdout] | [INFO] [stdout] 68 | let H: HashMap> = [INFO] [stdout] | ^ help: convert the identifier to snake case: `h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `neg_pKs` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:249:5 [INFO] [stdout] | [INFO] [stdout] 249 | neg_pKs: HashMap, [INFO] [stdout] | ^^^^^^^ help: convert the identifier to snake case: `neg_p_ks` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `pos_pKs` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:251:5 [INFO] [stdout] | [INFO] [stdout] 251 | pos_pKs: HashMap, [INFO] [stdout] | ^^^^^^^ help: convert the identifier to snake case: `pos_p_ks` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `charge_at_pH` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:261:9 [INFO] [stdout] | [INFO] [stdout] 261 | pub charge_at_pH: Option, [INFO] [stdout] | ^^^^^^^^^^^^ help: convert the identifier to snake case: `charge_at_p_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pH` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:275:53 [INFO] [stdout] | [INFO] [stdout] 275 | pub fn new(sequence: &str, quantity: usize, mut pH: Option) -> Self { [INFO] [stdout] | ^^ help: convert the identifier to snake case: `p_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `PA` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:276:17 [INFO] [stdout] | [INFO] [stdout] 276 | let mut PA = ProteinAnalysis { [INFO] [stdout] | ^^ help: convert the identifier to snake case: `pa` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `charge_at_pH` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:438:12 [INFO] [stdout] | [INFO] [stdout] 438 | pub fn charge_at_pH(&mut self, mut pH: Option) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^ help: convert the identifier to snake case: `charge_at_p_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pH` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:438:40 [INFO] [stdout] | [INFO] [stdout] 438 | pub fn charge_at_pH(&mut self, mut pH: Option) -> f64 { [INFO] [stdout] | ^^ help: convert the identifier to snake case: `p_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pK` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:445:22 [INFO] [stdout] | [INFO] [stdout] 445 | for (aa, pK) in &self.pos_pKs { [INFO] [stdout] | ^^ help: convert the identifier to snake case: `p_k` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pK` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:456:22 [INFO] [stdout] | [INFO] [stdout] 456 | for (aa, pK) in &self.neg_pKs { [INFO] [stdout] | ^^ help: convert the identifier to snake case: `p_k` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `pK_table` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:503:8 [INFO] [stdout] | [INFO] [stdout] 503 | fn pK_table(&mut self) -> (HashMap, HashMap) { [INFO] [stdout] | ^^^^^^^^ help: convert the identifier to snake case: `p_k_table` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pos_pKs` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:505:21 [INFO] [stdout] | [INFO] [stdout] 505 | let mut pos_pKs: HashMap = POSITIVE_PKS.clone(); [INFO] [stdout] | ^^^^^^^ help: convert the identifier to snake case: `pos_p_ks` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `neg_pKs` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:506:21 [INFO] [stdout] | [INFO] [stdout] 506 | let mut neg_pKs: HashMap = NEGATIVE_PKS.clone(); [INFO] [stdout] | ^^^^^^^ help: convert the identifier to snake case: `neg_p_ks` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pKnterminal` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:520:21 [INFO] [stdout] | [INFO] [stdout] 520 | let mut pKnterminal = PKNTERMINAL.clone(); [INFO] [stdout] | ^^^^^^^^^^^ help: convert the identifier to snake case: `p_knterminal` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pKcterminal` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:521:21 [INFO] [stdout] | [INFO] [stdout] 521 | let mut pKcterminal = PKCTERMINAL.clone(); [INFO] [stdout] | ^^^^^^^^^^^ help: convert the identifier to snake case: `p_kcterminal` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pH` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:558:13 [INFO] [stdout] | [INFO] [stdout] 558 | mut pH: Option, [INFO] [stdout] | ^^ help: convert the identifier to snake case: `p_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 4m 32s [INFO] [stdout] warning: 37 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "ce0297d73111084229d64f33db333bf2e1124e39ae72d24089aac91d72f6edeb", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ce0297d73111084229d64f33db333bf2e1124e39ae72d24089aac91d72f6edeb", kill_on_drop: false }` [INFO] [stdout] ce0297d73111084229d64f33db333bf2e1124e39ae72d24089aac91d72f6edeb [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] d23cc2eec0cc2813915373c117eeaea825bbc1cd470102b8f8cdbbe6b4916674 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "d23cc2eec0cc2813915373c117eeaea825bbc1cd470102b8f8cdbbe6b4916674", kill_on_drop: false }` [INFO] [stderr] Compiling cdr3-parser v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `num::pow` [INFO] [stdout] --> src/cdr3/protein_analysis.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use num::pow; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `serde_json::json` [INFO] [stdout] --> src/cdr3/protein_analysis.rs:10:5 [INFO] [stdout] | [INFO] [stdout] 10 | use serde_json::json; [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `aa` [INFO] [stdout] --> src/cdr3/cdr3.rs:91:13 [INFO] [stdout] | [INFO] [stdout] 91 | let aa = match monoisotopic_protein_weights [INFO] [stdout] | ^^ help: if this is intentional, prefix it with an underscore: `_aa` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `sequence` [INFO] [stdout] --> src/cdr3/cdr3.rs:123:24 [INFO] [stdout] | [INFO] [stdout] 123 | pub fn aa_groups<'seq>(sequence: String) -> BTreeMap> { [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_sequence` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `v` [INFO] [stdout] --> src/cdr3/protein_analysis.rs:325:22 [INFO] [stdout] | [INFO] [stdout] 325 | for (aa, v) in &self.count_amino_acids() { [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_v` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `v` [INFO] [stdout] --> src/cdr3/protein_analysis.rs:363:30 [INFO] [stdout] | [INFO] [stdout] 363 | .filter(|(k, v)| **k == 'Y' || **k == 'W' || **k == 'F') [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_v` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `k` [INFO] [stdout] --> src/cdr3/protein_analysis.rs:364:24 [INFO] [stdout] | [INFO] [stdout] 364 | .map(|(k, v)| *v) [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_k` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `n` [INFO] [stdout] --> src/cdr3/protein_analysis.rs:523:25 [INFO] [stdout] | [INFO] [stdout] 523 | if let Some(n) = pKnterminal.get_mut(&nterm) {} [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_n` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/cdr3/protein_analysis.rs:275:49 [INFO] [stdout] | [INFO] [stdout] 275 | pub fn new(sequence: &str, quantity: usize, mut pH: Option) -> Self { [INFO] [stdout] | ----^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/cdr3/protein_analysis.rs:505:17 [INFO] [stdout] | [INFO] [stdout] 505 | let mut pos_pKs: HashMap = POSITIVE_PKS.clone(); [INFO] [stdout] | ----^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/cdr3/protein_analysis.rs:506:17 [INFO] [stdout] | [INFO] [stdout] 506 | let mut neg_pKs: HashMap = NEGATIVE_PKS.clone(); [INFO] [stdout] | ----^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `molecular_weight` [INFO] [stdout] --> src/cdr3/cdr3.rs:61:8 [INFO] [stdout] | [INFO] [stdout] 61 | pub fn molecular_weight(sequence: &str) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `aromaticity` [INFO] [stdout] --> src/cdr3/cdr3.rs:105:8 [INFO] [stdout] | [INFO] [stdout] 105 | pub fn aromaticity(sequence: &str) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `create_cdr3_dict` [INFO] [stdout] --> src/cdr3/cdr3.rs:112:8 [INFO] [stdout] | [INFO] [stdout] 112 | pub fn create_cdr3_dict(cdr3_sequence: Vec) -> BTreeMap { [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `aa_groups` [INFO] [stdout] --> src/cdr3/cdr3.rs:123:8 [INFO] [stdout] | [INFO] [stdout] 123 | pub fn aa_groups<'seq>(sequence: String) -> BTreeMap> { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `pK_table` [INFO] [stdout] --> src/cdr3/protein_analysis.rs:503:8 [INFO] [stdout] | [INFO] [stdout] 503 | fn pK_table(&mut self) -> (HashMap, HashMap) { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `select_charged` [INFO] [stdout] --> src/cdr3/protein_analysis.rs:533:8 [INFO] [stdout] | [INFO] [stdout] 533 | fn select_charged(&mut self) -> HashMap { [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `MW` should have a snake case name [INFO] [stdout] --> src/cdr3/cdr3.rs:24:9 [INFO] [stdout] | [INFO] [stdout] 24 | pub MW: f64, [INFO] [stdout] | ^^ help: convert the identifier to snake case: `mw` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_snake_case)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `AV` should have a snake case name [INFO] [stdout] --> src/cdr3/cdr3.rs:25:9 [INFO] [stdout] | [INFO] [stdout] 25 | pub AV: f64, [INFO] [stdout] | ^^ help: convert the identifier to snake case: `av` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `IP` should have a snake case name [INFO] [stdout] --> src/cdr3/cdr3.rs:26:5 [INFO] [stdout] | [INFO] [stdout] 26 | IP: f64, [INFO] [stdout] | ^^ help: convert the identifier to snake case: `ip` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `P` should have a snake case name [INFO] [stdout] --> src/cdr3/cdr3.rs:284:13 [INFO] [stdout] | [INFO] [stdout] 284 | let mut P = ProteinAnalysis::new(sequence, quantity, None); [INFO] [stdout] | ^ help: convert the identifier to snake case: `p` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `H` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:68:13 [INFO] [stdout] | [INFO] [stdout] 68 | let H: HashMap> = [INFO] [stdout] | ^ help: convert the identifier to snake case: `h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `neg_pKs` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:249:5 [INFO] [stdout] | [INFO] [stdout] 249 | neg_pKs: HashMap, [INFO] [stdout] | ^^^^^^^ help: convert the identifier to snake case: `neg_p_ks` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `pos_pKs` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:251:5 [INFO] [stdout] | [INFO] [stdout] 251 | pos_pKs: HashMap, [INFO] [stdout] | ^^^^^^^ help: convert the identifier to snake case: `pos_p_ks` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `charge_at_pH` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:261:9 [INFO] [stdout] | [INFO] [stdout] 261 | pub charge_at_pH: Option, [INFO] [stdout] | ^^^^^^^^^^^^ help: convert the identifier to snake case: `charge_at_p_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pH` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:275:53 [INFO] [stdout] | [INFO] [stdout] 275 | pub fn new(sequence: &str, quantity: usize, mut pH: Option) -> Self { [INFO] [stdout] | ^^ help: convert the identifier to snake case: `p_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `PA` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:276:17 [INFO] [stdout] | [INFO] [stdout] 276 | let mut PA = ProteinAnalysis { [INFO] [stdout] | ^^ help: convert the identifier to snake case: `pa` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `charge_at_pH` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:438:12 [INFO] [stdout] | [INFO] [stdout] 438 | pub fn charge_at_pH(&mut self, mut pH: Option) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^ help: convert the identifier to snake case: `charge_at_p_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pH` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:438:40 [INFO] [stdout] | [INFO] [stdout] 438 | pub fn charge_at_pH(&mut self, mut pH: Option) -> f64 { [INFO] [stdout] | ^^ help: convert the identifier to snake case: `p_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pK` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:445:22 [INFO] [stdout] | [INFO] [stdout] 445 | for (aa, pK) in &self.pos_pKs { [INFO] [stdout] | ^^ help: convert the identifier to snake case: `p_k` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pK` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:456:22 [INFO] [stdout] | [INFO] [stdout] 456 | for (aa, pK) in &self.neg_pKs { [INFO] [stdout] | ^^ help: convert the identifier to snake case: `p_k` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `pK_table` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:503:8 [INFO] [stdout] | [INFO] [stdout] 503 | fn pK_table(&mut self) -> (HashMap, HashMap) { [INFO] [stdout] | ^^^^^^^^ help: convert the identifier to snake case: `p_k_table` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pos_pKs` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:505:21 [INFO] [stdout] | [INFO] [stdout] 505 | let mut pos_pKs: HashMap = POSITIVE_PKS.clone(); [INFO] [stdout] | ^^^^^^^ help: convert the identifier to snake case: `pos_p_ks` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `neg_pKs` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:506:21 [INFO] [stdout] | [INFO] [stdout] 506 | let mut neg_pKs: HashMap = NEGATIVE_PKS.clone(); [INFO] [stdout] | ^^^^^^^ help: convert the identifier to snake case: `neg_p_ks` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pKnterminal` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:520:21 [INFO] [stdout] | [INFO] [stdout] 520 | let mut pKnterminal = PKNTERMINAL.clone(); [INFO] [stdout] | ^^^^^^^^^^^ help: convert the identifier to snake case: `p_knterminal` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pKcterminal` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:521:21 [INFO] [stdout] | [INFO] [stdout] 521 | let mut pKcterminal = PKCTERMINAL.clone(); [INFO] [stdout] | ^^^^^^^^^^^ help: convert the identifier to snake case: `p_kcterminal` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pH` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:558:13 [INFO] [stdout] | [INFO] [stdout] 558 | mut pH: Option, [INFO] [stdout] | ^^ help: convert the identifier to snake case: `p_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 2.73s [INFO] [stdout] warning: 37 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "d23cc2eec0cc2813915373c117eeaea825bbc1cd470102b8f8cdbbe6b4916674", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d23cc2eec0cc2813915373c117eeaea825bbc1cd470102b8f8cdbbe6b4916674", kill_on_drop: false }` [INFO] [stdout] d23cc2eec0cc2813915373c117eeaea825bbc1cd470102b8f8cdbbe6b4916674 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+722e1797249a965b6335aebd65d777f917e498f1" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] db98a144944dc2765be0e3c9065d6d90e6df36a37f507b036de46b06793daa64 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "db98a144944dc2765be0e3c9065d6d90e6df36a37f507b036de46b06793daa64", kill_on_drop: false }` [INFO] [stderr] warning: unused import: `num::pow` [INFO] [stderr] --> src/cdr3/protein_analysis.rs:8:5 [INFO] [stderr] | [INFO] [stderr] 8 | use num::pow; [INFO] [stderr] | ^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused import: `serde_json::json` [INFO] [stderr] --> src/cdr3/protein_analysis.rs:10:5 [INFO] [stderr] | [INFO] [stderr] 10 | use serde_json::json; [INFO] [stderr] | ^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused variable: `aa` [INFO] [stderr] --> src/cdr3/cdr3.rs:91:13 [INFO] [stderr] | [INFO] [stderr] 91 | let aa = match monoisotopic_protein_weights [INFO] [stderr] | ^^ help: if this is intentional, prefix it with an underscore: `_aa` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_variables)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused variable: `sequence` [INFO] [stderr] --> src/cdr3/cdr3.rs:123:24 [INFO] [stderr] | [INFO] [stderr] 123 | pub fn aa_groups<'seq>(sequence: String) -> BTreeMap> { [INFO] [stderr] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_sequence` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `v` [INFO] [stderr] --> src/cdr3/protein_analysis.rs:325:22 [INFO] [stderr] | [INFO] [stderr] 325 | for (aa, v) in &self.count_amino_acids() { [INFO] [stderr] | ^ help: if this is intentional, prefix it with an underscore: `_v` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `v` [INFO] [stderr] --> src/cdr3/protein_analysis.rs:363:30 [INFO] [stderr] | [INFO] [stderr] 363 | .filter(|(k, v)| **k == 'Y' || **k == 'W' || **k == 'F') [INFO] [stderr] | ^ help: if this is intentional, prefix it with an underscore: `_v` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `k` [INFO] [stderr] --> src/cdr3/protein_analysis.rs:364:24 [INFO] [stderr] | [INFO] [stderr] 364 | .map(|(k, v)| *v) [INFO] [stderr] | ^ help: if this is intentional, prefix it with an underscore: `_k` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `n` [INFO] [stderr] --> src/cdr3/protein_analysis.rs:523:25 [INFO] [stderr] | [INFO] [stderr] 523 | if let Some(n) = pKnterminal.get_mut(&nterm) {} [INFO] [stderr] | ^ help: if this is intentional, prefix it with an underscore: `_n` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/cdr3/protein_analysis.rs:275:49 [INFO] [stderr] | [INFO] [stderr] 275 | pub fn new(sequence: &str, quantity: usize, mut pH: Option) -> Self { [INFO] [stderr] | ----^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_mut)]` on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/cdr3/protein_analysis.rs:505:17 [INFO] [stderr] | [INFO] [stderr] 505 | let mut pos_pKs: HashMap = POSITIVE_PKS.clone(); [INFO] [stderr] | ----^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/cdr3/protein_analysis.rs:506:17 [INFO] [stderr] | [INFO] [stderr] 506 | let mut neg_pKs: HashMap = NEGATIVE_PKS.clone(); [INFO] [stderr] | ----^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: function is never used: `molecular_weight` [INFO] [stderr] --> src/cdr3/cdr3.rs:61:8 [INFO] [stderr] | [INFO] [stderr] 61 | pub fn molecular_weight(sequence: &str) -> f64 { [INFO] [stderr] | ^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` on by default [INFO] [stderr] [INFO] [stderr] warning: function is never used: `aromaticity` [INFO] [stderr] --> src/cdr3/cdr3.rs:105:8 [INFO] [stderr] | [INFO] [stderr] 105 | pub fn aromaticity(sequence: &str) -> f64 { [INFO] [stderr] | ^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: function is never used: `create_cdr3_dict` [INFO] [stderr] --> src/cdr3/cdr3.rs:112:8 [INFO] [stderr] | [INFO] [stderr] 112 | pub fn create_cdr3_dict(cdr3_sequence: Vec) -> BTreeMap { [INFO] [stderr] | ^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: function is never used: `aa_groups` [INFO] [stderr] --> src/cdr3/cdr3.rs:123:8 [INFO] [stderr] | [INFO] [stderr] 123 | pub fn aa_groups<'seq>(sequence: String) -> BTreeMap> { [INFO] [stderr] | ^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: associated function is never used: `pK_table` [INFO] [stderr] --> src/cdr3/protein_analysis.rs:503:8 [INFO] [stderr] | [INFO] [stderr] 503 | fn pK_table(&mut self) -> (HashMap, HashMap) { [INFO] [stderr] | ^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: associated function is never used: `select_charged` [INFO] [stderr] --> src/cdr3/protein_analysis.rs:533:8 [INFO] [stderr] | [INFO] [stderr] 533 | fn select_charged(&mut self) -> HashMap { [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: structure field `MW` should have a snake case name [INFO] [stderr] --> src/cdr3/cdr3.rs:24:9 [INFO] [stderr] | [INFO] [stderr] 24 | pub MW: f64, [INFO] [stderr] | ^^ help: convert the identifier to snake case: `mw` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(non_snake_case)]` on by default [INFO] [stderr] [INFO] [stderr] warning: structure field `AV` should have a snake case name [INFO] [stderr] --> src/cdr3/cdr3.rs:25:9 [INFO] [stderr] | [INFO] [stderr] 25 | pub AV: f64, [INFO] [stderr] | ^^ help: convert the identifier to snake case: `av` [INFO] [stderr] [INFO] [stderr] warning: structure field `IP` should have a snake case name [INFO] [stderr] --> src/cdr3/cdr3.rs:26:5 [INFO] [stderr] | [INFO] [stderr] 26 | IP: f64, [INFO] [stderr] | ^^ help: convert the identifier to snake case: `ip` [INFO] [stderr] [INFO] [stderr] warning: variable `P` should have a snake case name [INFO] [stderr] --> src/cdr3/cdr3.rs:284:13 [INFO] [stderr] | [INFO] [stderr] 284 | let mut P = ProteinAnalysis::new(sequence, quantity, None); [INFO] [stderr] | ^ help: convert the identifier to snake case: `p` [INFO] [stderr] [INFO] [stderr] warning: variable `H` should have a snake case name [INFO] [stderr] --> src/cdr3/protein_analysis.rs:68:13 [INFO] [stderr] | [INFO] [stderr] 68 | let H: HashMap> = [INFO] [stderr] | ^ help: convert the identifier to snake case: `h` [INFO] [stderr] [INFO] [stderr] warning: structure field `neg_pKs` should have a snake case name [INFO] [stderr] --> src/cdr3/protein_analysis.rs:249:5 [INFO] [stderr] | [INFO] [stderr] 249 | neg_pKs: HashMap, [INFO] [stderr] | ^^^^^^^ help: convert the identifier to snake case: `neg_p_ks` [INFO] [stderr] [INFO] [stderr] warning: structure field `pos_pKs` should have a snake case name [INFO] [stderr] --> src/cdr3/protein_analysis.rs:251:5 [INFO] [stderr] | [INFO] [stderr] 251 | pos_pKs: HashMap, [INFO] [stderr] | ^^^^^^^ help: convert the identifier to snake case: `pos_p_ks` [INFO] [stderr] [INFO] [stderr] warning: structure field `charge_at_pH` should have a snake case name [INFO] [stderr] --> src/cdr3/protein_analysis.rs:261:9 [INFO] [stderr] | [INFO] [stderr] 261 | pub charge_at_pH: Option, [INFO] [stderr] | ^^^^^^^^^^^^ help: convert the identifier to snake case: `charge_at_p_h` [INFO] [stderr] [INFO] [stderr] warning: variable `pH` should have a snake case name [INFO] [stderr] --> src/cdr3/protein_analysis.rs:275:53 [INFO] [stderr] | [INFO] [stderr] 275 | pub fn new(sequence: &str, quantity: usize, mut pH: Option) -> Self { [INFO] [stderr] | ^^ help: convert the identifier to snake case: `p_h` [INFO] [stderr] [INFO] [stderr] warning: variable `PA` should have a snake case name [INFO] [stderr] --> src/cdr3/protein_analysis.rs:276:17 [INFO] [stderr] | [INFO] [stderr] 276 | let mut PA = ProteinAnalysis { [INFO] [stderr] | ^^ help: convert the identifier to snake case: `pa` [INFO] [stderr] [INFO] [stderr] warning: method `charge_at_pH` should have a snake case name [INFO] [stderr] --> src/cdr3/protein_analysis.rs:438:12 [INFO] [stderr] | [INFO] [stderr] 438 | pub fn charge_at_pH(&mut self, mut pH: Option) -> f64 { [INFO] [stderr] | ^^^^^^^^^^^^ help: convert the identifier to snake case: `charge_at_p_h` [INFO] [stderr] [INFO] [stderr] warning: variable `pH` should have a snake case name [INFO] [stderr] --> src/cdr3/protein_analysis.rs:438:40 [INFO] [stderr] | [INFO] [stderr] 438 | pub fn charge_at_pH(&mut self, mut pH: Option) -> f64 { [INFO] [stderr] | ^^ help: convert the identifier to snake case: `p_h` [INFO] [stderr] [INFO] [stderr] warning: variable `pK` should have a snake case name [INFO] [stderr] --> src/cdr3/protein_analysis.rs:445:22 [INFO] [stderr] | [INFO] [stderr] 445 | for (aa, pK) in &self.pos_pKs { [INFO] [stderr] | ^^ help: convert the identifier to snake case: `p_k` [INFO] [stderr] [INFO] [stderr] warning: variable `pK` should have a snake case name [INFO] [stderr] --> src/cdr3/protein_analysis.rs:456:22 [INFO] [stderr] | [INFO] [stderr] 456 | for (aa, pK) in &self.neg_pKs { [INFO] [stderr] | ^^ help: convert the identifier to snake case: `p_k` [INFO] [stderr] [INFO] [stderr] warning: method `pK_table` should have a snake case name [INFO] [stderr] --> src/cdr3/protein_analysis.rs:503:8 [INFO] [stderr] | [INFO] [stderr] 503 | fn pK_table(&mut self) -> (HashMap, HashMap) { [INFO] [stderr] | ^^^^^^^^ help: convert the identifier to snake case: `p_k_table` [INFO] [stderr] [INFO] [stderr] warning: variable `pos_pKs` should have a snake case name [INFO] [stderr] --> src/cdr3/protein_analysis.rs:505:21 [INFO] [stderr] | [INFO] [stderr] 505 | let mut pos_pKs: HashMap = POSITIVE_PKS.clone(); [INFO] [stderr] | ^^^^^^^ help: convert the identifier to snake case: `pos_p_ks` [INFO] [stderr] [INFO] [stderr] warning: variable `neg_pKs` should have a snake case name [INFO] [stderr] --> src/cdr3/protein_analysis.rs:506:21 [INFO] [stderr] | [INFO] [stderr] 506 | let mut neg_pKs: HashMap = NEGATIVE_PKS.clone(); [INFO] [stderr] | ^^^^^^^ help: convert the identifier to snake case: `neg_p_ks` [INFO] [stderr] [INFO] [stderr] warning: variable `pKnterminal` should have a snake case name [INFO] [stderr] --> src/cdr3/protein_analysis.rs:520:21 [INFO] [stderr] | [INFO] [stderr] 520 | let mut pKnterminal = PKNTERMINAL.clone(); [INFO] [stderr] | ^^^^^^^^^^^ help: convert the identifier to snake case: `p_knterminal` [INFO] [stderr] [INFO] [stderr] warning: variable `pKcterminal` should have a snake case name [INFO] [stderr] --> src/cdr3/protein_analysis.rs:521:21 [INFO] [stderr] | [INFO] [stderr] 521 | let mut pKcterminal = PKCTERMINAL.clone(); [INFO] [stderr] | ^^^^^^^^^^^ help: convert the identifier to snake case: `p_kcterminal` [INFO] [stderr] [INFO] [stderr] warning: variable `pH` should have a snake case name [INFO] [stderr] --> src/cdr3/protein_analysis.rs:558:13 [INFO] [stderr] | [INFO] [stderr] 558 | mut pH: Option, [INFO] [stderr] | ^^ help: convert the identifier to snake case: `p_h` [INFO] [stderr] [INFO] [stderr] warning: `cdr3-parser` (bin "cdr3-parser" test) generated 37 warnings [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.13s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/cdr3_parser-689e88357ca9e0a5) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "db98a144944dc2765be0e3c9065d6d90e6df36a37f507b036de46b06793daa64", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "db98a144944dc2765be0e3c9065d6d90e6df36a37f507b036de46b06793daa64", kill_on_drop: false }` [INFO] [stdout] db98a144944dc2765be0e3c9065d6d90e6df36a37f507b036de46b06793daa64